1Y8FA

Solution structure of the munc13-1 c1-domain
Total Genus 5
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
5
sequence length
51
structure length
51
Chain Sequence
QHNFEVWTATTPTYCYECEGLLWGIARQGMRCTECGVKCHEKCQDLLNADC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Endocytosis/exocytosis,signaling protein
source organism Rattus norvegicus
publication title Intramolecular occlusion of the diacylglycerol-binding site in the C1 domain of munc13-1.
pubmed doi rcsb
molecule keywords Unc-13 homolog A
total genus 5
structure length 51
sequence length 51
ec nomenclature
pdb deposition date 2004-12-12
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.20 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 1y8fA00
3UGIA 1PTQA 1XX6A 2WVJA 3CXLA 4B6DA 4FKDA 1KBEA 5FUXA 2QQ0A 1R79A 3UEJA 2FNFX 2QPOA 2ELIA 2J9RA 4UXHA 2B8TA 1TBNA 2E73A 2J87A 3E2IA 4UXJA 2ENZA 5FUWA 2DB6A 2UZ3A 2ORWA 1FAQA 2ORVA 2ROWA 3KY9A 2VRWB 3UGDA 1TBOA 1FARA 5FUYA 3UEYA 4UXIA 1PTRA 2QQEA 2YUUA 1XA6A 1KBFA 1RFHA 2JA1A 1W4RA 1Y8FA 5FUVA 2GVIA 3UGLA 3BJIA 1XBTA 4L9MA 3UFFA 2ENNA
chains in the Genus database with same CATH superfamily
1PCEA 2B0UC 1TUSA 2JXDA 2L8EA 5E3PA 5CCMA 3UOEA 1MJBA 2GKVA 1HDLA 1CT4I 2CWGA 5EX0A 2OD1A 1M8CA 3RU0A 2GIVA 2DKVA 2OZUA 3FC3A 2V53A 1UUCA 1TURA 1OMTA 3OXGA 2E73A 1KMAA 5CCLA 3VDUA 1FY7A 4UXJA 9WGAA 1CT0I 2ARPF 3QWPA 4E1PA 1FAQA 2ROWA 1IY6A 2VRWB 2KMQA 2WCYA 1TBOA 2F3CI 1HJAI 1M8BA 5FUYA 2NU1I 5J8CA 1WGCA 2CWFA 2YUUA 1TBQR 1NXUA 2NU2I 1XA6A 2KMOA 2JA1A 1ULMA 1Y8FA 1W3SA 1WKXA 2GKTI 1S20A 2ENNA 1K7TA 1Z2IA 1P9GA 2JYYA 2OVOA 1HPTA 2E5RA 5E3RA 3TO6A 1CHOI 3FSXA 1XX6A 3QTLD 3TOBA 1IW4A 4FKDA 1KBEA 1PPFI 2P6AC 3E59A 2QQ0A 1R79A 5FUXA 1SGPI 2FNFX 4E1RA 1X74A 1SGQI 1Y1CA 1DS3I 2ELIA 1TIHA 2WGCA 3SEKC 5JHWC 4DNCA 3VDPA 1NUBA 2L7XA 1TBNA 2N52A 2NU0I 2Y0MA 3E2IA 2CJSC 3TOAA 1CE3A 1HEVA 1YU6C 4JCVE 2SGFI 1R0RI 3HH2C 3SGBI 5HQ8A 2N71A 1ULNA 1VDDA 4GI3C 3UEYA 4UXIA 2QQCA 5E3QA 1OVOA 2NU3I 3R5DA 2KMPA 5DAEA 1RFHA 1KBFA 2N1AB 3R5CA 2A20A 3OL0A 1LR7A 2LB7A 5FUVA 1XBTA 2LEOA 3UFFA 3QAHA 1IY5A 3UGIA 2V1CA 1MT1A 4AMLA 2LUYA 2WVJA 1YTPA 2BUSA 3CXLA 1CGII 1AN1I 2SGQI 3SGQI 3MEKA 1WTJA 4UXHA 1FYBA 1MJAA 1SGEI 3GOXA 2B8TA 1WGTA 4MPIA 3TO7A 1Q9BA 1N13A 2XRCA 2ERWA 2JZMA 2SGDI 1Z7KB 1UVGA 2RIJA 2X3TA 3OVOA 1OYVI 1SGRI 2GKRI 2ORWA 2UZ3A 2SGPI 3VE5A 2X52A 1UVFA 3UGDA 1H0ZA 3FSYA 3TJQA 5EX3A 1SGYI 1TBRR 1PTRA 2RC4A 2N17A 