2SGDI

Asp 18 variant of turkey ovomucoid inhibitor third domain complexed with streptomyces griseus proteinase b at ph 10.7
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
51
structure length
51
Chain Sequence
VDCSEYPKPACTDEYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Streptogrisin B
publication title Recruitment of a Buried K+ Ion to Stabilize the Negative Charge of Ionized P1 in the Hydrophobic Pocket: Crystal Structures of Glu18, Gln18, Asp18 and Asn18 Variants of Turkey Ovomucoid Inhibitor Third Domain Complexed with Streptomyces griseus Protease B at Various pHs
rcsb
source organism Meleagris gallopavo
molecule tags Hydrolase/hydrolase inhibitor
total genus 13
structure length 51
sequence length 51
ec nomenclature
pdb deposition date 1999-03-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
I PF00050 Kazal_1 Kazal-type serine protease inhibitor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.30 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 2sgdI00
2BUSA 1LR7A 2OVOA 2LEOA 1UVFA 2KMOA 2V53A 1MT1A 1SGRI 2KMQA 1CGII 1YTPA 2N17A 1CHOI 1TBQR 1HDLA 1M8BA 1CT0I 1SGEI 2KMRA 2NU2I 2NU3I 3OVOA 1IY5A 1UUCA 2ARPF 2NU0I 2KCXA 4OVOA 1CT2I 1M8CA 2F3CI 1UVGA 1PPFI 1SGNI 1R0RI 1HPTA 1DS2I 1SGPI 3B4VC 5JHWC 1IW4A 3HH2C 2SGQI 2GKVA 1LR9A 1OMUA 1TGSI 2JZMA 4HGUA 2NU1I 2GKTI 1CGJI 1TUSA 1OYVI 1LR8A 1N13A 1DS3I 1SGQI 2JYYA 1TBRR 2QQDA 2JXDA 1Y1CA 1Z7KB 1CSOI 2N71A 1CT4I 2WCYA 1Y1BA 1AN1I 3SGBI 1KMAA 1IY6A 1CE3A 1BUSA 1SGDI 2SGFI 2QQCA 1TIHA 2XRCA 1PJUA 4GI3C 4SGBI 2NU4I 2SGDI 1H0ZA 3SGQI 2N52A 2SGPI 2KMPA 1SGYI 2B0UC 1OVOA 1BMOA 1NUBA 1FYBA 1OMTA 1HJAI 3TJQA 2M5XA 1TURA 1YU6C 2ERWA 2SGEI 2GKRI 2P6AC 3SEKC 3QTLD 1PCEA 5DAEA
chains in the Genus database with same CATH superfamily
2BUSA 1LR7A 2L7XA 2V1CC 2V1CA 1TBNA 2FNFX 9WGAA 2OVOA 1KBEA 1UVFA 2LEOA 5DAEA 2KMOA 1WGTA 2V53A 3TO9A 2RIJA 3FSXA 2VRWB 1MT1A 1SGRI 1W4RA 2KMQA 4JCVE 4MPIA 1CGII 1YTPA 2N17A 1CHOI 1TBQR 2DB6A 1HDLA 1M8BA 1CT0I 2JW6A 1SGEI 2KMRA 4A24A 2NU2I 2NU3I 3OVOA 1MJ9A 1IY5A 1UUCA 2JA1A 1Z2IA 3OXGA 3RU0A 2ARPF 2B8TA 2NU0I 2WGCA 1P9GA 2W0TA 1FARA 1X4SA 3E2IA 2LB7A 2KCXA 4UXIA 