2OD1A

Solution structure of the mynd domain from human aml1-eto
Total Genus 6
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
6
sequence length
50
structure length
50
Chain Sequence
DSSESCWNCGRKASETCSGCNTARYCGSFCQHKDWEKHHHICGQTLQAQQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Metal binding protein
molecule keywords Protein CBFA2T1
publication title Structural basis for recognition of SMRT/N-CoR by the MYND domain and its contribution to AML1/ETO's activity.
pubmed doi rcsb
source organism Homo sapiens
total genus 6
structure length 50
sequence length 50
ec nomenclature
pdb deposition date 2006-12-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01753 zf-MYND MYND finger
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.180 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 2od1A00
5EX0A 2JW6A 3QWPA 3OXLA 3OXGA 5CCLA 4A24A 5CCMA 3OXFA 3MEKA 5EX3A 3PDNA 3RU0A 5HQ8A 2OD1A 5HI7A 2ODDA
chains in the Genus database with same CATH superfamily
1SGYI 2XRCA 4FKDA 3HH2C 2DIPA 3OVOA 2NU0I 1LR7A 1OMUA 2CWHA 2NU3I 2LB7A 3FC3A 1IW4A 1Y1CA 2GIVA 5CCMA 1FYBA 1V1IA 1LR9A 2ODDA 3R5AA 3GOXA 1CGII 5DAEA 2ELIA 2LUYA 2OVOA 2SGPI 2SGEI 1XX6A 1AN1I 4E1RA 2A20A 3RU0A 1TBRR 5FUWA 3UGLA 4SGBI 1HDLA 2B8TA 1Y8FA 1RFHA 2ERWA 1OMTA 2F3CI 2WCYA 1X74A 1PJUA 2GKRI 1WGTA 1HPTA 2X3TA 2JW6A 5FUYA 1ULNA 2JZMA 2SGQI 2ENNA 1TURA 1BMOA 1K7TA 2DB6A 1SGEI 1DS3I 4HGUA 1W3SA 2RC4A 4WP4A 1OYVI 2V1CC 3UGIA 3QAHA 3UEYA 2LEOA 3CXLA 3KY9A 1UVFA 2FNFX 3R5CA 1H0ZA 2KMPA 3VDPA 2L7XA 2NU1I 4JCVE 2P6AC 1HEVA 2JYYA 1CSOI 4MPIA 2CJSC 3TO7A 1R79A 3FSXA 2WVJA 1KBEA 3TO9A 2CWFA 2VRWB 4DNCA 1TBQR 2GKVA 1TBNA 5J8FA 2OD1A 5CCLA 2ENZA 1SGDI 3D00A 1YU6C 2GKTI 1VDDA 2JA1A 1CHOI 2YQPA 1IY5A 1WTJA 2M5XA 3PDNA 3UGDA 3UFFA 5HQ8A 3SGBI 1TBOA 2QQEA 3QWPA 1Q9BA 1MT1A 2NU2I 2UVOA 1PTRA 1Y1BA 1X4SA 5J8CA 1TUSA 2CWGA 3TOBA 2WGCA 1SGQI 2KMQA 3TJQA 2QQCA 1KBFA 2J87A 3E59A 4A24A 5JHWC 1NXUA 2QQDA 1S20A 1TOTA 1PTQA 2YUUA 2E5RA 1NUBA 3TO6A 1DS2I 1UUCA 2DKVA 2L8EA 4E1PA 2SGFI 1SGNI 3OXLA 1CT2I 1M8CA 2K9HA 3VE5A 1Z2IA 4AMLA 4B6DA 2N52A 9WGAA 2B0UC 1HJAI 3UEJA 1UVGA 2V1CA 1PPFI 3FSYA 3R5DA 2QPOA 1MJBA 2SGDI 1P9ZA 1CE3A 1CGJI 1UHAA 2N17A 5E3PA 3OXFA 1XA6A 1FARA 1V1HA 1SGPI 2OZUA 3MEKA 2KMRA 2W0TA 2RIJA 1W4RA 1IY6A 1K7VA 1LR8A 5E3QA 