2CWHA 3B4VC 1V1HA 1UHAA 1K7VA 2GVIA 2W0TA 4HGUA 4L9MA 1BUSA 1P9ZA 2YQPA 2NU4I 3PDNA 5HI7A 7WGAA 1BMOA 1ULKA 3R5AA 1PTQA 2QQDA 2DIPA 1K7UA 3R5BA 4B6DA 3UEJA 1TOTA 2KCXA 2M5XA 1SGNI 2QPOA 5J8FA 2J9RA 2V1CC 4OVOA 4SGBI 1U5KA 3D00A 2J87A 1V1IA 3OXLA 3BJIA 2PQ8A 2JW6A 1X4SA 2ENZA 5FUWA 1Y1BA 2DB6A 1CGJI 1LR8A 1TGSI 2K9HA 2ORVA 1OMUA 3KY9A 1MJ9A 1FARA 1PJUA 1SGDI 2KMRA 2OU2A 2ODDA 1CT2I 2SGEI 2QQEA 3OXFA 1LR9A 1W4RA 2UVOA 1CSOI 4WP4A 3TO9A 3UGLA 1DS2I 4A24A
chains in the Genus database with same CATH topology
1PCEA 2B0UC 1TUSA 2JXDA 2L8EA 5CCMA 1HDLA 2GKVA 1CT4I 5EX0A 2OD1A 1M8CA 3RU0A 3FC3A 2V53A 1UUCA 1TURA 1OMTA 3OXGA 2E73A 1KMAA 5CCLA 3VDUA 4UXJA 1CT0I 2ARPF 3QWPA 4E1PA 1FAQA 2ROWA 1IY6A 2VRWB 2KMQA 2WCYA 1TBOA 2F3CI 1HJAI 1M8BA 5FUYA 2NU1I 2YUUA 1TBQR 2NU2I 1XA6A 2KMOA 2JA1A 1Y8FA 1W3SA 2GKTI 2ENNA 2OVOA 2JYYA 1HPTA 2E5RA 1CHOI 3QTLD 1XX6A 1IW4A 4FKDA 1KBEA 1PPFI 2P6AC 3E59A 2QQ0A 1R79A 5FUXA 1SGPI 2FNFX 4E1RA 1X74A 1SGQI 1Y1CA 1DS3I 2ELIA 1TIHA 3SEKC 5JHWC 3VDPA 1NUBA 2L7XA 1TBNA 2N52A 2NU0I 3E2IA 2CJSC 1CE3A 1YU6C 4JCVE 2SGFI 1R0RI 3HH2C 3SGBI 5HQ8A 2N71A 1VDDA 4GI3C 3UEYA 4UXIA 2QQCA 1OVOA 2NU3I 2KMPA 5DAEA 1RFHA 1KBFA 2N1AB 2A20A 3OL0A 1LR7A 5FUVA 1XBTA 2LEOA 3UFFA 1IY5A 3UGIA 2V1CA 1MT1A 2LUYA 2WVJA 1YTPA 2BUSA 3CXLA 1CGII 1AN1I 2SGQI 3SGQI 3MEKA 4UXHA 1FYBA 1SGEI 3GOXA 2B8TA 1N13A 2XRCA 2ERWA 2JZMA 2SGDI 1Z7KB 1UVGA 3OVOA 1OYVI 1SGRI 2GKRI 2ORWA 2UZ3A 2SGPI 3VE5A 1UVFA 3UGDA 1H0ZA 3TJQA 5EX3A 1SGYI 1TBRR 1PTRA 2N17A 3B4VC 1V1HA 2GVIA 2W0TA 4HGUA 4L9MA 1BUSA 2YQPA 2NU4I 3PDNA 5HI7A 1BMOA 1PTQA 2QQDA 2DIPA 4B6DA 3UEJA 1TOTA 2KCXA 2M5XA 1SGNI 2QPOA 2J9RA 2V1CC 4OVOA 4SGBI 1U5KA 3D00A 2J87A 1V1IA 3OXLA 3BJIA 2JW6A 1X4SA 2ENZA 5FUWA 1Y1BA 2DB6A 1CGJI 1LR8A 1TGSI 2K9HA 2ORVA 1OMUA 3KY9A 1FARA 1PJUA 1SGDI 2KMRA 2ODDA 1CT2I 2SGEI 2QQEA 3OXFA 1LR9A 1W4RA 1CSOI 3UGLA 1DS2I 4A24A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3UGI A;  1PTQ A;  1XX6 A;  2WVJ A;  3CXL A;  4B6D A;  4FKD A;  1KBE A;  5FUX A;  2QQ0 A;  1R79 A;  3UEJ A;  2FNF X;  2QPO A;  2ELI A;  2J9R A;  4UXH A;  2B8T A;  1TBN A;  2E73 A;  2J87 A;  3E2I A;  4UXJ A;  2ENZ A;  5FUW A;  2DB6 A;  2UZ3 A;  2ORW A;  1FAQ A;  2ORV A;  2ROW A;  3KY9 A;  2VRW B;  3UGD A;  1TBO A;  1FAR A;  5FUY A;  3UEY A;  4UXI A;  1PTR A;  2QQE A;  2YUU A;  1XA6 A;  1KBF A;  1RFH A;  2JA1 A;  1W4R A;  1Y8F A;  5FUV A;  2GVI A;  3UGL A;  3BJI A;  1XBT A;  4L9M A;  3UFF A;  2ENN A; 
