1Y8FA

Solution structure of the munc13-1 c1-domain
Total Genus 5
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
5
sequence length
51
structure length
51
Chain Sequence
QHNFEVWTATTPTYCYECEGLLWGIARQGMRCTECGVKCHEKCQDLLNADC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Unc-13 homolog A
publication title Intramolecular occlusion of the diacylglycerol-binding site in the C1 domain of munc13-1.
pubmed doi rcsb
source organism Rattus norvegicus
molecule tags Endocytosis/exocytosis,signaling protein
total genus 5
structure length 51
sequence length 51
ec nomenclature
pdb deposition date 2004-12-12
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.20 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 1y8fA00
2J9RA 2ROWA 5FUVA 3E2IA 3BJIA 2FNFX 2WVJA 3UGDA 2JA1A 2QPOA 1XX6A 2YUUA 3UFFA 2QQ0A 1KBEA 2GVIA 3UEJA 1TBNA 1FAQA 4B6DA 4UXIA 2J87A 3UGLA 4FKDA 4L9MA 1Y8FA 1KBFA 1PTRA 4UXJA 3UEYA 1PTQA 2E73A 2ELIA 2ENZA 1R79A 1XBTA 2ENNA 3UGIA 1FARA 3CXLA 5FUWA 5FUXA 5FUYA 2UZ3A 2ORWA 3KY9A 2B8TA 1RFHA 4UXHA 2DB6A 2QQEA 2ORVA 2VRWB 1XA6A 1W4RA 1TBOA
chains in the Genus database with same CATH superfamily
9WGAA 1HPTA 2J9RA 2NU4I 5FUVA 5CCMA 4E1RA 1Z2IA 2ARPF 2UVOA 3UGDA 2KMOA 2YUUA 1KMAA 2GVIA 1NUBA 1TIHA 2JW6A 1LR7A 1SGQI 2SGDI 4HGUA 2KCXA 2J87A 1V1HA 2JXDA 5HQ8A 3UGLA 4FKDA 4L9MA 1SGEI 1Y8FA 2CWFA 2PQ8A 1CE3A 1MT1A 4A24A 1HDLA 1PTQA 2E73A 1W3SA 2ENZA 1R79A 1X74A 1XBTA 3UGIA 4WP4A 1WGCA 4OVOA 1BMOA 1UVFA 3KY9A 1HEVA 3GOXA 3OL0A 5DAEA 2OU2A 1CHOI 2W0TA 3OVOA 1XA6A 1OVOA 5HI7A 2GKRI 2ROWA 1OMTA 3E2IA 1U5KA 4AMLA 2KMQA 2N1AB 3SGQI 1IY6A 1S20A 2WVJA 1IW4A 2QPOA 1WKXA 1P9ZA 2OZUA 3QWPA 1TURA 3UEJA 5E3QA 7WGAA 1TOTA 2BUSA 3FC3A 2JZMA 1PPFI 1CGII 1TGSI 1Y1BA 1PTRA 2YQPA 2LB7A 1MJ9A 1HJAI 3E59A 2WCYA 1TBQR 3R5DA 4JCVE 3TJQA 1BUSA 1DS3I 5J8FA 1H0ZA 2SGPI 2RIJA 1R0RI 3VE5A 3CXLA 3SEKC 1YTPA 2KMRA 2CJSC 2A20A 2CWHA 2L7XA 1RFHA 1UHAA 1UVGA 1CSOI 2M5XA 2GKVA 2SGEI 2WGCA 2LEOA 1SGRI 2LUYA 1TBOA 2JA1A 1CGJI 4GI3C 1DS2I 1ULNA 2NU2I 3BJIA 3R5BA 1CT4I 1K7VA 1LR8A 2NU1I 2QQ0A 2NU0I 5E3PA 3D00A 2ODDA 1OMUA 1N13A 3FSYA 4DNCA 2SGFI 5JHWC 3FSXA 4SGBI 2Y0MA 1KBFA 1TUSA 4UXJA 2SGQI 2DIPA 4MPIA 3UEYA 3QAHA 2E5RA 3TO7A 2KMPA 1Y1CA 2ENNA 5EX3A 5EX0A 1FARA 5FUXA 3TOBA 1LR9A 5FUYA 1FYBA 2QQCA 1TBRR 3UOEA 1CT0I 2XRCA 3VDUA 1WGTA 2RC4A 1MJAA 1WTJA 3OXGA 1K7UA 1W4RA 3OXLA 3R5CA 1VDDA 1M8BA 2GKTI 3HH2C 1M8CA 2V53A 1Q9BA 5E3RA 2FNFX 