1UHAA

Crystal structure of pokeweed lectin-d2
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
82
structure length
82
Chain Sequence
APECGERASGKRCPNGKCCSQWGYCGTTDNYCGQGCQSQCDYWRCGRDFGGRLCEEDMCCSKYGWCGYSDDHCEDGCQSQCD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Sugar binding protein
molecule keywords lectin-D2
publication title Structures of two lectins from the roots of pokeweed (Phytolacca americana).
pubmed doi rcsb
total genus 26
structure length 82
sequence length 82
ec nomenclature
pdb deposition date 2003-06-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00187 Chitin_bind_1 Chitin recognition protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 1uhaA02
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 1uhaA01
2LB7A 4MPIA 1K7UA 1P9ZA 4WP4A 1HEVA 4AMLA 2X3TA 2UVOA 1P9GA 1K7VA 1UHAA 1ULMA 2CWGA 1Q9BA 1WKXA 7WGAA 2DKVA 1WGCA 1K7TA 9WGAA 1ULNA 1ULKA 2X52A 2WGCA 1WGTA
chains in the Genus database with same CATH superfamily
3TO7A 2OVOA 4WP4A 5HI7A 1VDDA 3QWPA 2DB6A 1IY5A 3RU0A 1XA6A 1FAQA 1TGSI 3OL0A 3PDNA 3VDUA 2SGQI 5CCLA 2UVOA 2LEOA 3R5BA 1TBQR 2JXDA 1R79A 2CWGA 1LR8A 1LR9A 2CWFA 5CCMA 2UZ3A 1FY7A 3SGBI 1R0RI 1Z2IA 3OVOA 1WGCA 3OXFA 2JW6A 1CT4I 1YTPA 1SGNI 2M5XA 2RIJA 5FUYA 3SEKC 5FUXA 3UEYA 2JA1A 1IY6A 9WGAA 1BUSA 1NUBA 1AN1I 1W3SA 1S20A 1CE3A 1WTJA 2GKVA 3SGQI 2LUYA 2WVJA 1U5KA 4E1RA 1YU6C 1SGEI 1X74A 4A24A 1FYBA 1TURA 3OXLA 1PCEA 1SGQI 2N17A 3VDPA 4B6DA 1H0ZA 1P9ZA 2KMQA 3BJIA 4FKDA 4SGBI 2W0TA 3R5AA 4AMLA 1TUSA 1CSOI 2QPOA 2V1CA 5HQ8A 1LR7A 5J8FA 2ARPF 2N1AB 3UEJA 2DIPA 1CGJI 2ENNA 1X4SA 2J87A 2K9HA 2JZMA 1DS3I 1ULMA 1MJAA 1MJ9A 2FNFX 2JYYA 1MJBA 4HGUA 7WGAA 3E2IA 2DKVA 1XX6A 3UOEA 3GOXA 1RFHA 2Y0MA 5EX0A 5JHWC 1CHOI 2CJSC 2KMPA 3HH2C 2GKTI 2QQEA 4DNCA 2ORWA 2KMOA 2V1CC 1W4RA 3UGLA 1CGII 2A20A 1ULKA 4UXJA 3UGIA 2KCXA 2X52A 1SGYI 3FSYA 1PJUA 3TO9A 4JCVE 5DAEA 2NU2I 2OZUA 1FARA 1TOTA 2GKRI 2N52A 3E59A 2YQPA 3B4VC 1OYVI 1CT0I 1Z7KB 2V53A 1M8BA 5J8CA 2QQ0A 3FSXA 2P6AC 3VE5A 1BMOA 4OVOA 2NU4I 3MEKA 1P9GA 1UHAA 5E3QA 3TOAA 1TIHA 2NU3I 3CXLA 2L8EA 2SGEI 1OMUA 4UXIA 