1UHAA

Crystal structure of pokeweed lectin-d2
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
82
structure length
82
Chain Sequence
APECGERASGKRCPNGKCCSQWGYCGTTDNYCGQGCQSQCDYWRCGRDFGGRLCEEDMCCSKYGWCGYSDDHCEDGCQSQCD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Sugar binding protein
molecule keywords lectin-D2
publication title Structures of two lectins from the roots of pokeweed (Phytolacca americana).
pubmed doi rcsb
total genus 26
structure length 82
sequence length 82
ec nomenclature
pdb deposition date 2003-06-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00187 Chitin_bind_1 Chitin recognition protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 1uhaA02
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 1uhaA01
2X52A 1WGCA 1ULMA 1ULKA 1K7UA 1ULNA 4AMLA 1UHAA 2CWGA 1Q9BA 1WKXA 7WGAA 1K7VA 1K7TA 1HEVA 4MPIA 2WGCA 1P9ZA 2X3TA 1WGTA 2UVOA 1P9GA 2LB7A 9WGAA 4WP4A 2DKVA
chains in the Genus database with same CATH superfamily
1ULMA 2V1CC 1ULKA 2PQ8A 1BMOA 1K7UA 1MJ9A 5CCMA 2JW6A 2CWGA 3UGDA 2N1AB 1RFHA 1WKXA 2NU1I 2GVIA 3UEJA 1OMUA 1R0RI 3D00A 5E3QA 2JA1A 1SGEI 2QQCA 3OXLA 5EX0A 1K7VA 1CSOI 2KCXA 2N71A 5DAEA 5J8FA 1TBNA 2ORVA 2SGPI 2YUUA 1SGPI 1KMAA 1P9ZA 2OD1A 5HI7A 3QWPA 2OZUA 1OMTA 5JHWC 1SGRI 1TIHA 3QTLD 5FUYA 1H0ZA 3TO7A 1DS3I 2W0TA 2CWHA 2SGQI 2ODDA 1M8BA 1P9GA 2QQEA 1UVFA 2JZMA 2WCYA 3VDUA 1CGJI 2QPOA 3R5CA 2DB6A 2A20A 2X52A 2JYYA 2ENZA 3MEKA 2LUYA 3UGLA 1IW4A 2ELIA 1FARA 5FUXA 3R5AA 2KMPA 3UOEA 2P6AC 2K9HA 3TOBA 2F3CI 1YU6C 3SGQI 1TUSA 3TO9A 1M8CA 5E3PA 1W3SA 1R79A 1SGYI 1Z2IA 5EX3A 3TO6A 3GOXA 1XBTA 1LR8A 2LEOA 3OL0A 1MJBA 3OXGA 2ROWA 2UZ3A 1K7TA 5E3RA 2GKVA 4MPIA 1IY6A 2FNFX 1V1HA 1PTRA 2X3TA 4FKDA 3VE5A 1IY5A 1PJUA 1MJAA 3UFFA 5FUWA 4E1PA 2J9RA 2VRWB 1OVOA 3E59A 1DS2I 3PDNA 1UUCA 4HGUA 1N13A 2CWFA 1TBOA 1TOTA 1TBRR 2M5XA 9WGAA 3TJQA 3FSXA 4SGBI 2V53A 2WVJA 2KMQA 2GIVA 1WGCA 3UGIA 1X74A 2L8EA 3KY9A 1U5KA 2KMOA 2OVOA 2RIJA 1XA6A 2ENNA 1ULNA 1Y1BA 1UHAA 3SGBI 1CT0I 2OU2A 2BUSA 2ORWA 3HH2C 1YTPA 4OVOA 4B6DA 1CT4I 1XX6A 2XRCA 1CE3A 1FAQA 5J8CA 1CHOI 1OYVI 1TURA 