2SGDI

Asp 18 variant of turkey ovomucoid inhibitor third domain complexed with streptomyces griseus proteinase b at ph 10.7
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
51
structure length
51
Chain Sequence
b'VDCSEYPKPACTDEYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Streptogrisin B
publication title Recruitment of a Buried K+ Ion to Stabilize the Negative Charge of Ionized P1 in the Hydrophobic Pocket: Crystal Structures of Glu18, Gln18, Asp18 and Asn18 Variants of Turkey Ovomucoid Inhibitor Third Domain Complexed with Streptomyces griseus Protease B at Various pHs
rcsb
source organism Meleagris gallopavo
molecule tags Hydrolase/hydrolase inhibitor
total genus 13
structure length 51
sequence length 51
ec nomenclature
pdb deposition date 1999-03-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
I PF00050 Kazal_1 Kazal-type serine protease inhibitor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.30 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 2sgdI00
2KMQA 1HDLA 1CSOI 3SGQI 2LEOA 1OMUA 1CT2I 1BMOA 1SGRI 2GKVA 1CE3A 2KMPA 1IW4A 1PJUA 1DS3I 4HGUA 1R0RI 2WCYA 1TIHA 1UVGA 1CHOI 1CT4I 1OYVI 2JZMA 4GI3C 1Y1CA 1Y1BA 1MT1A 1SGDI 1SGPI 2N52A 3SEKC 4SGBI 2V53A 1HPTA 2N71A 2F3CI 2SGEI 2QQDA 2BUSA 2JXDA 1BUSA 2NU2I 1OVOA 1TBQR 1CT0I 1PPFI 1YU6C 3SGBI 2KMRA 1PCEA 2OVOA 1IY5A 2M5XA 1TGSI 1YTPA 2JYYA 1SGYI 2ERWA 1HJAI 2NU4I 2SGQI 2ARPF 2P6AC 1TURA 3QTLD 1AN1I 2GKTI 1H0ZA 3HH2C 4OVOA 1OMTA 3TJQA 2N17A 1LR8A 2KCXA 1N13A 2SGFI 2GKRI 1DS2I 1M8CA 2SGDI 1TUSA 1FYBA 1IY6A 1UUCA 2NU0I 1CGJI 2NU3I 5JHWC 1CGII 3B4VC 1SGEI 1SGNI 1UVFA 2NU1I 1TBRR 2B0UC 1KMAA 5DAEA 1LR7A 2QQCA 2KMOA 1NUBA 1SGQI 1Z7KB 2SGPI 1M8BA 2XRCA 3OVOA 1LR9A
chains in the Genus database with same CATH superfamily
2KMQA 3D00A 1HDLA 1CSOI 3SGQI 1PTRA 2L8EA 2LEOA 5FUYA 1FY7A 1OMUA 1CT2I 1ULNA 5EX3A 1BMOA 1SGRI 2GKVA 2QPOA 2KMPA 3R5AA 3UOEA 1CE3A 4UXJA 2DB6A 1IW4A 1PJUA 2VRWB 5FUWA 3RU0A 1DS3I 2ORWA 2OD1A 1Z2IA 1PTQA 4HGUA 1R0RI 2B8TA 2WCYA 2W0TA 5E3PA 3UFFA 1MJ9A 1Y8FA 2K9HA 1Q9BA 3R5DA 2ELIA 3TO9A 2YUUA 1TIHA 3FC3A 2Y0MA 1UVGA 1CHOI 1CT4I 1OYVI 1K7UA 2JZMA 4GI3C 1Y1CA 1WGCA 