2ODDA

Solution structure of the mynd domain from aml1-eto complexed with smrt, a corepressor
Total Genus 8
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
8
sequence length
50
structure length
50
Chain Sequence
DSSESCWNCGRKASETCSGCNTARYCGSFCQHKDWEKHHHICGQTLQAQQ
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Metal binding protein
source organism Homo sapiens
publication title Structural basis for recognition of SMRT/N-CoR by the MYND domain and its contribution to AML1/ETO's activity.
pubmed doi rcsb
molecule keywords SMRT
total genus 8
structure length 50
sequence length 50
ec nomenclature
pdb deposition date 2006-12-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01753 zf-MYND MYND finger
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.180 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 2oddA00
2JW6A 5HI7A 5CCMA 3OXLA 5CCLA 3OXFA 5EX0A 2ODDA 3MEKA 3PDNA 4A24A 3OXGA 5EX3A 3RU0A 2OD1A 5HQ8A 3QWPA
chains in the Genus database with same CATH superfamily
1PTQA 2KCXA 2W0TA 1OYVI 3UGIA 2KMOA 2OVOA 3SGQI 3UGLA 1CT2I 2ROWA 2VRWB 3UFFA 2NU4I 2OD1A 2X3TA 1UVGA 1WKXA 1TGSI 1TBRR 1DS2I 2V53A 1XBTA 2ARPF 2NU2I 2CJSC 2QQ0A 1K7TA 3R5AA 2OU2A 1M8CA 1SGPI 1LR7A 2ORVA 3E2IA 1P9ZA 1OVOA 2GVIA 4JCVE 5E3QA 5E3RA 3TJQA 3KY9A 5J8FA 2N1AB 3D00A 4UXIA 1FY7A 1UVFA 2SGDI 1Y8FA 3FSXA 4B6DA 1SGEI 1TBQR 1TIHA 2NU3I 1LR9A 3GOXA 1TBNA 2V1CA 1FAQA 1CGII 3QWPA 2ENNA 2WVJA 1CHOI 2ELIA 2DIPA 2QQEA 1KMAA 3R5BA 1SGQI 3TO6A 1S20A 1TUSA 1SGYI 2JXDA 2YQPA 5FUYA 4OVOA 5EX0A 1PCEA 3TOAA 3TO7A 3E59A 5J8CA 2NU1I 4FKDA 2E73A 2X52A 4WP4A 2NU0I 1R0RI 4UXJA 5FUWA 5HI7A 2ERWA 1V1IA 2WCYA 5CCMA 2PQ8A 2ODDA 1ULNA 2RIJA 2E5RA 5FUVA 2ENZA 2KMQA 1H0ZA 1MT1A 2SGQI 2GKTI 5JHWC 1Y1BA 1N13A 3QAHA 4SGBI 1TBOA 2A20A 1V1HA 1CT0I 1UUCA 3FSYA 3PDNA 3QTLD 4L9MA 1HDLA 2JZMA 3OXFA 2WGCA 1Y1CA 4A24A 2DB6A 3TOBA 3OXLA 3UOEA 1YU6C 1KBEA 1M8BA 1X74A 1CGJI 5FUXA 2LUYA 3FC3A 1IY5A 2GKRI 2RC4A 2FNFX 3UGDA 4UXHA 1VDDA 7WGAA 1WGCA 2SGFI 2L8EA 4E1RA 3HH2C 3VE5A 5CCLA 1P9GA 1LR8A 2Y0MA 1HJAI 1NUBA 1ULMA 3R5CA 2LB7A 3MEKA 5EX3A 1Z7KB 1CSOI 2B0UC 1MJ9A 1W4RA 2JW6A 2SGEI 3SEKC 3VDPA 2JA1A 4AMLA 2CWHA 1UHAA 1YTPA 2BUSA 3BJIA 3UEYA 2F3CI 2ORWA 3OXGA 1PJUA 1PTRA 9WGAA 1OMTA 1TURA 3B4VC 2KMPA 2XRCA 3CXLA 3R5DA 5HQ8A 2YUUA 