3FC3A 3BJIA 2NU4I 4GI3C 1PPFI 4UXHA 2SGDI 1SGDI 1LR9A 1CT2I 1AN1I 4A24A 2E5RA 2N52A 2DIPA 1TGSI 1WGTA 2N17A 2GKTI 1FY7A 2UVOA 1HJAI 1TBQR 2QQDA 2V1CA 3OXFA 4UXJA 1LR7A 2JXDA 1HPTA 1UVGA 1PCEA 1X4SA 1PTQA 2L7XA 4WP4A 1KBEA 2E73A 4UXIA 1MT1A 1VDDA 2NU3I 1SGNI 2CJSC 2KMRA 3OVOA 4AMLA 1BUSA 5FUVA 3E2IA 1NUBA 1Q9BA 2NU0I 3RU0A 3VDPA 4E1RA 1Y8FA 2ARPF 1S20A 4L9MA 3UEYA 4JCVE 1KBFA 3R5DA 7WGAA 1W4RA 2RC4A 5HQ8A 1HEVA 2B8TA 2WGCA 4DNCA 2B0UC 1HDLA 1Z7KB 1SGQI 2SGEI 2Y0MA 3TOAA 2YQPA 3B4VC 3CXLA 3SEKC 2QQ0A 3FSYA 3QAHA 1FYBA 1CGII 1WTJA 2ERWA 2GKRI 1Y1CA 2NU2I 2LB7A 2SGFI 5CCLA 2J87A 1NXUA 2DKVA 3R5BA 1V1IA
chains in the Genus database with same CATH topology
2X52A 1WGCA 1ULMA 1ULKA 1K7UA 1ULNA 4AMLA 1UHAA 2CWGA 1Q9BA 1WKXA 7WGAA 1K7VA 1K7TA 1HEVA 4MPIA 2WGCA 1P9ZA 2X3TA 1WGTA 2UVOA 1P9GA 2LB7A 9WGAA 4WP4A 2DKVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2X52 A;  1WGC A;  1ULM A;  1ULK A;  1K7U A;  1ULN A;  4AML A;  1UHA A;  2CWG A;  1Q9B A;  1WKX A;  7WGA A;  1K7V A;  1K7T A;  1HEV A;  4MPI A;  2WGC A;  1P9Z A;  2X3T A;  1WGT A;  2UVO A;  1P9G A;  2LB7 A;  9WGA A;  4WP4 A;  2DKV A; 
#chains in the Genus database with same CATH topology
 1ULM A;  2V1C C;  1ULK A;  2PQ8 A;  1BMO A;  1K7U A;  1MJ9 A;  5CCM A;  2JW6 A;  2CWG A;  3UGD A;  2N1A B;  1RFH A;  1WKX A;  2NU1 I;  2GVI A;  3UEJ A;  1OMU A;  1R0R I;  3D00 A;  5E3Q A;  2JA1 A;  1SGE I;  2QQC A;  3OXL A;  5EX0 A;  1K7V A;  1CSO I;  2KCX A;  2N71 A;  5DAE A;  5J8F A;  1TBN A;  2ORV A;  2SGP I;  2YUU A;  1SGP I;  1KMA A;  1P9Z A;  2OD1 A;  5HI7 A;  3QWP A;  2OZU A;  1OMT A;  5JHW C;  1SGR I;  1TIH A;  3QTL D;  5FUY A;  1H0Z A;  3TO7 A;  1DS3 I;  2W0T A;  2CWH A;  2SGQ I;  2ODD A;  1M8B A;  1P9G A;  2QQE A;  1UVF A;  2JZM A;  2WCY A;  3VDU A;  1CGJ I;  2QPO A;  3R5C A;  2DB6 A;  2A20 A;  2X52 A;  2JYY A;  2ENZ A;  3MEK A;  2LUY A;  3UGL A;  1IW4 A;  2ELI A;  1FAR A;  5FUX A;  3R5A A;  2KMP A;  3UOE A;  2P6A C;  2K9H A;  3TOB A;  2F3C I;  1YU6 C;  3SGQ I;  1TUS A;  3TO9 A;  1M8C A;  5E3P A;  1W3S A;  1R79 A;  1SGY I;  1Z2I A;  5EX3 A;  3TO6 