3E59A 2UVOA 1Y1BA 1MT1A 1SGDI 1SGPI 2N52A 3SEKC 4SGBI 2V53A 3UEJA 2PQ8A 2J87A 1FAQA 1HEVA 1HPTA 1U5KA 2N71A 3OXLA 2F3CI 2X3TA 3UGLA 1ULMA 2JW6A 2ENNA 2N1AB 2SGEI 2QQDA 2BUSA 2OU2A 2FNFX 2JXDA 3PDNA 2NU2I 1BUSA 3FSXA 2GIVA 1OVOA 1V1IA 2ODDA 5HQ8A 5CCMA 1P9GA 2L7XA 1K7TA 1V1HA 3OXFA 4E1RA 1TBQR 1CT0I 3KY9A 1X4SA 2DKVA 1PPFI 1YU6C 3SGBI 2KMRA 1PCEA 3VDPA 1RFHA 2OVOA 2QQEA 1UHAA 1IY5A 3CXLA 2M5XA 1TGSI 1YTPA 2UZ3A 2JYYA 1SGYI 2WVJA 2CJSC 2ERWA 1HJAI 2NU4I 2SGQI 3UEYA 1W4RA 2ARPF 2P6AC 5CCLA 3UGDA 1KBEA 1TURA 1TBNA 4E1PA 2RC4A 2LUYA 3FSYA 3OXGA 5HI7A 9WGAA 1P9ZA 2JA1A 2RIJA 3QTLD 2E5RA 1AN1I 5FUVA 2GKTI 1H0ZA 2OZUA 1R79A 1WTJA 3HH2C 4OVOA 1OMTA 3TJQA 2N17A 1WGTA 2V1CC 2ORVA 3UGIA 4DNCA 1LR8A 2KCXA 1WKXA 3QWPA 1N13A 2LB7A 7WGAA 2SGFI 3TOBA 1TBOA 2ROWA 2GKRI 3R5CA 1VDDA 1DS2I 2CWFA 2DIPA 1M8CA 2YQPA 5E3RA 3BJIA 2SGDI 1TUSA 5J8FA 1FYBA 4WP4A 4MPIA 1S20A 1IY6A 1UUCA 1XX6A 2NU0I 3TOAA 3VDUA 1XA6A 3R5BA 3QAHA 1MJBA 1CGJI 2J9RA 2NU3I 1CGII 4UXIA 5JHWC 3B4VC 2CWGA 4FKDA 4B6DA 3TO6A 1SGEI 1TOTA 1NXUA 1SGNI 1UVFA 2NU1I 2GVIA 3GOXA 1MJAA 1TBRR 1XBTA 4UXHA 2B0UC 5FUXA 2WGCA 1KMAA 1KBFA 3OL0A 3TO7A 2X52A 1K7VA 5DAEA 1FARA 2CWHA 1LR7A 2E73A 2QQ0A 2V1CA 4L9MA 5J8CA 3E2IA 2QQCA 2A20A 2ENZA 3MEKA 5EX0A 4AMLA 1X74A 4JCVE 1ULKA 2KMOA 1NUBA 1SGQI 1Z7KB 4A24A 2SGPI 3VE5A 1M8BA 2XRCA 5E3QA 3OVOA 1W3SA 1LR9A
chains in the Genus database with same CATH topology
2KMQA 3D00A 1HDLA 1CSOI 3SGQI 1PTRA 2L8EA 2LEOA 5FUYA 1OMUA 1CT2I 5EX3A 1BMOA 1SGRI 2GKVA 2QPOA 2KMPA 1CE3A 4UXJA 2DB6A 1IW4A 1PJUA 2VRWB 5FUWA 3RU0A 1DS3I 2ORWA 2OD1A 1PTQA 4HGUA 1R0RI 2B8TA 2WCYA 2W0TA 3UFFA 1Y8FA 2K9HA 2ELIA 2YUUA 1TIHA 3FC3A 1UVGA 1CHOI 1CT4I 1OYVI 2JZMA 4GI3C 1Y1CA 3E59A 1Y1BA 1MT1A 1SGDI 1SGPI 2N52A 3SEKC 4SGBI 2V53A 3UEJA 2J87A 1FAQA 1HPTA 1U5KA 2N71A 3OXLA 2F3CI 3UGLA 2JW6A 2ENNA 2N1AB 2SGEI 2QQDA 2BUSA 2FNFX 2JXDA 3PDNA 2NU2I 1BUSA 1OVOA 1V1IA 2ODDA 5HQ8A 5CCMA 2L7XA 1V1HA 3OXFA 4E1RA 1TBQR 1CT0I 3KY9A 1X4SA 1PPFI 1YU6C 3SGBI 2KMRA 1PCEA 3VDPA 1RFHA 2OVOA 2QQEA 1IY5A 3CXLA 2M5XA 1TGSI 1YTPA 2UZ3A 2JYYA 1SGYI 2WVJA 2CJSC 2ERWA 1HJAI 2NU4I 2SGQI 3UEYA 1W4RA 2ARPF 2P6AC 5CCLA 3UGDA 1KBEA 1TURA 1TBNA 