1YU6C 1PCEA 2N17A 1K7TA 2K9HA 1XX6A 2X52A 3UFFA 1OYVI 2QQDA 3TO6A 5CCLA 1TBNA 1FAQA 1V1IA 1IY5A 1NXUA 4B6DA 1MJBA 1X4SA 4UXIA 2NU3I 2JYYA 1CT2I 1FY7A 2V1CA 1Z7KB 3MEKA 3TOAA 3R5AA 2OVOA 1AN1I 2X3TA 4E1PA 2ELIA 1P9GA 1SGYI 1SGDI 2CWGA 2GIVA 1SGPI 2P6AC 3VDPA 3PDNA 2DKVA 1ULMA 2N71A 3QTLD 2UZ3A 3OXFA 2ORWA 5FUWA 3SGBI 2F3CI 2B0UC 1SGNI 2B8TA 3B4VC 2DB6A 1ULKA 2OD1A 2QQEA 4UXHA 2ORVA 2V1CC 2VRWB 2L8EA 2N52A 3RU0A 5J8CA 3TO9A 1PJUA 1KBEA 1UUCA 2ERWA
chains in the Genus database with same CATH topology
1HPTA 2J9RA 2NU4I 5FUVA 5CCMA 4E1RA 2ARPF 3UGDA 2KMOA 2YUUA 1KMAA 2GVIA 1NUBA 1TIHA 2JW6A 1LR7A 1SGQI 2SGDI 4HGUA 2KCXA 2J87A 1V1HA 2JXDA 5HQ8A 3UGLA 4FKDA 4L9MA 1SGEI 1Y8FA 1CE3A 1MT1A 4A24A 1HDLA 1PTQA 2E73A 1W3SA 2ENZA 1R79A 1X74A 1XBTA 3UGIA 4OVOA 1BMOA 1UVFA 3KY9A 3GOXA 3OL0A 5DAEA 1CHOI 2W0TA 3OVOA 1XA6A 1OVOA 5HI7A 2GKRI 2ROWA 1OMTA 3E2IA 1U5KA 1IY6A 2KMQA 2N1AB 3SGQI 2WVJA 1IW4A 2QPOA 3QWPA 1TURA 3UEJA 1TOTA 2BUSA 3FC3A 2JZMA 1PPFI 1CGII 1TGSI 1Y1BA 1PTRA 2YQPA 3QTLD 1HJAI 3E59A 2WCYA 1TBQR 3TJQA 4JCVE 1BUSA 1DS3I 1H0ZA 2SGPI 1R0RI 3VE5A 3CXLA 3SEKC 1YTPA 2KMRA 2CJSC 2A20A 2L7XA 1RFHA 1UVGA 1CSOI 2M5XA 2GKVA 2SGEI 2LEOA 1SGRI 2LUYA 1TBOA 2JA1A 1CGJI 4GI3C 1DS2I 2NU2I 3BJIA 1CT4I 1LR8A 2NU1I 2QQ0A 2NU0I 3D00A 2ODDA 1OMUA 1N13A 2SGFI 5JHWC 4SGBI 1KBFA 1TUSA 4UXJA 2SGQI 2DIPA 3UEYA 2E5RA 2KMPA 1Y1CA 2ENNA 5EX3A 5EX0A 1FARA 5FUXA 1LR9A 5FUYA 1FYBA 2QQCA 1TBRR 1CT0I 2XRCA 3VDUA 3OXGA 1W4RA 3OXLA 1VDDA 1M8BA 2GKTI 3HH2C 1M8CA 2V53A 2FNFX 1YU6C 1PCEA 2N17A 2K9HA 1XX6A 3UFFA 1OYVI 2QQDA 5CCLA 1TBNA 1FAQA 1V1IA 1IY5A 4B6DA 1X4SA 4UXIA 2NU3I 2JYYA 1CT2I 2V1CA 1Z7KB 3MEKA 2OVOA 1AN1I 4E1PA 2ELIA 1SGYI 1SGDI 2P6AC 3VDPA 1SGPI 3PDNA 5FUWA 2N71A 2UZ3A 3OXFA 2ORWA 3SGBI 2F3CI 2B0UC 1SGNI 2B8TA 3B4VC 2DB6A 4UXHA 2OD1A 2QQEA 2ORVA 2V1CC 2VRWB 2L8EA 2N52A 3RU0A 1PJUA 1KBEA 1UUCA 2ERWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2J9R A;  2ROW A;  5FUV A;  3E2I A;  3BJI A;  2FNF X;  2WVJ A;  3UGD A;  2JA1 A;  2QPO A;  1XX6 A;  2YUU A;  3UFF A;  2QQ0 A;  1KBE A;  2GVI A;  3UEJ A;  1TBN A;  1FAQ A;  4B6D A;  4UXI A;  2J87 A;  3UGL A;  4FKD A;  4L9M A;  1Y8F A;  1KBF A;  1PTR A;  4UXJ A;  3UEY A;  1PTQ A;  2E73 A;  2ELI A;  2ENZ A;  1R79 A;  1XBT A;  2ENN A;  3UGI A;  1FAR A;  3CXL A;  5FUW A;  5FUX A;  5FUY A;  2UZ3 A;  2ORW A;  3KY9 A;  2B8T A;  1RFH A;  4UXH A;  2DB6 A;  2QQE A;  2ORV A;  2VRW B;  1XA6 A;  1W4R A;  1TBO A; 