5E3PA 2N71A 1HJAI 4GI3C 2OD1A 1UUCA 1KBEA 1OMTA 1PTRA 1XBTA 1Y1BA 1HPTA 2WCYA 1TBOA 2YUUA 5FUVA 1MT1A 3QAHA 3QTLD 1DS2I 1ULNA 2ORVA 1Y8FA 1M8CA 2SGDI 2ELIA 2WGCA 1NXUA 2ROWA 5E3RA 2E73A 2F3CI 1KMAA 2LB7A 3D00A 4MPIA 1K7UA 1TBNA 2PQ8A 3TOBA 2VRWB 1HEVA 2GIVA 2ENZA 2RC4A 2SGPI 2QQDA 3UGDA 2XRCA 3KY9A 4L9MA 1SGPI 3UFFA 2ERWA 2X3TA 2GVIA 2KMRA 1OVOA 4UXHA 1IW4A 2J9RA 2SGFI 1K7VA 3R5CA 2NU1I 1Y1CA 2L7XA 3OXGA 1Q9BA 1WKXA 1KBFA 1UVFA 3R5DA 5EX3A 1SGDI 4E1PA 2B8TA 1V1IA 1UVGA 1N13A 1SGRI 5FUWA 3TJQA 2B0UC 2BUSA 2QQCA 1K7TA 2ODDA 1PPFI 1TBRR 1PTQA 2OU2A 3FC3A 2E5RA 1HDLA 1CT2I 1WGTA 1V1HA 2NU0I 3TO6A 2CWHA
chains in the Genus database with same CATH topology
2LB7A 4MPIA 1K7UA 1P9ZA 4WP4A 1HEVA 4AMLA 2X3TA 2UVOA 1P9GA 1K7VA 1UHAA 1ULMA 2CWGA 1Q9BA 1WKXA 7WGAA 2DKVA 1WGCA 1K7TA 9WGAA 1ULNA 1ULKA 2X52A 2WGCA 1WGTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2LB7 A;  4MPI A;  1K7U A;  1P9Z A;  4WP4 A;  1HEV A;  4AML A;  2X3T A;  2UVO A;  1P9G A;  1K7V A;  1UHA A;  1ULM A;  2CWG A;  1Q9B A;  1WKX A;  7WGA A;  2DKV A;  1WGC A;  1K7T A;  9WGA A;  1ULN A;  1ULK A;  2X52 A;  2WGC A;  1WGT A; 
#chains in the Genus database with same CATH topology
 3TO7 A;  2OVO A;  4WP4 A;  5HI7 A;  1VDD A;  3QWP A;  2DB6 A;  1IY5 A;  3RU0 A;  1XA6 A;  1FAQ A;  1TGS I;  3OL0 A;  3PDN A;  3VDU A;  2SGQ I;  5CCL A;  2UVO A;  2LEO A;  3R5B A;  1TBQ R;  2JXD A;  1R79 A;  2CWG A;  1LR8 A;  1LR9 A;  2CWF A;  5CCM A;  2UZ3 A;  1FY7 A;  3SGB I;  1R0R I;  1Z2I A;  3OVO A;  1WGC A;  3OXF A;  2JW6 A;  1CT4 I;  1YTP A;  1SGN I;  2M5X A;  2RIJ A;  5FUY A;  3SEK C;  5FUX A;  3UEY A;  2JA1 A;  1IY6 A;  9WGA A;  1BUS A;  1NUB A;  1AN1 I;  1W3S A;  1S20 A;  1CE3 A;  1WTJ A;  2GKV A;  3SGQ I;  2LUY A;  2WVJ A;  1U5K A;  4E1R A;  1YU6 C;  1SGE I;  1X74 A;  4A24 A;  1FYB A;  1TUR A;  3OXL A;  1PCE A;  1SGQ I;  2N17 A;  3VDP A;  4B6D A;  1H0Z A;  1P9Z A;  2KMQ A;  3BJI A;  4FKD A;  4SGB I;  2W0T A;  3R5A A;  4AML A;  1TUS A;  1CSO I;  2QPO A;  2V1C A;  5HQ8 A;  1LR7 A;  5J8F A;  2ARP F;  2N1A B;  3UEJ A;  2DIP A;  1CGJ I;  2ENN A;  1X4S