4E1PA 2LUYA 5HI7A 3OXGA 2JA1A 3QTLD 2E5RA 1AN1I 5FUVA 2GKTI 1H0ZA 1R79A 3HH2C 4OVOA 1OMTA 3TJQA 2N17A 2V1CC 3UGIA 2ORVA 1LR8A 2KCXA 3QWPA 1N13A 2SGFI 1TBOA 2ROWA 2GKRI 1VDDA 1DS2I 2DIPA 1M8CA 2YQPA 3BJIA 2SGDI 1TUSA 1FYBA 1IY6A 1UUCA 1XX6A 2NU0I 3VDUA 1XA6A 1CGJI 2J9RA 2NU3I 1CGII 4UXIA 5JHWC 3B4VC 4FKDA 4B6DA 1SGEI 1TOTA 1SGNI 1UVFA 2NU1I 2GVIA 3GOXA 1TBRR 1XBTA 4UXHA 2B0UC 5FUXA 1KMAA 1KBFA 3OL0A 5DAEA 1FARA 1LR7A 2E73A 2QQ0A 2V1CA 4L9MA 3E2IA 2QQCA 2A20A 2ENZA 3MEKA 5EX0A 1X74A 4JCVE 2KMOA 1NUBA 1SGQI 1Z7KB 4A24A 2SGPI 3VE5A 1M8BA 2XRCA 3OVOA 1W3SA 1LR9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2KMQ A;  1HDL A;  1CSO I;  3SGQ I;  2LEO A;  1OMU A;  1CT2 I;  1BMO A;  1SGR I;  2GKV A;  1CE3 A;  2KMP A;  1IW4 A;  1PJU A;  1DS3 I;  4HGU A;  1R0R I;  2WCY A;  1TIH A;  1UVG A;  1CHO I;  1CT4 I;  1OYV I;  2JZM A;  4GI3 C;  1Y1C A;  1Y1B A;  1MT1 A;  1SGD I;  1SGP I;  2N52 A;  3SEK C;  4SGB I;  2V53 A;  1HPT A;  2N71 A;  2F3C I;  2SGE I;  2QQD A;  2BUS A;  2JXD A;  1BUS A;  2NU2 I;  1OVO A;  1TBQ R;  1CT0 I;  1PPF I;  1YU6 C;  3SGB I;  2KMR A;  1PCE A;  2OVO A;  1IY5 A;  2M5X A;  1TGS I;  1YTP A;  2JYY A;  1SGY I;  2ERW A;  1HJA I;  2NU4 I;  2SGQ I;  2ARP F;  2P6A C;  1TUR A;  3QTL D;  1AN1 I;  2GKT I;  1H0Z A;  3HH2 C;  4OVO A;  1OMT A;  3TJQ A;  2N17 A;  1LR8 A;  2KCX A;  1N13 A;  2SGF I;  2GKR I;  1DS2 I;  1M8C A;  2SGD I;  1TUS A;  1FYB A;  1IY6 A;  1UUC A;  2NU0 I;  1CGJ I;  2NU3 I;  5JHW C;  1CGI I;  3B4V C;  1SGE I;  1SGN I;  1UVF A;  2NU1 I;  1TBR R;  2B0U C;  1KMA A;  5DAE A;  1LR7 A;  2QQC A;  2KMO A;  1NUB A;  1SGQ I;  1Z7K B;  2SGP I;  1M8B A;  2XRC A;  3OVO A;  1LR9 A; 
#chains in the Genus database with same CATH topology
 2KMQ A;  3D00 A;  1HDL A;  1CSO I;  3SGQ I;  1PTR A;  2L8E A;  2LEO A;  5FUY A;  1FY7 A;  1OMU A;  1CT2 I;  1ULN A;  5EX3 A;  1BMO A;  1SGR I;  2GKV A;  2QPO A;  2KMP A;  3R5A A;  3UOE A;  1CE3 A;  4UXJ A;  2DB6 A;  1IW4 A;  1PJU A;  2VRW B;  5FUW A;  3RU0 A;  1DS3 I;  2ORW A;  2OD1 A;  1Z2I A;  1PTQ A;  4HGU A;  1R0R I;  2B8T A;  2WCY A;  2W0T A;  5E3P A;  3UFF A;  1MJ9 A;  1Y8F A;  2K9H A;  1Q9B A;  3R5D A;  2ELI A;  