#chains in the Genus database with same CATH topology
 9WGA A;  1HPT A;  2J9R A;  2NU4 I;  5FUV A;  5CCM A;  4E1R A;  1Z2I A;  2ARP F;  2UVO A;  3UGD A;  2KMO A;  2YUU A;  1KMA A;  2GVI A;  1NUB A;  1TIH A;  2JW6 A;  1LR7 A;  1SGQ I;  2SGD I;  4HGU A;  2KCX A;  2J87 A;  1V1H A;  2JXD A;  5HQ8 A;  3UGL A;  4FKD A;  4L9M A;  1SGE I;  1Y8F A;  2CWF A;  2PQ8 A;  1CE3 A;  1MT1 A;  4A24 A;  1HDL A;  1PTQ A;  2E73 A;  1W3S A;  2ENZ A;  1R79 A;  1X74 A;  1XBT A;  3UGI A;  4WP4 A;  1WGC A;  4OVO A;  1BMO A;  1UVF A;  3KY9 A;  1HEV A;  3GOX A;  3OL0 A;  5DAE A;  2OU2 A;  1CHO I;  2W0T A;  3OVO A;  1XA6 A;  1OVO A;  5HI7 A;  2GKR I;  2ROW A;  1OMT A;  3E2I A;  1U5K A;  4AML A;  2KMQ A;  2N1A B;  3SGQ I;  1IY6 A;  1S20 A;  2WVJ A;  1IW4 A;  2QPO A;  1WKX A;  1P9Z A;  2OZU A;  3QWP A;  1TUR A;  3UEJ A;  5E3Q A;  7WGA A;  1TOT A;  2BUS A;  3FC3 A;  2JZM A;  1PPF I;  1CGI I;  1TGS I;  1Y1B A;  1PTR A;  2YQP A;  2LB7 A;  1MJ9 A;  1HJA I;  3E59 A;  2WCY A;  1TBQ R;  3R5D A;  4JCV E;  3TJQ A;  1BUS A;  1DS3 I;  5J8F A;  1H0Z A;  2SGP I;  2RIJ A;  1R0R I;  3VE5 A;  3CXL A;  3SEK C;  1YTP A;  2KMR A;  2CJS C;  2A20 A;  2CWH A;  2L7X A;  1RFH A;  1UHA A;  1UVG A;  1CSO I;  2M5X A;  2GKV A;  2SGE I;  2WGC A;  2LEO A;  1SGR I;  2LUY A;  1TBO A;  2JA1 A;  1CGJ I;  4GI3 C;  1DS2 I;  1ULN A;  2NU2 I;  3BJI A;  3R5B A;  1CT4 I;  1K7V A;  1LR8 A;  2NU1 I;  2QQ0 A;  2NU0 I;  5E3P A;  3D00 A;  2ODD A;  1OMU A;  1N13 A;  3FSY A;  4DNC A;  2SGF I;  5JHW C;  3FSX A;  4SGB I;  2Y0M A;  1KBF A;  1TUS A;  4UXJ A;  2SGQ I;  2DIP A;  4MPI A;  3UEY A;  3QAH A;  2E5R A;  3TO7 A;  2KMP A;  1Y1C A;  2ENN A;  5EX3 A;  5EX0 A;  1FAR A;  5FUX A;  3TOB A;  1LR9 A;  5FUY A;  1FYB A;  2QQC A;  1TBR R;  3UOE A;  1CT0 I;  2XRC A;  3VDU A;  1WGT A;  2RC4 A;  1MJA A;  1WTJ A;  3OXG A;  1K7U A;  1W4R A;  3OXL A;  3R5C A;  1VDD A;  1M8B A;  2GKT I;  3HH2 C;  1M8C A;  2V53 A;  1Q9B A;  5E3R A;  2FNF X;  1YU6 C;  1PCE A;  2N17 A;  1K7T A;  2K9H A;  1XX6 A;  2X52 A;  3UFF A;  1OYV I;  2QQD A;  3TO6 A;  5CCL A;  1TBN A;  1FAQ A;  1V1I A;  1IY5 A;  1NXU A;  4B6D A;  1MJB A;  1X4S A;  4UXI A;  2NU3 I;  2JYY A;  1CT2 I;  1FY7 A;  2V1C A;  1Z7K B;  3MEK A;  3TOA A;  3R5A A;  2OVO A;  1AN1 I;  2X3T A;  4E1P A;  2ELI A;  1P9G A;  1SGY I;  1SGD I;  2CWG A;  2GIV A;  1SGP I;  2P6A C;  3VDP A;  3PDN A;  2DKV A;  1ULM A;  2N71 A;  3QTL D;  2UZ3 A;  3OXF A;  2ORW A;  5FUW A;  3SGB I;  2F3C I;  2B0U C;  1SGN I;  2B8T A;  3B4V C;  2DB6 A;  1ULK A;  2OD1 A;  2QQE A;  4UXH A;  2ORV A;  2V1C C;  2VRW B;  2L8E A;  2N52 A;  3RU0 A;  5J8C A;  3TO9 A;  1PJU A;  1KBE A;  1UUC A;  2ERW A; 