3OXGA 1ULKA 4GI3C 4UXHA 1P9GA 1XBTA 3QTLD 4UXJA 1BUSA 1WGCA 3SGQI 1U5KA 1TIHA 1Z7KB 5HI7A 1WKXA 1CT4I 1M8BA 1ULMA 4UXIA 1FY7A 3VDUA 2ORVA 2UZ3A 3OL0A 2E73A 1CT0I 2Y0MA 5E3RA 2ORWA 7WGAA 1KMAA 3E2IA 2NU4I 1FAQA 2X52A 1MJAA 4OVOA 1N13A 2PQ8A 1YTPA 2V53A 1MJ9A 2KCXA 5FUXA 5EX3A 2KMOA 3UOEA 3SEKC 5EX0A 2QQ0A 2OU2A 3BJIA 1OVOA 5FUVA 3B4VC 1R0RI 2N1AB 1PCEA 2BUSA 3TOAA 2JXDA 1K7UA 2GVIA 4L9MA 3R5BA 1TGSI 2J9RA 1SGRI 2N71A 2ROWA 2ARPF
chains in the Genus database with same CATH topology
1SGYI 2XRCA 4FKDA 3HH2C 2DIPA 3OVOA 2NU0I 1LR7A 1OMUA 2NU3I 3FC3A 1IW4A 1Y1CA 5CCMA 1FYBA 1V1IA 1LR9A 2ODDA 3GOXA 1CGII 5DAEA 2ELIA 2LUYA 2OVOA 2SGPI 2SGEI 1XX6A 1AN1I 4E1RA 2A20A 3RU0A 1TBRR 5FUWA 3UGLA 4SGBI 1HDLA 2B8TA 1Y8FA 1RFHA 2ERWA 1OMTA 2F3CI 2WCYA 1X74A 1PJUA 2GKRI 1HPTA 5FUYA 2JW6A 2JZMA 2SGQI 2ENNA 1TURA 1BMOA 2DB6A 1SGEI 1DS3I 4HGUA 1W3SA 3UGIA 1OYVI 2V1CC 3UEYA 2LEOA 3CXLA 3KY9A 1UVFA 2FNFX 1H0ZA 2KMPA 3VDPA 2L7XA 2NU1I 4JCVE 2P6AC 2JYYA 1CSOI 2CJSC 1R79A 2WVJA 1KBEA 2VRWB 1TBQR 2GKVA 1TBNA 2OD1A 5CCLA 2ENZA 1SGDI 3D00A 1YU6C 2GKTI 1VDDA 2JA1A 1CHOI 2YQPA 1IY5A 2M5XA 3PDNA 3UGDA 3UFFA 5HQ8A 3SGBI 1TBOA 2QQEA 3QWPA 1MT1A 2NU2I 1PTRA 1Y1BA 1X4SA 1TUSA 1SGQI 2KMQA 3TJQA 2QQCA 1KBFA 2J87A 3E59A 4A24A 5JHWC 2QQDA 1TOTA 1PTQA 2YUUA 2E5RA 1NUBA 1DS2I 1UUCA 2L8EA 4E1PA 2SGFI 1SGNI 3OXLA 1CT2I 1M8CA 2K9HA 3VE5A 4B6DA 2N52A 2B0UC 1HJAI 3UEJA 1UVGA 2V1CA 1PPFI 2QPOA 2SGDI 1CE3A 1CGJI 2N17A 3OXFA 1XA6A 1FARA 1V1HA 1SGPI 3MEKA 2KMRA 2W0TA 1W4RA 1IY6A 1LR8A 3OXGA 4GI3C 4UXHA 1XBTA 3QTLD 4UXJA 1BUSA 3SGQI 1U5KA 1TIHA 1Z7KB 5HI7A 1CT4I 1M8BA 4UXIA 3VDUA 2ORVA 2UZ3A 3OL0A 2E73A 1CT0I 2ORWA 1KMAA 3E2IA 2NU4I 1FAQA 4OVOA 1N13A 2V53A 1YTPA 2KCXA 5FUXA 5EX3A 2KMOA 3SEKC 5EX0A 2QQ0A 3BJIA 1OVOA 5FUVA 3B4VC 1R0RI 2N1AB 1PCEA 2BUSA 2JXDA 2GVIA 4L9MA 1TGSI 2J9RA 1SGRI 2N71A 2ROWA 2ARPF
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5EX0 A;  2JW6 A;  3QWP A;  3OXL A;  3OXG A;  5CCL A;  4A24 A;  5CCM A;  3OXF A;  3MEK A;  5EX3 A;  3PDN A;  3RU0 A;  5HQ8 A;  2OD1 A;  5HI7 A;  2ODD A; 
#chains in the Genus database with same CATH topology