#chains in the Genus database with same CATH topology
 1PCE A;  2B0U C;  1TUS A;  2JXD A;  2L8E A;  5E3P A;  5CCM A;  3UOE A;  1MJB A;  2GKV A;  1HDL A;  1CT4 I;  2CWG A;  5EX0 A;  2OD1 A;  1M8C A;  3RU0 A;  2GIV A;  2DKV A;  2OZU A;  3FC3 A;  2V53 A;  1UUC A;  1TUR A;  1OMT A;  3OXG A;  2E73 A;  1KMA A;  5CCL A;  3VDU A;  1FY7 A;  4UXJ A;  9WGA A;  1CT0 I;  2ARP F;  3QWP A;  4E1P A;  1FAQ A;  2ROW A;  1IY6 A;  2VRW B;  2KMQ A;  2WCY A;  1TBO A;  2F3C I;  1HJA I;  1M8B A;  5FUY A;  2NU1 I;  5J8C A;  1WGC A;  2CWF A;  2YUU A;  1TBQ R;  1NXU A;  2NU2 I;  1XA6 A;  2KMO A;  2JA1 A;  1ULM A;  1Y8F A;  1W3S A;  1WKX A;  2GKT I;  1S20 A;  2ENN A;  1K7T A;  1Z2I A;  1P9G A;  2JYY A;  2OVO A;  1HPT A;  2E5R A;  5E3R A;  3TO6 A;  1CHO I;  3FSX A;  1XX6 A;  3QTL D;  3TOB A;  1IW4 A;  4FKD A;  1KBE A;  1PPF I;  2P6A C;  3E59 A;  2QQ0 A;  1R79 A;  5FUX A;  1SGP I;  2FNF X;  4E1R A;  1X74 A;  1SGQ I;  1Y1C A;  1DS3 I;  2ELI A;  1TIH A;  2WGC A;  3SEK C;  5JHW C;  4DNC A;  3VDP A;  1NUB A;  2L7X A;  1TBN A;  2N52 A;  2NU0 I;  2Y0M A;  3E2I A;  2CJS C;  3TOA A;  1CE3 A;  1HEV A;  1YU6 C;  4JCV E;  2SGF I;  1R0R I;  3HH2 C;  3SGB I;  5HQ8 A;  2N71 A;  1ULN A;  1VDD A;  4GI3 C;  3UEY A;  4UXI A;  2QQC A;  5E3Q A;  1OVO A;  2NU3 I;  3R5D A;  2KMP A;  5DAE A;  1RFH A;  1KBF A;  2N1A B;  3R5C A;  2A20 A;  3OL0 A;  1LR7 A;  2LB7 A;  5FUV A;  1XBT A;  2LEO A;  3UFF A;  3QAH A;  1IY5 A;  3UGI A;  2V1C A;  1MT1 A;  4AML A;  2LUY A;  2WVJ A;  1YTP A;  2BUS A;  3CXL A;  1CGI I;  1AN1 I;  2SGQ I;  3SGQ I;  3MEK A;  1WTJ A;  4UXH A;  1FYB A;  1MJA A;  1SGE I;  3GOX A;  2B8T A;  1WGT A;  4MPI A;  3TO7 A;  1Q9B A;  1N13 A;  2XRC A;  2ERW A;  2JZM A;  2SGD I;  1Z7K B;  1UVG A;  2RIJ A;  2X3T A;  3OVO A;  1OYV I;  1SGR I;  2GKR I;  2ORW A;  2UZ3 A;  2SGP I;  3VE5 A;  2X52 A;  1UVF A;  3UGD A;  1H0Z A;  3FSY A;  3TJQ A;  5EX3 A;  1SGY I;  1TBR R;  1PTR A;  2RC4 A;  2N17 A;  2CWH A;  3B4V C;  1V1H A;  1UHA A;  1K7V A;  2GVI A;  2W0T A;  4HGU A;  4L9M A;  1BUS A;  1P9Z A;  2YQP A;  2NU4 I;  3PDN A;  5HI7 A;  7WGA A;  1BMO A;  1ULK A;  3R5A A;  1PTQ A;  2QQD A;  2DIP A;  1K7U A;  3R5B A;  4B6D A;  3UEJ A;  1TOT A;  2KCX A;  2M5X A;  1SGN I;  2QPO A;  5J8F A;  2J9R A;  2V1C C;  4OVO A;  4SGB I;  1U5K A;  3D00 A;  2J87 A;  1V1I A;  3OXL A;  3BJI A;  2PQ8 A;  2JW6 A;  1X4S A;  2ENZ A;  5FUW A;  1Y1B A;  2DB6 A;  1CGJ I;  1LR8 A;  1TGS I;  2K9H A;  2ORV A;  1OMU A;  3KY9 A;  1MJ9 A;  1FAR A;  1PJU A;  1SGD I;  2KMR A;  2OU2 A;  2ODD A;  1CT2 I;  2SGE I;  2QQE A;  3OXF A;  1LR9 A;  1W4R A;  2UVO A;  1CSO I;  4WP4 A;  3TO9 A;  3UGL A;  1DS2 I;  4A24 A; 
