2ODDA

Solution structure of the mynd domain from aml1-eto complexed with smrt, a corepressor
Total Genus 8
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
8
sequence length
50
structure length
50
Chain Sequence
DSSESCWNCGRKASETCSGCNTARYCGSFCQHKDWEKHHHICGQTLQAQQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structural basis for recognition of SMRT/N-CoR by the MYND domain and its contribution to AML1/ETO's activity.
pubmed doi rcsb
molecule keywords SMRT
source organism Homo sapiens
molecule tags Metal binding protein
total genus 8
structure length 50
sequence length 50
ec nomenclature
pdb deposition date 2006-12-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01753 zf-MYND MYND finger
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.180 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 2oddA00
2JW6A 5HQ8A 3QWPA 2ODDA 3MEKA 3RU0A 5CCLA 3PDNA 3OXGA 3OXLA 4A24A 5EX0A 5CCMA 5EX3A 2OD1A 3OXFA 5HI7A
chains in the Genus database with same CATH superfamily
2NU0I 2KMQA 1K7VA 2PQ8A 4UXIA 3MEKA 2E73A 1WGTA 1CSOI 2UZ3A 3E2IA 1KMAA 1ULNA 2CWHA 1BUSA 1V1IA 2GKRI 5FUVA 4E1RA 2BUSA 1FYBA 3UGIA 1SGPI 1CT4I 2QQCA 3UOEA 1P9ZA 2FNFX 1IW4A 1AN1I 2K9HA 1FAQA 1TBNA 2V1CC 3OXLA 3HH2C 1SGDI 2ARPF 2GIVA 4OVOA 2ELIA 1PTRA 3SEKC 3VDUA 3VDPA 1LR7A 1HJAI 1XX6A 2DB6A 1CT2I 1P9GA 1DS2I 2SGDI 5E3PA 1UVGA 2F3CI 5J8CA 2QQ0A 4DNCA 1WGCA 4L9MA 3GOXA 1SGEI 3QAHA 4SGBI 1K7UA 4HGUA 1WKXA 2WGCA 5CCMA 1M8CA 2V53A 1TBOA 1Y1CA 1SGQI 1CGII 3BJIA 2Y0MA 1CT0I 3UEJA 5CCLA 2GKTI 1TOTA 4UXHA 1YTPA 1PTQA 3TO9A 1V1HA 3TO7A 1VDDA 1CGJI 2M5XA 1S20A 2QQEA 1FARA 3OXFA 1BMOA 1Z7KB 3UGLA 1Y1BA 1FY7A 2ODDA 3TOAA 2OZUA 2NU2I 1LR9A 1ULMA 4FKDA 4MPIA 1W4RA 2V1CA 3OVOA 2A20A 2SGEI 1XA6A 2LUYA 2RIJA 1LR8A 5J8FA 3PDNA 2RC4A 1SGYI 2X3TA 3E59A 2J87A 1MJ9A 2ENZA 2L8EA 5HI7A 3TOBA 2UVOA 1OMUA 3TO6A 7WGAA 5JHWC 1IY5A 1X4SA 2ORVA 3R5BA 1TUSA 1XBTA 5FUXA 3B4VC 1PJUA 4B6DA 5EX3A 2OD1A 1YU6C 3VE5A 1PCEA 2CJSC 4WP4A 1M8BA 2N1AB 2KCXA 2VRWB 3R5CA 2N17A 1SGRI 1HPTA 1OYVI 1UVFA 1UHAA 1NUBA 2YUUA 5EX0A 3OL0A 1X74A 2OU2A 4AMLA 2CWFA 2L7XA 1TBQR 1R0RI 2W0TA 2GVIA 1K7TA 1WTJA 3FSYA 1HEVA 1W3SA 1CE3A 1TURA 3UGDA 1MT1A 1H0ZA 1Z2IA 2NU4I 2X52A 3UFFA 1KBFA 2ENNA 1OMTA 3R5DA 4UXJA 1ULKA 1KBEA 3FC3A 5DAEA 3D00A 5E3QA 2ERWA 2DKVA 2KMRA 3R5AA 