2KMRA 1WTJA 3TO9A 2J87A 3VDUA 1U5KA 1XA6A 1OMUA 2CWFA 1CT4I 1K7UA 2N52A 4HGUA 2GIVA 2UZ3A 3OVOA 2CWGA 1PPFI 2V1CC 2M5XA 1HPTA 1FYBA 1RFHA 1BUSA 3OL0A 2B8TA 2N71A 1R79A 1DS3I 2N17A 2P6AC 1AN1I 1XX6A 2L7XA 3UEJA 2GKVA 2LEOA 1TOTA 1FARA 1SGNI 2DKVA 1IY6A 1KBFA 2J9RA 2K9HA 4MPIA 2QQDA 5DAEA 1X4SA 1CE3A 1NXUA 2QQCA 5E3PA 1HEVA 1BMOA 2OZUA 1IW4A 1SGDI 1K7VA 4E1PA 1MJAA 1Q9BA 2JYYA 1MJBA 2UVOA 4GI3C 3SGBI 4DNCA 1W3SA 2SGPI 3RU0A 1WGTA 2QPOA 1SGRI 1Z2IA 1ULKA
chains in the Genus database with same CATH topology
1PTQA 2KCXA 2W0TA 1OYVI 3UGIA 2KMOA 2OVOA 3SGQI 3UGLA 1CT2I 2ROWA 2VRWB 3UFFA 2NU4I 2OD1A 1UVGA 1TGSI 1TBRR 1DS2I 2V53A 1XBTA 2ARPF 2NU2I 2CJSC 2QQ0A 3E2IA 1M8CA 1SGPI 1LR7A 2ORVA 2GVIA 1OVOA 4JCVE 3TJQA 3KY9A 2N1AB 3D00A 4UXIA 1UVFA 2SGDI 4B6DA 1Y8FA 1SGEI 1TBQR 1TIHA 2NU3I 1LR9A 3GOXA 1TBNA 2V1CA 1FAQA 1CGII 3QWPA 2ENNA 2WVJA 1CHOI 2ELIA 2DIPA 2QQEA 1KMAA 1SGQI 1TUSA 1SGYI 2JXDA 2YQPA 5FUYA 4OVOA 5EX0A 1PCEA 3E59A 2NU1I 4FKDA 2E73A 5HI7A 2NU0I 1R0RI 4UXJA 5FUWA 2ERWA 1V1IA 2WCYA 5CCMA 2ODDA 2E5RA 5FUVA 2ENZA 2KMQA 1H0ZA 1MT1A 2SGQI 2GKTI 5JHWC 1Y1BA 4SGBI 1TBOA 2A20A 1V1HA 1CT0I 1UUCA 3PDNA 4L9MA 3QTLD 1HDLA 2JZMA 3OXFA 4A24A 1Y1CA 3OXLA 1YU6C 1KBEA 1M8BA 1X74A 1CGJI 5FUXA 2LUYA 3FC3A 1IY5A 2GKRI 2FNFX 3UGDA 4UXHA 1VDDA 2SGFI 2L8EA 4E1RA 3HH2C 3VE5A 5CCLA 1LR8A 1HJAI 1NUBA 3MEKA 5EX3A 1Z7KB 1CSOI 2B0UC 1W4RA 2JW6A 2SGEI 3SEKC 3VDPA 2JA1A 3BJIA 1YTPA 2BUSA 3UEYA 2F3CI 2ORWA 3OXGA 1PJUA 1PTRA 1OMTA 1TURA 3B4VC 2KMPA 2XRCA 3CXLA 5HQ8A 2YUUA 2KMRA 2J87A 3VDUA 1U5KA 1XA6A 1OMUA 1CT4I 2N52A 4HGUA 2UZ3A 3OVOA 1PPFI 2V1CC 2M5XA 1HPTA 1FYBA 1RFHA 1BUSA 3OL0A 2B8TA 2N71A 1R79A 1DS3I 2N17A 2P6AC 1AN1I 1XX6A 2L7XA 3UEJA 2GKVA 2LEOA 1TOTA 1FARA 1SGNI 1IY6A 1KBFA 2J9RA 2K9HA 2QQDA 5DAEA 1X4SA 1CE3A 2QQCA 1BMOA 1IW4A 1SGDI 4E1PA 2JYYA 3SGBI 4GI3C 1W3SA 2SGPI 3RU0A 2DB6A 2QPOA 1SGRI 1N13A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JW6 A;  5HI7 A;  5CCM A;  3OXL A;  5CCL A;  3OXF A;  5EX0 A;  2ODD A;  3MEK A;  3PDN A;  4A24 A;  3OXG A;  5EX3 A;  3RU0 A;  2OD1 A;  5HQ8 A;  3QWP A; 
#chains in the Genus database with same CATH topology