#chains in the Genus database with same CATH homology
 1PCE A;  2B0U C;  1TUS A;  2JXD A;  2L8E A;  5CCM A;  1HDL A;  2GKV A;  1CT4 I;  5EX0 A;  2OD1 A;  1M8C A;  3RU0 A;  3FC3 A;  2V53 A;  1UUC A;  1TUR A;  1OMT A;  3OXG A;  2E73 A;  1KMA A;  5CCL A;  3VDU A;  4UXJ A;  1CT0 I;  2ARP F;  3QWP A;  4E1P A;  1FAQ A;  2ROW A;  1IY6 A;  2VRW B;  2KMQ A;  2WCY A;  1TBO A;  2F3C I;  1HJA I;  1M8B A;  5FUY A;  2NU1 I;  2YUU A;  1TBQ R;  2NU2 I;  1XA6 A;  2KMO A;  2JA1 A;  1Y8F A;  1W3S A;  2GKT I;  2ENN A;  2OVO A;  2JYY A;  1HPT A;  2E5R A;  1CHO I;  3QTL D;  1XX6 A;  1IW4 A;  4FKD A;  1KBE A;  1PPF I;  2P6A C;  3E59 A;  2QQ0 A;  1R79 A;  5FUX A;  1SGP I;  2FNF X;  4E1R A;  1X74 A;  1SGQ I;  1Y1C A;  1DS3 I;  2ELI A;  1TIH A;  3SEK C;  5JHW C;  3VDP A;  1NUB A;  2L7X A;  1TBN A;  2N52 A;  2NU0 I;  3E2I A;  2CJS C;  1CE3 A;  1YU6 C;  4JCV E;  2SGF I;  1R0R I;  3HH2 C;  3SGB I;  5HQ8 A;  2N71 A;  1VDD A;  4GI3 C;  3UEY A;  4UXI A;  2QQC A;  1OVO A;  2NU3 I;  2KMP A;  5DAE A;  1RFH A;  1KBF A;  2N1A B;  2A20 A;  3OL0 A;  1LR7 A;  5FUV A;  1XBT A;  2LEO A;  3UFF A;  1IY5 A;  3UGI A;  2V1C A;  1MT1 A;  2LUY A;  2WVJ A;  1YTP A;  2BUS A;  3CXL A;  1CGI I;  1AN1 I;  2SGQ I;  3SGQ I;  3MEK A;  4UXH A;  1FYB A;  1SGE I;  3GOX A;  2B8T A;  1N13 A;  2XRC A;  2ERW A;  2JZM A;  2SGD I;  1Z7K B;  1UVG A;  3OVO A;  1OYV I;  1SGR I;  2GKR I;  2ORW A;  2UZ3 A;  2SGP I;  3VE5 A;  1UVF A;  3UGD A;  1H0Z A;  3TJQ A;  5EX3 A;  1SGY I;  1TBR R;  1PTR A;  2N17 A;  3B4V C;  1V1H A;  2GVI A;  2W0T A;  4HGU A;  4L9M A;  1BUS A;  2YQP A;  2NU4 I;  3PDN A;  5HI7 A;  1BMO A;  1PTQ A;  2QQD A;  2DIP A;  4B6D A;  3UEJ A;  1TOT A;  2KCX A;  2M5X A;  1SGN I;  2QPO A;  2J9R A;  2V1C C;  4OVO A;  4SGB I;  1U5K A;  3D00 A;  2J87 A;  1V1I A;  3OXL A;  3BJI A;  2JW6 A;  1X4S A;  2ENZ A;  5FUW A;  1Y1B A;  2DB6 A;  1CGJ I;  1LR8 A;  1TGS I;  2K9H A;  2ORV A;  1OMU A;  3KY9 A;  1FAR A;  1PJU A;  1SGD I;  2KMR A;  2ODD A;  1CT2 I;  2SGE I;  2QQE A;  3OXF A;  1LR9 A;  1W4R A;  1CSO I;  3UGL A;  1DS2 I;  4A24 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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