 1SGY I;  2XRC A;  4FKD A;  3HH2 C;  2DIP A;  3OVO A;  2NU0 I;  1LR7 A;  1OMU A;  2CWH A;  2NU3 I;  2LB7 A;  3FC3 A;  1IW4 A;  1Y1C A;  2GIV A;  5CCM A;  1FYB A;  1V1I A;  1LR9 A;  2ODD A;  3R5A A;  3GOX A;  1CGI I;  5DAE A;  2ELI A;  2LUY A;  2OVO A;  2SGP I;  2SGE I;  1XX6 A;  1AN1 I;  4E1R A;  2A20 A;  3RU0 A;  1TBR R;  5FUW A;  3UGL A;  4SGB I;  1HDL A;  2B8T A;  1Y8F A;  1RFH A;  2ERW A;  1OMT A;  2F3C I;  2WCY A;  1X74 A;  1PJU A;  2GKR I;  1WGT A;  1HPT A;  2X3T A;  2JW6 A;  5FUY A;  1ULN A;  2JZM A;  2SGQ I;  2ENN A;  1TUR A;  1BMO A;  1K7T A;  2DB6 A;  1SGE I;  1DS3 I;  4HGU A;  1W3S A;  2RC4 A;  4WP4 A;  1OYV I;  2V1C C;  3UGI A;  3QAH A;  3UEY A;  2LEO A;  3CXL A;  3KY9 A;  1UVF A;  2FNF X;  3R5C A;  1H0Z A;  2KMP A;  3VDP A;  2L7X A;  2NU1 I;  4JCV E;  2P6A C;  1HEV A;  2JYY A;  1CSO I;  4MPI A;  2CJS C;  3TO7 A;  1R79 A;  3FSX A;  2WVJ A;  1KBE A;  3TO9 A;  2CWF A;  2VRW B;  4DNC A;  1TBQ R;  2GKV A;  1TBN A;  5J8F A;  2OD1 A;  5CCL A;  2ENZ A;  1SGD I;  3D00 A;  1YU6 C;  2GKT I;  1VDD A;  2JA1 A;  1CHO I;  2YQP A;  1IY5 A;  1WTJ A;  2M5X A;  3PDN A;  3UGD A;  3UFF A;  5HQ8 A;  3SGB I;  1TBO A;  2QQE A;  3QWP A;  1Q9B A;  1MT1 A;  2NU2 I;  2UVO A;  1PTR A;  1Y1B A;  1X4S A;  5J8C A;  1TUS A;  2CWG A;  3TOB A;  2WGC A;  1SGQ I;  2KMQ A;  3TJQ A;  2QQC A;  1KBF A;  2J87 A;  3E59 A;  4A24 A;  5JHW C;  1NXU A;  2QQD A;  1S20 A;  1TOT A;  1PTQ A;  2YUU A;  2E5R A;  1NUB A;  3TO6 A;  1DS2 I;  1UUC A;  2DKV A;  2L8E A;  4E1P A;  2SGF I;  1SGN I;  3OXL A;  1CT2 I;  1M8C A;  2K9H A;  3VE5 A;  1Z2I A;  4AML A;  4B6D A;  2N52 A;  9WGA A;  2B0U C;  1HJA I;  3UEJ A;  1UVG A;  2V1C A;  1PPF I;  3FSY A;  3R5D A;  2QPO A;  1MJB A;  2SGD I;  1P9Z A;  1CE3 A;  1CGJ I;  1UHA A;  2N17 A;  5E3P A;  3OXF A;  1XA6 A;  1FAR A;  1V1H A;  1SGP I;  2OZU A;  3MEK A;  2KMR A;  2W0T A;  2RIJ A;  1W4R A;  1IY6 A;  1K7V A;  1LR8 A;  5E3Q A;  3OXG A;  1ULK A;  4GI3 C;  4UXH A;  1P9G A;  1XBT A;  3QTL D;  4UXJ A;  1BUS A;  1WGC A;  3SGQ I;  1U5K A;  1TIH A;  1Z7K B;  5HI7 A;  1WKX A;  1CT4 I;  1M8B A;  1ULM A;  4UXI A;  1FY7 A;  3VDU A;  2ORV A;  2UZ3 A;  3OL0 A;  2E73 A;  1CT0 I;  2Y0M A;  5E3R A;  2ORW A;  7WGA A;  1KMA A;  3E2I A;  2NU4 I;  1FAQ A;  2X52 A;  1MJA A;  4OVO A;  1N13 A;  2PQ8 A;  1YTP A;  2V53 A;  1MJ9 A;  2KCX A;  5FUX A;  5EX3 A;  2KMO A;  3UOE A;  3SEK C;  5EX0 A;  2QQ0 A;  2OU2 A;  3BJI A;  1OVO A;  5FUV A;  3B4V C;  1R0R I;  2N1A B;  1PCE A;  2BUS A;  3TOA A;  2JXD A;  1K7U A;  2GVI A;  4L9M A;  3R5B A;  1TGS I;  2J9R A;  1SGR I;  2N71 A;  2ROW A;  2ARP F; 