2KMOA 2JZMA 2YQPA 5FUYA 3UEYA 1TBRR 2JW6A 2LB7A 2WCYA 3QWPA 1UUCA 2ORWA 1HDLA 2NU3I 3FSXA 1TIHA 1TGSI 2JA1A 1OVOA 2E5RA 2JXDA 3QTLD 5HQ8A 2B8TA 2P6AC 1CHOI 3RU0A 3CXLA 1IY6A 2SGQI 2SGFI 1NXUA 4E1PA 2SGPI 3KY9A 5FUWA 1MJAA 1DS3I 1RFHA 1R79A 1Y8FA 1Q9BA 1U5KA 2NU1I 2QQDA 3OXGA 4GI3C 4A24A 3SGQI 2XRCA 2KMPA 2CWGA 2LEOA 2N71A 2GKVA 3TJQA 1MJBA 2ROWA 2J9RA 2B0UC 2JYYA 9WGAA 5E3RA 2N52A 2DIPA 3SGBI 1SGNI 1N13A 2QPOA 2OVOA 4JCVE 2WVJA 1PPFI
chains in the Genus database with same CATH topology
2NU0I 2KMQA 4UXIA 3MEKA 2E73A 2UZ3A 1CSOI 1KMAA 3E2IA 1BUSA 1V1IA 2GKRI 5FUVA 4E1RA 2BUSA 1FYBA 3UGIA 1SGPI 1CT4I 2QQCA 2FNFX 1IW4A 1AN1I 2K9HA 1FAQA 1TBNA 2V1CC 3OXLA 3HH2C 1SGDI 2ARPF 4OVOA 2ELIA 1PTRA 3SEKC 3VDUA 3VDPA 1LR7A 1HJAI 1XX6A 2DB6A 1CT2I 1DS2I 2SGDI 1UVGA 2F3CI 2QQ0A 4L9MA 1SGEI 4SGBI 4HGUA 5CCMA 1M8CA 2V53A 1TBOA 1Y1CA 1SGQI 1CGII 3BJIA 1CT0I 3UEJA 5CCLA 2GKTI 1TOTA 4UXHA 1YTPA 1PTQA 1V1HA 1VDDA 1CGJI 2M5XA 2QQEA 3OXFA 1FARA 3UGLA 1BMOA 1Z7KB 1Y1BA 2ODDA 2NU2I 1LR9A 4FKDA 1W4RA 2V1CA 3OVOA 2A20A 2SGEI 1XA6A 2LUYA 1LR8A 3PDNA 1SGYI 3E59A 2J87A 2L8EA 2ENZA 5HI7A 1OMUA 5JHWC 1IY5A 1X4SA 2ORVA 1TUSA 1XBTA 5FUXA 3B4VC 1PJUA 4B6DA 5EX3A 2OD1A 1YU6C 3VE5A 1PCEA 2CJSC 1M8BA 2N1AB 2KCXA 2VRWB 2N17A 1SGRI 1HPTA 1OYVI 1UVFA 2YUUA 1NUBA 5EX0A 3OL0A 1X74A 2L7XA 1TBQR 1R0RI 2W0TA 2GVIA 1W3SA 1CE3A 1TURA 3UGDA 1MT1A 1H0ZA 2NU4I 3UFFA 1KBFA 2ENNA 1OMTA 4UXJA 3FC3A 1KBEA 5DAEA 3D00A 3GOXA 2ERWA 2KMRA 5FUYA 3UEYA 2KMOA 2JZMA 2YQPA 1TBRR 2JW6A 2WCYA 3QWPA 1UUCA 2ORWA 1HDLA 2NU3I 1TIHA 1TGSI 2JA1A 1OVOA 2E5RA 2JXDA 3QTLD 5HQ8A 2B8TA 2P6AC 1CHOI 3RU0A 3CXLA 1IY6A 2SGQI 2SGFI 4E1PA 2SGPI 3KY9A 5FUWA 1DS3I 1RFHA 1R79A 1Y8FA 1U5KA 2NU1I 2QQDA 3OXGA 4GI3C 4A24A 3SGQI 2XRCA 2KMPA 2LEOA 2N71A 2GKVA 3TJQA 2ROWA 2J9RA 2B0UC 2JYYA 2N52A 2DIPA 3SGBI 1SGNI 1N13A 2QPOA 2OVOA 4JCVE 2WVJA 1PPFI
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JW6 A;  5HQ8 A;  3QWP A;  2ODD A;  3MEK A;  3RU0 A;  5CCL A;  3PDN A;  3OXG A;  3OXL A;  4A24 A;  5EX0 A;  5CCM A;  5EX3 A;  2OD1 A;  3OXF A;  5HI7 A; 
#chains in the Genus database with same CATH topology