 1PTQ A;  2KCX A;  2W0T A;  1OYV I;  3UGI A;  2KMO A;  2OVO A;  3SGQ I;  3UGL A;  1CT2 I;  2ROW A;  2VRW B;  3UFF A;  2NU4 I;  2OD1 A;  2X3T A;  1UVG A;  1WKX A;  1TGS I;  1TBR R;  1DS2 I;  2V53 A;  1XBT A;  2ARP F;  2NU2 I;  2CJS C;  2QQ0 A;  1K7T A;  3R5A A;  2OU2 A;  1M8C A;  1SGP I;  1LR7 A;  2ORV A;  3E2I A;  1P9Z A;  1OVO A;  2GVI A;  4JCV E;  5E3Q A;  5E3R A;  3TJQ A;  3KY9 A;  5J8F A;  2N1A B;  3D00 A;  4UXI A;  1FY7 A;  1UVF A;  2SGD I;  1Y8F A;  3FSX A;  4B6D A;  1SGE I;  1TBQ R;  1TIH A;  2NU3 I;  1LR9 A;  3GOX A;  1TBN A;  2V1C A;  1FAQ A;  1CGI I;  3QWP A;  2ENN A;  2WVJ A;  1CHO I;  2ELI A;  2DIP A;  2QQE A;  1KMA A;  3R5B A;  1SGQ I;  3TO6 A;  1S20 A;  1TUS A;  1SGY I;  2JXD A;  2YQP A;  5FUY A;  4OVO A;  5EX0 A;  1PCE A;  3TOA A;  3TO7 A;  3E59 A;  5J8C A;  2NU1 I;  4FKD A;  2E73 A;  2X52 A;  4WP4 A;  2NU0 I;  1R0R I;  4UXJ A;  5FUW A;  5HI7 A;  2ERW A;  1V1I A;  2WCY A;  5CCM A;  2PQ8 A;  2ODD A;  1ULN A;  2RIJ A;  2E5R A;  5FUV A;  2ENZ A;  2KMQ A;  1H0Z A;  1MT1 A;  2SGQ I;  2GKT I;  5JHW C;  1Y1B A;  1N13 A;  3QAH A;  4SGB I;  1TBO A;  2A20 A;  1V1H A;  1CT0 I;  1UUC A;  3FSY A;  3PDN A;  3QTL D;  4L9M A;  1HDL A;  2JZM A;  3OXF A;  2WGC A;  1Y1C A;  4A24 A;  2DB6 A;  3TOB A;  3OXL A;  3UOE A;  1YU6 C;  1KBE A;  1M8B A;  1X74 A;  1CGJ I;  5FUX A;  2LUY A;  3FC3 A;  1IY5 A;  2GKR I;  2RC4 A;  2FNF X;  3UGD A;  4UXH A;  1VDD A;  7WGA A;  1WGC A;  2SGF I;  2L8E A;  4E1R A;  3HH2 C;  3VE5 A;  5CCL A;  1P9G A;  1LR8 A;  2Y0M A;  1HJA I;  1NUB A;  1ULM A;  3R5C A;  2LB7 A;  3MEK A;  5EX3 A;  1Z7K B;  1CSO I;  2B0U C;  1MJ9 A;  1W4R A;  2JW6 A;  2SGE I;  3SEK C;  3VDP A;  2JA1 A;  4AML A;  2CWH A;  1UHA A;  1YTP A;  2BUS A;  3BJI A;  3UEY A;  2F3C I;  2ORW A;  3OXG A;  1PJU A;  1PTR A;  9WGA A;  1OMT A;  1TUR A;  3B4V C;  2KMP A;  2XRC A;  3CXL A;  3R5D A;  5HQ8 A;  2YUU A;  2KMR A;  1WTJ A;  3TO9 A;  2J87 A;  3VDU A;  1U5K A;  1XA6 A;  1OMU A;  2CWF A;  1CT4 I;  1K7U A;  2N52 A;  4HGU A;  2GIV A;  2UZ3 A;  3OVO A;  2CWG A;  1PPF I;  2V1C C;  2M5X A;  1HPT A;  1FYB A;  1RFH A;  1BUS A;  3OL0 A;  2B8T A;  2N71 A;  1R79 A;  1DS3 I;  2N17 A;  2P6A C;  1AN1 I;  1XX6 A;  2L7X A;  3UEJ A;  2GKV A;  2LEO A;  1TOT A;  1FAR A;  1SGN I;  2DKV A;  1IY6 A;  1KBF A;  2J9R A;  2K9H A;  4MPI A;  2QQD A;  5DAE A;  1X4S A;  1CE3 A;  1NXU A;  2QQC A;  5E3P A;  1HEV A;  1BMO A;  2OZU A;  1IW4 A;  1SGD I;  1K7V A;  4E1P A;  1MJA A;  1Q9B A;  2JYY A;  1MJB A;  2UVO A;  4GI3 C;  3SGB I;  4DNC A;  1W3S A;  2SGP I;  3RU0 A;  1WGT A;  2QPO A;  1SGR I;  1Z2I A;  1ULK A; 