2LUYA 4OVOA 1CT2I 1Q9BA 1ULKA 2CWHA 1UHAA 1M8CA 3R5AA 2F3CI 1UVGA 1PPFI 1K7TA 2DIPA 2GVIA 5FUVA 1XX6A 5FUYA 5CCLA 1SGNI 1R0RI 1WTJA 2CJSC 2E73A 2QQEA 5HI7A 5E3PA 1HPTA 1DS2I 1SGPI 3B4VC 2GIVA 3OXLA 2A20A 5JHWC 1IW4A 3HH2C 5J8CA 2SGQI 4E1RA 2CWGA 2GKVA 2ORWA 3MEKA 3UOEA 1LR9A 1OMUA 1TGSI 1W3SA 3OL0A 3UEYA 2JZMA 4WP4A 3VDPA 4HGUA 1R79A 2UVOA 2NU1I 2GKTI 2X3TA 5HQ8A 2J87A 1CGJI 1TUSA 2Y0MA 1FAQA 3CXLA 1OYVI 2K9HA 3PDNA 3UFFA 1PTQA 7WGAA 2X52A 2CWFA 1LR8A 1N13A 1FY7A 3UGDA 2OZUA 2ORVA 1TBOA 1DS3I 1SGQI 2JYYA 1TBRR 2QQDA 2E5RA 5FUXA 2JXDA 3UGIA 4AMLA 1P9ZA 4UXJA 4E1PA 5EX0A 1Y1CA 1Z7KB 5EX3A 3E59A 2YQPA 1CSOI 2N71A 1CT4I 2WCYA 1Y1BA 1AN1I 3SGBI 1KMAA 1IY6A 1MJBA 2RC4A 3R5BA 1CE3A 3TOAA 1SGDI 1BUSA 2QPOA 4DNCA 3D00A 3R5DA 5FUWA 2ROWA 3TO6A 2SGFI 3OXFA 5CCMA 2QQCA 1TIHA 1XBTA 1PJUA 1Y8FA 2XRCA 3QWPA 4GI3C 4SGBI 2NU4I 2SGDI 3BJIA 1WGCA 1H0ZA 3GOXA 1VDDA 2QQ0A 3UGLA 3SGQI 3QAHA 2N52A 2SGPI 4B6DA 2KMPA 1SGYI 2B0UC 2YUUA 5E3QA 1MJAA 1V1IA 1WKXA 4L9MA 5E3RA 1OVOA 1RFHA 1V1HA 1NXUA 2ENZA 2PQ8A 2L8EA 1BMOA 4FKDA 1NUBA 1PTRA 1TOTA 1K7UA 1FYBA 1XA6A 3KY9A 3R5CA 3VE5A 4UXHA 2N1AB 1OMTA 3TO7A 1HJAI 3TJQA 2M5XA 1X74A 2OU2A 2ODDA 2J9RA 1TURA 1ULMA 2OD1A 1K7VA 1YU6C 3TOBA 3VDUA 2ELIA 2DKVA 1U5KA 1ULNA 2ERWA 1HEVA 2WVJA 1KBFA 2SGEI 2GKRI 2P6AC 5J8FA 1S20A 3UEJA 3FC3A 3SEKC 3QTLD 1PCEA 3FSYA 2UZ3A 2ENNA
chains in the Genus database with same CATH topology
2BUSA 1LR7A 2L7XA 2V1CC 2V1CA 1TBNA 2FNFX 2OVOA 1KBEA 1UVFA 2LEOA 2KMOA 2V53A 2VRWB 1MT1A 1SGRI 1W4RA 2KMQA 4JCVE 1FAQA 1CGII 1YTPA 2N17A 1CHOI 1TBQR 2DB6A 1HDLA 1M8BA 1CT0I 2JW6A 1SGEI 2KMRA 4A24A 2NU2I 2NU3I 3OVOA 1IY5A 1UUCA 2JA1A 3OXGA 3RU0A 2ARPF 2B8TA 2NU0I 2W0TA 1FARA 1X4SA 3E2IA 2KCXA 4UXIA 2LUYA 4OVOA 1CT2I 1M8CA 2F3CI 1UVGA 1PPFI 2DIPA 2GVIA 5FUVA 1XX6A 5FUYA 5CCLA 1SGNI 1R0RI 2CJSC 2E73A 2QQEA 5HI7A 1HPTA 1DS2I 1SGPI 3B4VC 3OXLA 2A20A 5JHWC 1IW4A 3HH2C 2SGQI 4E1RA 2ORWA 2GKVA 3MEKA 1LR9A 1OMUA 1TGSI 1W3SA 3OL0A 3UEYA 2JZMA 3VDPA 4HGUA 1R79A 2NU1I 2GKTI 5HQ8A 2J87A 1CGJI 1TUSA 3CXLA 1OYVI 2K9HA 3PDNA 3UFFA 1PTQA 1LR8A 1N13A 3UGDA 2ORVA 1TBOA 1DS3I 1SGQI 2JYYA 1TBRR 2QQDA 2E5RA 5FUXA 2JXDA 3UGIA 4UXJA 4E1PA 5EX0A 