A;  3GOX A;  1XBT A;  1LR8 A;  2LEO A;  3OL0 A;  1MJB A;  3OXG A;  2ROW A;  2UZ3 A;  1K7T A;  5E3R A;  2GKV A;  4MPI A;  1IY6 A;  2FNF X;  1V1H A;  1PTR A;  2X3T A;  4FKD A;  3VE5 A;  1IY5 A;  1PJU A;  1MJA A;  3UFF A;  5FUW A;  4E1P A;  2J9R A;  2VRW B;  1OVO A;  3E59 A;  1DS2 I;  3PDN A;  1UUC A;  4HGU A;  1N13 A;  2CWF A;  1TBO A;  1TOT A;  1TBR R;  2M5X A;  9WGA A;  3TJQ A;  3FSX A;  4SGB I;  2V53 A;  2WVJ A;  2KMQ A;  2GIV A;  1WGC A;  3UGI A;  1X74 A;  2L8E A;  3KY9 A;  1U5K A;  2KMO A;  2OVO A;  2RIJ A;  1XA6 A;  2ENN A;  1ULN A;  1Y1B A;  1UHA A;  3SGB I;  1CT0 I;  2OU2 A;  2BUS A;  2ORW A;  3HH2 C;  1YTP A;  4OVO A;  4B6D A;  1CT4 I;  1XX6 A;  2XRC A;  1CE3 A;  1FAQ A;  5J8C A;  1CHO I;  1OYV I;  1TUR A;  3FC3 A;  3BJI A;  2NU4 I;  4GI3 C;  1PPF I;  4UXH A;  2SGD I;  1SGD I;  1LR9 A;  1CT2 I;  1AN1 I;  4A24 A;  2E5R A;  2N52 A;  2DIP A;  1TGS I;  1WGT A;  2N17 A;  2GKT I;  1FY7 A;  2UVO A;  1HJA I;  1TBQ R;  2QQD A;  2V1C A;  3OXF A;  4UXJ A;  1LR7 A;  2JXD A;  1HPT A;  1UVG A;  1PCE A;  1X4S A;  1PTQ A;  2L7X A;  4WP4 A;  1KBE A;  2E73 A;  4UXI A;  1MT1 A;  1VDD A;  2NU3 I;  1SGN I;  2CJS C;  2KMR A;  3OVO A;  4AML A;  1BUS A;  5FUV A;  3E2I A;  1NUB A;  1Q9B A;  2NU0 I;  3RU0 A;  3VDP A;  4E1R A;  1Y8F A;  2ARP F;  1S20 A;  4L9M A;  3UEY A;  4JCV E;  1KBF A;  3R5D A;  7WGA A;  1W4R A;  2RC4 A;  5HQ8 A;  1HEV A;  2B8T A;  2WGC A;  4DNC A;  2B0U C;  1HDL A;  1Z7K B;  1SGQ I;  2SGE I;  2Y0M A;  3TOA A;  2YQP A;  3B4V C;  3CXL A;  3SEK C;  2QQ0 A;  3FSY A;  3QAH A;  1FYB A;  1CGI I;  1WTJ A;  2ERW A;  2GKR I;  1Y1C A;  2NU2 I;  2LB7 A;  2SGF I;  5CCL A;  2J87 A;  1NXU A;  2DKV A;  3R5B A;  1V1I A; 
#chains in the Genus database with same CATH homology
 2X52 A;  1WGC A;  1ULM A;  1ULK A;  1K7U A;  1ULN A;  4AML A;  1UHA A;  2CWG A;  1Q9B A;  1WKX A;  7WGA A;  1K7V A;  1K7T A;  1HEV A;  4MPI A;  2WGC A;  1P9Z A;  2X3T A;  1WGT A;  2UVO A;  1P9G A;  2LB7 A;  9WGA A;  4WP4 A;  2DKV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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