#chains in the Genus database with same CATH homology
 1PTQ A;  2KCX A;  2W0T A;  1OYV I;  3UGI A;  2KMO A;  2OVO A;  3SGQ I;  3UGL A;  1CT2 I;  2ROW A;  2VRW B;  3UFF A;  2NU4 I;  2OD1 A;  1UVG A;  1TGS I;  1TBR R;  1DS2 I;  2V53 A;  1XBT A;  2ARP F;  2NU2 I;  2CJS C;  2QQ0 A;  3E2I A;  1M8C A;  1SGP I;  1LR7 A;  2ORV A;  2GVI A;  1OVO A;  4JCV E;  3TJQ A;  3KY9 A;  2N1A B;  3D00 A;  4UXI A;  1UVF A;  2SGD I;  4B6D A;  1Y8F A;  1SGE I;  1TBQ R;  1TIH A;  2NU3 I;  1LR9 A;  3GOX A;  1TBN A;  2V1C A;  1FAQ A;  1CGI I;  3QWP A;  2ENN A;  2WVJ A;  1CHO I;  2ELI A;  2DIP A;  2QQE A;  1KMA A;  1SGQ I;  1TUS A;  1SGY I;  2JXD A;  2YQP A;  5FUY A;  4OVO A;  5EX0 A;  1PCE A;  3E59 A;  2NU1 I;  4FKD A;  2E73 A;  5HI7 A;  2NU0 I;  1R0R I;  4UXJ A;  5FUW A;  2ERW A;  1V1I A;  2WCY A;  5CCM A;  2ODD A;  2E5R A;  5FUV A;  2ENZ A;  2KMQ A;  1H0Z A;  1MT1 A;  2SGQ I;  2GKT I;  5JHW C;  1Y1B A;  4SGB I;  1TBO A;  2A20 A;  1V1H A;  1CT0 I;  1UUC A;  3PDN A;  4L9M A;  3QTL D;  1HDL A;  2JZM A;  3OXF A;  4A24 A;  1Y1C A;  3OXL A;  1YU6 C;  1KBE A;  1M8B A;  1X74 A;  1CGJ I;  5FUX A;  2LUY A;  3FC3 A;  1IY5 A;  2GKR I;  2FNF X;  3UGD A;  4UXH A;  1VDD A;  2SGF I;  2L8E A;  4E1R A;  3HH2 C;  3VE5 A;  5CCL A;  1LR8 A;  1HJA I;  1NUB A;  3MEK A;  5EX3 A;  1Z7K B;  1CSO I;  2B0U C;  1W4R A;  2JW6 A;  2SGE I;  3SEK C;  3VDP A;  2JA1 A;  3BJI A;  1YTP A;  2BUS A;  3UEY A;  2F3C I;  2ORW A;  3OXG A;  1PJU A;  1PTR A;  1OMT A;  1TUR A;  3B4V C;  2KMP A;  2XRC A;  3CXL A;  5HQ8 A;  2YUU A;  2KMR A;  2J87 A;  3VDU A;  1U5K A;  1XA6 A;  1OMU A;  1CT4 I;  2N52 A;  4HGU A;  2UZ3 A;  3OVO A;  1PPF I;  2V1C C;  2M5X A;  1HPT A;  1FYB A;  1RFH A;  1BUS A;  3OL0 A;  2B8T A;  2N71 A;  1R79 A;  1DS3 I;  2N17 A;  2P6A C;  1AN1 I;  1XX6 A;  2L7X A;  3UEJ A;  2GKV A;  2LEO A;  1TOT A;  1FAR A;  1SGN I;  1IY6 A;  1KBF A;  2J9R A;  2K9H A;  2QQD A;  5DAE A;  1X4S A;  1CE3 A;  2QQC A;  1BMO A;  1IW4 A;  1SGD I;  4E1P A;  2JYY A;  3SGB I;  4GI3 C;  1W3S A;  2SGP I;  3RU0 A;  2DB6 A;  2QPO A;  1SGR I;  1N13 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...