1Y1CA 1Z7KB 5EX3A 3E59A 2YQPA 1CSOI 2N71A 1CT4I 2WCYA 1Y1BA 1AN1I 3SGBI 1KMAA 1IY6A 1CE3A 1BUSA 1SGDI 2QPOA 3D00A 5FUWA 5CCMA 2ROWA 2SGFI 3OXFA 2QQCA 1TIHA 1XBTA 1PJUA 1Y8FA 2XRCA 3QWPA 4GI3C 4SGBI 2NU4I 2SGDI 3BJIA 1H0ZA 3GOXA 1VDDA 2QQ0A 3UGLA 3SGQI 2N52A 2SGPI 4B6DA 2KMPA 1SGYI 2B0UC 2YUUA 1V1IA 4L9MA 1OVOA 1RFHA 1V1HA 2ENZA 2L8EA 1BMOA 4FKDA 1NUBA 1PTRA 1TOTA 1FYBA 1XA6A 3KY9A 3VE5A 4UXHA 2N1AB 1OMTA 1HJAI 3TJQA 2M5XA 1X74A 2ODDA 2J9RA 1TURA 2OD1A 1YU6C 3VDUA 2ELIA 1U5KA 2ERWA 2WVJA 1KBFA 2SGEI 2GKRI 2P6AC 3UEJA 3FC3A 3SEKC 3QTLD 1PCEA 5DAEA 2UZ3A 2ENNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BUS A;  1LR7 A;  2OVO A;  2LEO A;  1UVF A;  2KMO A;  2V53 A;  1MT1 A;  1SGR I;  2KMQ A;  1CGI I;  1YTP A;  2N17 A;  1CHO I;  1TBQ R;  1HDL A;  1M8B A;  1CT0 I;  1SGE I;  2KMR A;  2NU2 I;  2NU3 I;  3OVO A;  1IY5 A;  1UUC A;  2ARP F;  2NU0 I;  2KCX A;  4OVO A;  1CT2 I;  1M8C A;  2F3C I;  1UVG A;  1PPF I;  1SGN I;  1R0R I;  1HPT A;  1DS2 I;  1SGP I;  3B4V C;  5JHW C;  1IW4 A;  3HH2 C;  2SGQ I;  2GKV A;  1LR9 A;  1OMU A;  1TGS I;  2JZM A;  4HGU A;  2NU1 I;  2GKT I;  1CGJ I;  1TUS A;  1OYV I;  1LR8 A;  1N13 A;  1DS3 I;  1SGQ I;  2JYY A;  1TBR R;  2QQD A;  2JXD A;  1Y1C A;  1Z7K B;  1CSO I;  2N71 A;  1CT4 I;  2WCY A;  1Y1B A;  1AN1 I;  3SGB I;  1KMA A;  1IY6 A;  1CE3 A;  1BUS A;  1SGD I;  2SGF I;  2QQC A;  1TIH A;  2XRC A;  1PJU A;  4GI3 C;  4SGB I;  2NU4 I;  2SGD I;  1H0Z A;  3SGQ I;  2N52 A;  2SGP I;  2KMP A;  1SGY I;  2B0U C;  1OVO A;  1BMO A;  1NUB A;  1FYB A;  1OMT A;  1HJA I;  3TJQ A;  2M5X A;  1TUR A;  1YU6 C;  2ERW A;  2SGE I;  2GKR I;  2P6A C;  3SEK C;  3QTL D;  1PCE A;  5DAE A; 
#chains in the Genus database with same CATH topology
 2BUS A;  1LR7 A;  2L7X A;  2V1C C;  2V1C A;  1TBN A;  2FNF X;  9WGA A;  2OVO A;  1KBE A;  1UVF A;  2LEO A;  5DAE A;  2KMO A;  1WGT A;  2V53 A;  3TO9 A;  2RIJ A;  3FSX A;  2VRW B;  1MT1 A;  1SGR I;  1W4R A;  2KMQ A;  4JCV E;  4MPI A;  1CGI I;  1YTP A;  2N17 A;  1CHO I;  1TBQ R;  2DB6 A;  1HDL A;  1M8B A;  1CT0 I;  2JW6 A;  1SGE I;  2KMR A;  4A24 A;  2NU2 I;  2NU3 I;  3OVO A;  1MJ9 A;  1IY5 A;  1UUC A;  2JA1 A;  1Z2I A;  