 2NU0 I;  2KMQ A;  1K7V A;  2PQ8 A;  4UXI A;  3MEK A;  2E73 A;  1WGT A;  1CSO I;  2UZ3 A;  3E2I A;  1KMA A;  1ULN A;  2CWH A;  1BUS A;  1V1I A;  2GKR I;  5FUV A;  4E1R A;  2BUS A;  1FYB A;  3UGI A;  1SGP I;  1CT4 I;  2QQC A;  3UOE A;  1P9Z A;  2FNF X;  1IW4 A;  1AN1 I;  2K9H A;  1FAQ A;  1TBN A;  2V1C C;  3OXL A;  3HH2 C;  1SGD I;  2ARP F;  2GIV A;  4OVO A;  2ELI A;  1PTR A;  3SEK C;  3VDU A;  3VDP A;  1LR7 A;  1HJA I;  1XX6 A;  2DB6 A;  1CT2 I;  1P9G A;  1DS2 I;  2SGD I;  5E3P A;  1UVG A;  2F3C I;  5J8C A;  2QQ0 A;  4DNC A;  1WGC A;  4L9M A;  3GOX A;  1SGE I;  3QAH A;  4SGB I;  1K7U A;  4HGU A;  1WKX A;  2WGC A;  5CCM A;  1M8C A;  2V53 A;  1TBO A;  1Y1C A;  1SGQ I;  1CGI I;  3BJI A;  2Y0M A;  1CT0 I;  3UEJ A;  5CCL A;  2GKT I;  1TOT A;  4UXH A;  1YTP A;  1PTQ A;  3TO9 A;  1V1H A;  3TO7 A;  1VDD A;  1CGJ I;  2M5X A;  1S20 A;  2QQE A;  1FAR A;  3OXF A;  1BMO A;  1Z7K B;  3UGL A;  1Y1B A;  1FY7 A;  2ODD A;  3TOA A;  2OZU A;  2NU2 I;  1LR9 A;  1ULM A;  4FKD A;  4MPI A;  1W4R A;  2V1C A;  3OVO A;  2A20 A;  2SGE I;  1XA6 A;  2LUY A;  2RIJ A;  1LR8 A;  5J8F A;  3PDN A;  2RC4 A;  1SGY I;  2X3T A;  3E59 A;  2J87 A;  1MJ9 A;  2ENZ A;  2L8E A;  5HI7 A;  3TOB A;  2UVO A;  1OMU A;  3TO6 A;  7WGA A;  5JHW C;  1IY5 A;  1X4S A;  2ORV A;  3R5B A;  1TUS A;  1XBT A;  5FUX A;  3B4V C;  1PJU A;  4B6D A;  5EX3 A;  2OD1 A;  1YU6 C;  3VE5 A;  1PCE A;  2CJS C;  4WP4 A;  1M8B A;  2N1A B;  2KCX A;  2VRW B;  3R5C A;  2N17 A;  1SGR I;  1HPT A;  1OYV I;  1UVF A;  1UHA A;  1NUB A;  2YUU A;  5EX0 A;  3OL0 A;  1X74 A;  2OU2 A;  4AML A;  2CWF A;  2L7X A;  1TBQ R;  1R0R I;  2W0T A;  2GVI A;  1K7T A;  1WTJ A;  3FSY A;  1HEV A;  1W3S A;  1CE3 A;  1TUR A;  3UGD A;  1MT1 A;  1H0Z A;  1Z2I A;  2NU4 I;  2X52 A;  3UFF A;  1KBF A;  2ENN A;  1OMT A;  3R5D A;  4UXJ A;  1ULK A;  1KBE A;  3FC3 A;  5DAE A;  3D00 A;  5E3Q A;  2ERW A;  2DKV A;  2KMR A;  3R5A A;  2KMO A;  2JZM A;  2YQP A;  5FUY A;  3UEY A;  1TBR R;  2JW6 A;  2LB7 A;  2WCY A;  3QWP A;  1UUC A;  2ORW A;  1HDL A;  2NU3 I;  3FSX A;  1TIH A;  1TGS I;  2JA1 A;  1OVO A;  2E5R A;  2JXD A;  3QTL D;  5HQ8 A;  2B8T A;  2P6A C;  1CHO I;  3RU0 A;  3CXL A;  1IY6 A;  2SGQ I;  2SGF I;  1NXU A;  4E1P A;  2SGP I;  3KY9 A;  5FUW A;  1MJA A;  1DS3 I;  1RFH A;  1R79 A;  1Y8F A;  1Q9B A;  1U5K A;  2NU1 I;  2QQD A;  3OXG A;  4GI3 C;  4A24 A;  3SGQ I;  2XRC A;  2KMP A;  2CWG A;  2LEO A;  2N71 A;  2GKV A;  3TJQ A;  1MJB A;  2ROW A;  2J9R A;  2B0U C;  2JYY A;  9WGA A;  5E3R A;  2N52 A;  2DIP A;  3SGB I;  1SGN I;  1N13 A;  2QPO A;  2OVO A;  4JCV E;  2WVJ A;  1PPF I; 