3TO9 A;  2YUU A;  1TIH A;  3FC3 A;  2Y0M A;  1UVG A;  1CHO I;  1CT4 I;  1OYV I;  1K7U A;  2JZM A;  4GI3 C;  1Y1C A;  1WGC A;  3E59 A;  2UVO A;  1Y1B A;  1MT1 A;  1SGD I;  1SGP I;  2N52 A;  3SEK C;  4SGB I;  2V53 A;  3UEJ A;  2PQ8 A;  2J87 A;  1FAQ A;  1HEV A;  1HPT A;  1U5K A;  2N71 A;  3OXL A;  2F3C I;  2X3T A;  3UGL A;  1ULM A;  2JW6 A;  2ENN A;  2N1A B;  2SGE I;  2QQD A;  2BUS A;  2OU2 A;  2FNF X;  2JXD A;  3PDN A;  2NU2 I;  1BUS A;  3FSX A;  2GIV A;  1OVO A;  1V1I A;  2ODD A;  5HQ8 A;  5CCM A;  1P9G A;  2L7X A;  1K7T A;  1V1H A;  3OXF A;  4E1R A;  1TBQ R;  1CT0 I;  3KY9 A;  1X4S A;  2DKV A;  1PPF I;  1YU6 C;  3SGB I;  2KMR A;  1PCE A;  3VDP A;  1RFH A;  2OVO A;  2QQE A;  1UHA A;  1IY5 A;  3CXL A;  2M5X A;  1TGS I;  1YTP A;  2UZ3 A;  2JYY A;  1SGY I;  2WVJ A;  2CJS C;  2ERW A;  1HJA I;  2NU4 I;  2SGQ I;  3UEY A;  1W4R A;  2ARP F;  2P6A C;  5CCL A;  3UGD A;  1KBE A;  1TUR A;  1TBN A;  4E1P A;  2RC4 A;  2LUY A;  3FSY A;  3OXG A;  5HI7 A;  9WGA A;  1P9Z A;  2JA1 A;  2RIJ A;  3QTL D;  2E5R A;  1AN1 I;  5FUV A;  2GKT I;  1H0Z A;  2OZU A;  1R79 A;  1WTJ A;  3HH2 C;  4OVO A;  1OMT A;  3TJQ A;  2N17 A;  1WGT A;  2V1C C;  2ORV A;  3UGI A;  4DNC A;  1LR8 A;  2KCX A;  1WKX A;  3QWP A;  1N13 A;  2LB7 A;  7WGA A;  2SGF I;  3TOB A;  1TBO A;  2ROW A;  2GKR I;  3R5C A;  1VDD A;  1DS2 I;  2CWF A;  2DIP A;  1M8C A;  2YQP A;  5E3R A;  3BJI A;  2SGD I;  1TUS A;  5J8F A;  1FYB A;  4WP4 A;  4MPI A;  1S20 A;  1IY6 A;  1UUC A;  1XX6 A;  2NU0 I;  3TOA A;  3VDU A;  1XA6 A;  3R5B A;  3QAH A;  1MJB A;  1CGJ I;  2J9R A;  2NU3 I;  1CGI I;  4UXI A;  5JHW C;  3B4V C;  2CWG A;  4FKD A;  4B6D A;  3TO6 A;  1SGE I;  1TOT A;  1NXU A;  1SGN I;  1UVF A;  2NU1 I;  2GVI A;  3GOX A;  1MJA A;  1TBR R;  1XBT A;  4UXH A;  2B0U C;  5FUX A;  2WGC A;  1KMA A;  1KBF A;  3OL0 A;  3TO7 A;  2X52 A;  1K7V A;  5DAE A;  1FAR A;  2CWH A;  1LR7 A;  2E73 A;  2QQ0 A;  2V1C A;  4L9M A;  5J8C A;  3E2I A;  2QQC A;  2A20 A;  2ENZ A;  3MEK A;  5EX0 A;  4AML A;  1X74 A;  4JCV E;  1ULK A;  2KMO A;  1NUB A;  1SGQ I;  1Z7K B;  4A24 A;  2SGP I;  3VE5 A;  1M8B A;  2XRC A;  5E3Q A;  3OVO A;  1W3S A;  1LR9 A; 