3OXG A;  3RU0 A;  2ARP F;  2B8T A;  2NU0 I;  2WGC A;  1P9G A;  2W0T A;  1FAR A;  1X4S A;  3E2I A;  2LB7 A;  2KCX A;  4UXI A;  2LUY A;  4OVO A;  1CT2 I;  1Q9B A;  1ULK A;  2CWH A;  1UHA A;  1M8C A;  3R5A A;  2F3C I;  1UVG A;  1PPF I;  1K7T A;  2DIP A;  2GVI A;  5FUV A;  1XX6 A;  5FUY A;  5CCL A;  1SGN I;  1R0R I;  1WTJ A;  2CJS C;  2E73 A;  2QQE A;  5HI7 A;  5E3P A;  1HPT A;  1DS2 I;  1SGP I;  3B4V C;  2GIV A;  3OXL A;  2A20 A;  5JHW C;  1IW4 A;  3HH2 C;  5J8C A;  2SGQ I;  4E1R A;  2CWG A;  2GKV A;  2ORW A;  3MEK A;  3UOE A;  1LR9 A;  1OMU A;  1TGS I;  1W3S A;  3OL0 A;  3UEY A;  2JZM A;  4WP4 A;  3VDP A;  4HGU A;  1R79 A;  2UVO A;  2NU1 I;  2GKT I;  2X3T A;  5HQ8 A;  2J87 A;  1CGJ I;  1TUS A;  2Y0M A;  1FAQ A;  3CXL A;  1OYV I;  2K9H A;  3PDN A;  3UFF A;  1PTQ A;  7WGA A;  2X52 A;  2CWF A;  1LR8 A;  1N13 A;  1FY7 A;  3UGD A;  2OZU A;  2ORV A;  1TBO A;  1DS3 I;  1SGQ I;  2JYY A;  1TBR R;  2QQD A;  2E5R A;  5FUX A;  2JXD A;  3UGI A;  4AML A;  1P9Z A;  4UXJ A;  4E1P A;  5EX0 A;  1Y1C A;  1Z7K B;  5EX3 A;  3E59 A;  2YQP A;  1CSO I;  2N71 A;  1CT4 I;  2WCY A;  1Y1B A;  1AN1 I;  3SGB I;  1KMA A;  1IY6 A;  1MJB A;  2RC4 A;  3R5B A;  1CE3 A;  3TOA A;  1SGD I;  1BUS A;  2QPO A;  4DNC A;  3D00 A;  3R5D A;  5FUW A;  2ROW A;  3TO6 A;  2SGF I;  3OXF A;  5CCM A;  2QQC A;  1TIH A;  1XBT A;  1PJU A;  1Y8F A;  2XRC A;  3QWP A;  4GI3 C;  4SGB I;  2NU4 I;  2SGD I;  3BJI A;  1WGC A;  1H0Z A;  3GOX A;  1VDD A;  2QQ0 A;  3UGL A;  3SGQ I;  3QAH A;  2N52 A;  2SGP I;  4B6D A;  2KMP A;  1SGY I;  2B0U C;  2YUU A;  5E3Q A;  1MJA A;  1V1I A;  1WKX A;  4L9M A;  5E3R A;  1OVO A;  1RFH A;  1V1H A;  1NXU A;  2ENZ A;  2PQ8 A;  2L8E A;  1BMO A;  4FKD A;  1NUB A;  1PTR A;  1TOT A;  1K7U A;  1FYB A;  1XA6 A;  3KY9 A;  3R5C A;  3VE5 A;  4UXH A;  2N1A B;  1OMT A;  3TO7 A;  1HJA I;  3TJQ A;  2M5X A;  1X74 A;  2OU2 A;  2ODD A;  2J9R A;  1TUR A;  1ULM A;  2OD1 A;  1K7V A;  1YU6 C;  3TOB A;  3VDU A;  2ELI A;  2DKV A;  1U5K A;  1ULN A;  2ERW A;  1HEV A;  2WVJ A;  1KBF A;  2SGE I;  2GKR I;  2P6A C;  5J8F A;  1S20 A;  3UEJ A;  3FC3 A;  3SEK C;  3QTL D;  1PCE A;  3FSY A;  2UZ3 A;  2ENN A; 