#chains in the Genus database with same CATH homology
 1HPT A;  2J9R A;  2NU4 I;  5FUV A;  5CCM A;  4E1R A;  2ARP F;  3UGD A;  2KMO A;  2YUU A;  1KMA A;  2GVI A;  1NUB A;  1TIH A;  2JW6 A;  1LR7 A;  1SGQ I;  2SGD I;  4HGU A;  2KCX A;  2J87 A;  1V1H A;  2JXD A;  5HQ8 A;  3UGL A;  4FKD A;  4L9M A;  1SGE I;  1Y8F A;  1CE3 A;  1MT1 A;  4A24 A;  1HDL A;  1PTQ A;  2E73 A;  1W3S A;  2ENZ A;  1R79 A;  1X74 A;  1XBT A;  3UGI A;  4OVO A;  1BMO A;  1UVF A;  3KY9 A;  3GOX A;  3OL0 A;  5DAE A;  1CHO I;  2W0T A;  3OVO A;  1XA6 A;  1OVO A;  5HI7 A;  2GKR I;  2ROW A;  1OMT A;  3E2I A;  1U5K A;  1IY6 A;  2KMQ A;  2N1A B;  3SGQ I;  2WVJ A;  1IW4 A;  2QPO A;  3QWP A;  1TUR A;  3UEJ A;  1TOT A;  2BUS A;  3FC3 A;  2JZM A;  1PPF I;  1CGI I;  1TGS I;  1Y1B A;  1PTR A;  2YQP A;  3QTL D;  1HJA I;  3E59 A;  2WCY A;  1TBQ R;  3TJQ A;  4JCV E;  1BUS A;  1DS3 I;  1H0Z A;  2SGP I;  1R0R I;  3VE5 A;  3CXL A;  3SEK C;  1YTP A;  2KMR A;  2CJS C;  2A20 A;  2L7X A;  1RFH A;  1UVG A;  1CSO I;  2M5X A;  2GKV A;  2SGE I;  2LEO A;  1SGR I;  2LUY A;  1TBO A;  2JA1 A;  1CGJ I;  4GI3 C;  1DS2 I;  2NU2 I;  3BJI A;  1CT4 I;  1LR8 A;  2NU1 I;  2QQ0 A;  2NU0 I;  3D00 A;  2ODD A;  1OMU A;  1N13 A;  2SGF I;  5JHW C;  4SGB I;  1KBF A;  1TUS A;  4UXJ A;  2SGQ I;  2DIP A;  3UEY A;  2E5R A;  2KMP A;  1Y1C A;  2ENN A;  5EX3 A;  5EX0 A;  1FAR A;  5FUX A;  1LR9 A;  5FUY A;  1FYB A;  2QQC A;  1TBR R;  1CT0 I;  2XRC A;  3VDU A;  3OXG A;  1W4R A;  3OXL A;  1VDD A;  1M8B A;  2GKT I;  3HH2 C;  1M8C A;  2V53 A;  2FNF X;  1YU6 C;  1PCE A;  2N17 A;  2K9H A;  1XX6 A;  3UFF A;  1OYV I;  2QQD A;  5CCL A;  1TBN A;  1FAQ A;  1V1I A;  1IY5 A;  4B6D A;  1X4S A;  4UXI A;  2NU3 I;  2JYY A;  1CT2 I;  2V1C A;  1Z7K B;  3MEK A;  2OVO A;  1AN1 I;  4E1P A;  2ELI A;  1SGY I;  1SGD I;  2P6A C;  3VDP A;  1SGP I;  3PDN A;  5FUW A;  2N71 A;  2UZ3 A;  3OXF A;  2ORW A;  3SGB I;  2F3C I;  2B0U C;  1SGN I;  2B8T A;  3B4V C;  2DB6 A;  4UXH A;  2OD1 A;  2QQE A;  2ORV A;  2V1C C;  2VRW B;  2L8E A;  2N52 A;  3RU0 A;  1PJU A;  1KBE A;  1UUC A;  2ERW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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