#chains in the Genus database with same CATH homology
 2KMQ A;  3D00 A;  1HDL A;  1CSO I;  3SGQ I;  1PTR A;  2L8E A;  2LEO A;  5FUY A;  1OMU A;  1CT2 I;  5EX3 A;  1BMO A;  1SGR I;  2GKV A;  2QPO A;  2KMP A;  1CE3 A;  4UXJ A;  2DB6 A;  1IW4 A;  1PJU A;  2VRW B;  5FUW A;  3RU0 A;  1DS3 I;  2ORW A;  2OD1 A;  1PTQ A;  4HGU A;  1R0R I;  2B8T A;  2WCY A;  2W0T A;  3UFF A;  1Y8F A;  2K9H A;  2ELI A;  2YUU A;  1TIH A;  3FC3 A;  1UVG A;  1CHO I;  1CT4 I;  1OYV I;  2JZM A;  4GI3 C;  1Y1C A;  3E59 A;  1Y1B A;  1MT1 A;  1SGD I;  1SGP I;  2N52 A;  3SEK C;  4SGB I;  2V53 A;  3UEJ A;  2J87 A;  1FAQ A;  1HPT A;  1U5K A;  2N71 A;  3OXL A;  2F3C I;  3UGL A;  2JW6 A;  2ENN A;  2N1A B;  2SGE I;  2QQD A;  2BUS A;  2FNF X;  2JXD A;  3PDN A;  2NU2 I;  1BUS A;  1OVO A;  1V1I A;  2ODD A;  5HQ8 A;  5CCM A;  2L7X A;  1V1H A;  3OXF A;  4E1R A;  1TBQ R;  1CT0 I;  3KY9 A;  1X4S A;  1PPF I;  1YU6 C;  3SGB I;  2KMR A;  1PCE A;  3VDP A;  1RFH A;  2OVO A;  2QQE A;  1IY5 A;  3CXL A;  2M5X A;  1TGS I;  1YTP A;  2UZ3 A;  2JYY A;  1SGY I;  2WVJ A;  2CJS C;  2ERW A;  1HJA I;  2NU4 I;  2SGQ I;  3UEY A;  1W4R A;  2ARP F;  2P6A C;  5CCL A;  3UGD A;  1KBE A;  1TUR A;  1TBN A;  4E1P A;  2LUY A;  5HI7 A;  3OXG A;  2JA1 A;  3QTL D;  2E5R A;  1AN1 I;  5FUV A;  2GKT I;  1H0Z A;  1R79 A;  3HH2 C;  4OVO A;  1OMT A;  3TJQ A;  2N17 A;  2V1C C;  3UGI A;  2ORV A;  1LR8 A;  2KCX A;  3QWP A;  1N13 A;  2SGF I;  1TBO A;  2ROW A;  2GKR I;  1VDD A;  1DS2 I;  2DIP A;  1M8C A;  2YQP A;  3BJI A;  2SGD I;  1TUS A;  1FYB A;  1IY6 A;  1UUC A;  1XX6 A;  2NU0 I;  3VDU A;  1XA6 A;  1CGJ I;  2J9R A;  2NU3 I;  1CGI I;  4UXI A;  5JHW C;  3B4V C;  4FKD A;  4B6D A;  1SGE I;  1TOT A;  1SGN I;  1UVF A;  2NU1 I;  2GVI A;  3GOX A;  1TBR R;  1XBT A;  4UXH A;  2B0U C;  5FUX A;  1KMA A;  1KBF A;  3OL0 A;  5DAE A;  1FAR A;  1LR7 A;  2E73 A;  2QQ0 A;  2V1C A;  4L9M A;  3E2I A;  2QQC A;  2A20 A;  2ENZ A;  3MEK A;  5EX0 A;  1X74 A;  4JCV E;  2KMO A;  1NUB A;  1SGQ I;  1Z7K B;  4A24 A;  2SGP I;  3VE5 A;  1M8B A;  2XRC A;  3OVO A;  1W3S A;  1LR9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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