#chains in the Genus database with same CATH homology
 1SGY I;  2XRC A;  4FKD A;  3HH2 C;  2DIP A;  3OVO A;  2NU0 I;  1LR7 A;  1OMU A;  2NU3 I;  3FC3 A;  1IW4 A;  1Y1C A;  5CCM A;  1FYB A;  1V1I A;  1LR9 A;  2ODD A;  3GOX A;  1CGI I;  5DAE A;  2ELI A;  2LUY A;  2OVO A;  2SGP I;  2SGE I;  1XX6 A;  1AN1 I;  4E1R A;  2A20 A;  3RU0 A;  1TBR R;  5FUW A;  3UGL A;  4SGB I;  1HDL A;  2B8T A;  1Y8F A;  1RFH A;  2ERW A;  1OMT A;  2F3C I;  2WCY A;  1X74 A;  1PJU A;  2GKR I;  1HPT A;  5FUY A;  2JW6 A;  2JZM A;  2SGQ I;  2ENN A;  1TUR A;  1BMO A;  2DB6 A;  1SGE I;  1DS3 I;  4HGU A;  1W3S A;  3UGI A;  1OYV I;  2V1C C;  3UEY A;  2LEO A;  3CXL A;  3KY9 A;  1UVF A;  2FNF X;  1H0Z A;  2KMP A;  3VDP A;  2L7X A;  2NU1 I;  4JCV E;  2P6A C;  2JYY A;  1CSO I;  2CJS C;  1R79 A;  2WVJ A;  1KBE A;  2VRW B;  1TBQ R;  2GKV A;  1TBN A;  2OD1 A;  5CCL A;  2ENZ A;  1SGD I;  3D00 A;  1YU6 C;  2GKT I;  1VDD A;  2JA1 A;  1CHO I;  2YQP A;  1IY5 A;  2M5X A;  3PDN A;  3UGD A;  3UFF A;  5HQ8 A;  3SGB I;  1TBO A;  2QQE A;  3QWP A;  1MT1 A;  2NU2 I;  1PTR A;  1Y1B A;  1X4S A;  1TUS A;  1SGQ I;  2KMQ A;  3TJQ A;  2QQC A;  1KBF A;  2J87 A;  3E59 A;  4A24 A;  5JHW C;  2QQD A;  1TOT A;  1PTQ A;  2YUU A;  2E5R A;  1NUB A;  1DS2 I;  1UUC A;  2L8E A;  4E1P A;  2SGF I;  1SGN I;  3OXL A;  1CT2 I;  1M8C A;  2K9H A;  3VE5 A;  4B6D A;  2N52 A;  2B0U C;  1HJA I;  3UEJ A;  1UVG A;  2V1C A;  1PPF I;  2QPO A;  2SGD I;  1CE3 A;  1CGJ I;  2N17 A;  3OXF A;  1XA6 A;  1FAR A;  1V1H A;  1SGP I;  3MEK A;  2KMR A;  2W0T A;  1W4R A;  1IY6 A;  1LR8 A;  3OXG A;  4GI3 C;  4UXH A;  1XBT A;  3QTL D;  4UXJ A;  1BUS A;  3SGQ I;  1U5K A;  1TIH A;  1Z7K B;  5HI7 A;  1CT4 I;  1M8B A;  4UXI A;  3VDU A;  2ORV A;  2UZ3 A;  3OL0 A;  2E73 A;  1CT0 I;  2ORW A;  1KMA A;  3E2I A;  2NU4 I;  1FAQ A;  4OVO A;  1N13 A;  2V53 A;  1YTP A;  2KCX A;  5FUX A;  5EX3 A;  2KMO A;  3SEK C;  5EX0 A;  2QQ0 A;  3BJI A;  1OVO A;  5FUV A;  3B4V C;  1R0R I;  2N1A B;  1PCE A;  2BUS A;  2JXD A;  2GVI A;  4L9M A;  1TGS I;  2J9R A;  1SGR I;  2N71 A;  2ROW A;  2ARP F; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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