#chains in the Genus database with same CATH homology
 2BUS A;  1LR7 A;  2L7X A;  2V1C C;  2V1C A;  1TBN A;  2FNF X;  2OVO A;  1KBE A;  1UVF A;  2LEO A;  2KMO A;  2V53 A;  2VRW B;  1MT1 A;  1SGR I;  1W4R A;  2KMQ A;  4JCV E;  1FAQ A;  1CGI I;  1YTP A;  2N17 A;  1CHO I;  1TBQ R;  2DB6 A;  1HDL A;  1M8B A;  1CT0 I;  2JW6 A;  1SGE I;  2KMR A;  4A24 A;  2NU2 I;  2NU3 I;  3OVO A;  1IY5 A;  1UUC A;  2JA1 A;  3OXG A;  3RU0 A;  2ARP F;  2B8T A;  2NU0 I;  2W0T A;  1FAR A;  1X4S A;  3E2I A;  2KCX A;  4UXI A;  2LUY A;  4OVO A;  1CT2 I;  1M8C A;  2F3C I;  1UVG A;  1PPF I;  2DIP A;  2GVI A;  5FUV A;  1XX6 A;  5FUY A;  5CCL A;  1SGN I;  1R0R I;  2CJS C;  2E73 A;  2QQE A;  5HI7 A;  1HPT A;  1DS2 I;  1SGP I;  3B4V C;  3OXL A;  2A20 A;  5JHW C;  1IW4 A;  3HH2 C;  2SGQ I;  4E1R A;  2ORW A;  2GKV A;  3MEK A;  1LR9 A;  1OMU A;  1TGS I;  1W3S A;  3OL0 A;  3UEY A;  2JZM A;  3VDP A;  4HGU A;  1R79 A;  2NU1 I;  2GKT I;  5HQ8 A;  2J87 A;  1CGJ I;  1TUS A;  3CXL A;  1OYV I;  2K9H A;  3PDN A;  3UFF A;  1PTQ A;  1LR8 A;  1N13 A;  3UGD A;  2ORV A;  1TBO A;  1DS3 I;  1SGQ I;  2JYY A;  1TBR R;  2QQD A;  2E5R A;  5FUX A;  2JXD A;  3UGI A;  4UXJ A;  4E1P A;  5EX0 A;  1Y1C A;  1Z7K B;  5EX3 A;  3E59 A;  2YQP A;  1CSO I;  2N71 A;  1CT4 I;  2WCY A;  1Y1B A;  1AN1 I;  3SGB I;  1KMA A;  1IY6 A;  1CE3 A;  1BUS A;  1SGD I;  2QPO A;  3D00 A;  5FUW A;  5CCM A;  2ROW A;  2SGF I;  3OXF A;  2QQC A;  1TIH A;  1XBT A;  1PJU A;  1Y8F A;  2XRC A;  3QWP A;  4GI3 C;  4SGB I;  2NU4 I;  2SGD I;  3BJI A;  1H0Z A;  3GOX A;  1VDD A;  2QQ0 A;  3UGL A;  3SGQ I;  2N52 A;  2SGP I;  4B6D A;  2KMP A;  1SGY I;  2B0U C;  2YUU A;  1V1I A;  4L9M A;  1OVO A;  1RFH A;  1V1H A;  2ENZ A;  2L8E A;  1BMO A;  4FKD A;  1NUB A;  1PTR A;  1TOT A;  1FYB A;  1XA6 A;  3KY9 A;  3VE5 A;  4UXH A;  2N1A B;  1OMT A;  1HJA I;  3TJQ A;  2M5X A;  1X74 A;  2ODD A;  2J9R A;  1TUR A;  2OD1 A;  1YU6 C;  3VDU A;  2ELI A;  1U5K A;  2ERW A;  2WVJ A;  1KBF A;  2SGE I;  2GKR I;  2P6A C;  3UEJ A;  3FC3 A;  3SEK C;  3QTL D;  1PCE A;  5DAE A;  2UZ3 A;  2ENN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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