A;  2J87 A;  2K9H A;  2JZM A;  1DS3 I;  1ULM A;  1MJA A;  1MJ9 A;  2FNF X;  2JYY A;  1MJB A;  4HGU A;  7WGA A;  3E2I A;  2DKV A;  1XX6 A;  3UOE A;  3GOX A;  1RFH A;  2Y0M A;  5EX0 A;  5JHW C;  1CHO I;  2CJS C;  2KMP A;  3HH2 C;  2GKT I;  2QQE A;  4DNC A;  2ORW A;  2KMO A;  2V1C C;  1W4R A;  3UGL A;  1CGI I;  2A20 A;  1ULK A;  4UXJ A;  3UGI A;  2KCX A;  2X52 A;  1SGY I;  3FSY A;  1PJU A;  3TO9 A;  4JCV E;  5DAE A;  2NU2 I;  2OZU A;  1FAR A;  1TOT A;  2GKR I;  2N52 A;  3E59 A;  2YQP A;  3B4V C;  1OYV I;  1CT0 I;  1Z7K B;  2V53 A;  1M8B A;  5J8C A;  2QQ0 A;  3FSX A;  2P6A C;  3VE5 A;  1BMO A;  4OVO A;  2NU4 I;  3MEK A;  1P9G A;  1UHA A;  5E3Q A;  3TOA A;  1TIH A;  2NU3 I;  3CXL A;  2L8E A;  2SGE I;  1OMU A;  4UXI A;  5E3P A;  2N71 A;  1HJA I;  4GI3 C;  2OD1 A;  1UUC A;  1KBE A;  1OMT A;  1PTR A;  1XBT A;  1Y1B A;  1HPT A;  2WCY A;  1TBO A;  2YUU A;  5FUV A;  1MT1 A;  3QAH A;  3QTL D;  1DS2 I;  1ULN A;  2ORV A;  1Y8F A;  1M8C A;  2SGD I;  2ELI A;  2WGC A;  1NXU A;  2ROW A;  5E3R A;  2E73 A;  2F3C I;  1KMA A;  2LB7 A;  3D00 A;  4MPI A;  1K7U A;  1TBN A;  2PQ8 A;  3TOB A;  2VRW B;  1HEV A;  2GIV A;  2ENZ A;  2RC4 A;  2SGP I;  2QQD A;  3UGD A;  2XRC A;  3KY9 A;  4L9M A;  1SGP I;  3UFF A;  2ERW A;  2X3T A;  2GVI A;  2KMR A;  1OVO A;  4UXH A;  1IW4 A;  2J9R A;  2SGF I;  1K7V A;  3R5C A;  2NU1 I;  1Y1C A;  2L7X A;  3OXG A;  1Q9B A;  1WKX A;  1KBF A;  1UVF A;  3R5D A;  5EX3 A;  1SGD I;  4E1P A;  2B8T A;  1V1I A;  1UVG A;  1N13 A;  1SGR I;  5FUW A;  3TJQ A;  2B0U C;  2BUS A;  2QQC A;  1K7T A;  2ODD A;  1PPF I;  1TBR R;  1PTQ A;  2OU2 A;  3FC3 A;  2E5R A;  1HDL A;  1CT2 I;  1WGT A;  1V1H A;  2NU0 I;  3TO6 A;  2CWH A; 
#chains in the Genus database with same CATH homology
 2LB7 A;  4MPI A;  1K7U A;  1P9Z A;  4WP4 A;  1HEV A;  4AML A;  2X3T A;  2UVO A;  1P9G A;  1K7V A;  1UHA A;  1ULM A;  2CWG A;  1Q9B A;  1WKX A;  7WGA A;  2DKV A;  1WGC A;  1K7T A;  9WGA A;  1ULN A;  1ULK A;  2X52 A;  2WGC A;  1WGT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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