#chains in the Genus database with same CATH homology
 2NU0 I;  2KMQ A;  4UXI A;  3MEK A;  2E73 A;  2UZ3 A;  1CSO I;  1KMA A;  3E2I A;  1BUS A;  1V1I A;  2GKR I;  5FUV A;  4E1R A;  2BUS A;  1FYB A;  3UGI A;  1SGP I;  1CT4 I;  2QQC A;  2FNF X;  1IW4 A;  1AN1 I;  2K9H A;  1FAQ A;  1TBN A;  2V1C C;  3OXL A;  3HH2 C;  1SGD I;  2ARP F;  4OVO A;  2ELI A;  1PTR A;  3SEK C;  3VDU A;  3VDP A;  1LR7 A;  1HJA I;  1XX6 A;  2DB6 A;  1CT2 I;  1DS2 I;  2SGD I;  1UVG A;  2F3C I;  2QQ0 A;  4L9M A;  1SGE I;  4SGB I;  4HGU A;  5CCM A;  1M8C A;  2V53 A;  1TBO A;  1Y1C A;  1SGQ I;  1CGI I;  3BJI A;  1CT0 I;  3UEJ A;  5CCL A;  2GKT I;  1TOT A;  4UXH A;  1YTP A;  1PTQ A;  1V1H A;  1VDD A;  1CGJ I;  2M5X A;  2QQE A;  3OXF A;  1FAR A;  3UGL A;  1BMO A;  1Z7K B;  1Y1B A;  2ODD A;  2NU2 I;  1LR9 A;  4FKD A;  1W4R A;  2V1C A;  3OVO A;  2A20 A;  2SGE I;  1XA6 A;  2LUY A;  1LR8 A;  3PDN A;  1SGY I;  3E59 A;  2J87 A;  2L8E A;  2ENZ A;  5HI7 A;  1OMU A;  5JHW C;  1IY5 A;  1X4S A;  2ORV A;  1TUS A;  1XBT A;  5FUX A;  3B4V C;  1PJU A;  4B6D A;  5EX3 A;  2OD1 A;  1YU6 C;  3VE5 A;  1PCE A;  2CJS C;  1M8B A;  2N1A B;  2KCX A;  2VRW B;  2N17 A;  1SGR I;  1HPT A;  1OYV I;  1UVF A;  2YUU A;  1NUB A;  5EX0 A;  3OL0 A;  1X74 A;  2L7X A;  1TBQ R;  1R0R I;  2W0T A;  2GVI A;  1W3S A;  1CE3 A;  1TUR A;  3UGD A;  1MT1 A;  1H0Z A;  2NU4 I;  3UFF A;  1KBF A;  2ENN A;  1OMT A;  4UXJ A;  3FC3 A;  1KBE A;  5DAE A;  3D00 A;  3GOX A;  2ERW A;  2KMR A;  5FUY A;  3UEY A;  2KMO A;  2JZM A;  2YQP A;  1TBR R;  2JW6 A;  2WCY A;  3QWP A;  1UUC A;  2ORW A;  1HDL A;  2NU3 I;  1TIH A;  1TGS I;  2JA1 A;  1OVO A;  2E5R A;  2JXD A;  3QTL D;  5HQ8 A;  2B8T A;  2P6A C;  1CHO I;  3RU0 A;  3CXL A;  1IY6 A;  2SGQ I;  2SGF I;  4E1P A;  2SGP I;  3KY9 A;  5FUW A;  1DS3 I;  1RFH A;  1R79 A;  1Y8F A;  1U5K A;  2NU1 I;  2QQD A;  3OXG A;  4GI3 C;  4A24 A;  3SGQ I;  2XRC A;  2KMP A;  2LEO A;  2N71 A;  2GKV A;  3TJQ A;  2ROW A;  2J9R A;  2B0U C;  2JYY A;  2N52 A;  2DIP A;  3SGB I;  1SGN I;  1N13 A;  2QPO A;  2OVO A;  4JCV E;  2WVJ A;  1PPF I; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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