1WKXA

Crystal structure of a hev b 6.02 isoallergen
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
43
structure length
43
Chain Sequence
EQCGRQAGGKLCPDNLCCSQWGWCGSTDEYCSPDHNCQSNCKD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Allergen
publication title Structural and Immunological Characterization of an Isoallergen of Hev b 6.02
rcsb
molecule keywords HEVEIN ISOFORM 2
total genus 13
structure length 43
sequence length 43
ec nomenclature
pdb deposition date 2004-06-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00187 Chitin_bind_1 Chitin recognition protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 1wkxA00
1K7UA 2LB7A 1UHAA 2UVOA 2DKVA 1ULMA 7WGAA 1WGCA 4MPIA 1P9ZA 1ULKA 1Q9BA 1ULNA 1HEVA 1WGTA 2X52A 2WGCA 4AMLA 1K7VA 1P9GA 9WGAA 1K7TA 2CWGA 2X3TA 4WP4A 1WKXA
chains in the Genus database with same CATH superfamily
5E3PA 1HJAI 2CJSC 1K7UA 1UVFA 2GIVA 1UHAA 4E1PA 2JYYA 2QQ0A 2N71A 1LR7A 2UVOA 2XRCA 1AN1I 1ULMA 2JXDA 3B4VC 1S20A 3RU0A 2W0TA 2ARPF 1WGCA 2FNFX 2V1CA 3SGBI 1H0ZA 2SGFI 1SGDI 1TUSA 1Y1BA 2Y0MA 3FSXA 3R5DA 1SGYI 4SGBI 1ULNA 1CT0I 2JA1A 1TBNA 1RFHA 1U5KA 2N52A 2PQ8A 3E2IA 1CGJI 4B6DA 4AMLA 5HQ8A 2ELIA 5FUVA 1X74A 3D00A 1MJBA 2V53A 2N1AB 5DAEA 3OXLA 2NU0I 2J87A 1IY5A 9WGAA 1TIHA 2B8TA 2OU2A 1PJUA 3PDNA 1TGSI 2QPOA 3TOBA 4WP4A 1CGII 3E59A 1UVGA 1BMOA 4HGUA 5EX3A 1R79A 2E5RA 1SGPI 1CSOI 2JW6A 2ORVA 2OVOA 1LR8A 2LB7A 1Z2IA 2M5XA 1LR9A 2V1CC 2SGDI 1Y8FA 2LUYA 2DKVA 3TO6A 1VDDA 1W4RA 2BUSA 2VRWB 2DB6A 2ERWA 2NU4I 2ODDA 3SEKC 3MEKA 2WCYA 2NU1I 4UXIA 3BJIA 1XBTA 1Z7KB 4FKDA 1ULKA 1DS3I 1XX6A 2ROWA 4E1RA 2RIJA 1SGRI 2WVJA 2KMOA 5E3QA 1HEVA 1TBQR 1OMTA 1UUCA 3OXFA 1N13A 2ENZA 2SGEI 4DNCA 3UEYA 2GKVA 3R5CA 3UGIA 3TJQA 1CHOI 5HI7A 5FUYA 2CWFA 2GKRI 1NXUA 1OMUA 4UXHA 2KCXA 2YUUA 2YQPA 1PTRA 2CWHA 1SGQI 3KY9A 1IW4A 1DS2I 5E3RA 3UOEA 2F3CI 3SGQI 3QTLD 2ORWA 7WGAA 1W3SA 1KBEA 1MJ9A 3UGLA 2P6AC 4MPIA 1P9ZA 1TBOA 1V1IA 2JZMA 1OYVI 3OL0A 1TOTA 1WGTA 2NU2I 2X52A 1M8BA 2WGCA 3HH2C 2J9RA 5EX0A 5FUXA 1KMAA 2QQDA 3GOXA 2KMRA 3QWPA 1FAQA 1NUBA 1PTQA 2ENNA 3TO7A 2B0UC 1P9GA 1CT2I 2L8EA 2RC4A 2X3TA 2KMQA 3R5AA 2LEOA 1YTPA 1M8CA 3VE5A 1V1HA 1Y1CA 2A20A 1MJAA 3OXGA 1PPFI 1MT1A 1WKXA 1FY7A 1TBRR 3QAHA 4GI3C 2OZUA 3TO9A 2OD1A 3R5BA 2K9HA 1CE3A 1TURA 2DIPA 2QQCA 5FUWA 1WTJA 3UFFA 4UXJA 5J8FA 1CT4I 4JCVE 3VDPA 1SGNI 5J8CA 1HPTA 2NU3I 2SGQI 1PCEA 4OVOA 3UEJA 1SGEI 3UGDA 3VDUA 5CCMA 3FC3A 5JHWC 3CXLA 1HDLA 3TOAA 1YU6C 1Q9BA 1FYBA 4L9MA 2UZ3A 1R0RI 2N17A 1OVOA 1FARA 1K7VA 1X4SA 3OVOA 5CCLA 2E73A 2KMPA 2L7XA 3FSYA 1K7TA 1KBFA 2CWGA 2GVIA 1BUSA 1XA6A 1IY6A 2GKTI 4A24A 2SGPI 2QQEA
chains in the Genus database with same CATH topology
1K7UA 2LB7A 1UHAA 2UVOA 2DKVA 1ULMA 7WGAA 1WGCA 4MPIA 1P9ZA 1ULKA 1Q9BA 1ULNA 1HEVA 1WGTA 2X52A 2WGCA 4AMLA 1K7VA 1P9GA 9WGAA 1K7TA 2CWGA 2X3TA 4WP4A 1WKXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1K7U A;  2LB7 A;  1UHA A;  2UVO A;  2DKV A;  1ULM A;  7WGA A;  1WGC A;  4MPI A;  1P9Z A;  1ULK A;  1Q9B A;  1ULN A;  1HEV A;  1WGT A;  2X52 A;  2WGC A;  4AML A;  1K7V A;  1P9G A;  9WGA A;  1K7T A;  2CWG A;  2X3T A;  4WP4 A;  1WKX A; 
#chains in the Genus database with same CATH topology
 5E3P A;  1HJA I;  2CJS C;  1K7U A;  1UVF A;  2GIV A;  1UHA A;  4E1P A;  2JYY A;  2QQ0 A;  2N71 A;  1LR7 A;  2UVO A;  2XRC A;  1AN1 I;  1ULM A;  2JXD A;  3B4V C;  1S20 A;  3RU0 A;  2W0T A;  2ARP F;  1WGC A;  2FNF X;  2V1C A;  3SGB I;  1H0Z A;  2SGF I;  1SGD I;  1TUS A;  1Y1B A;  2Y0M A;  3FSX A;  3R5D A;  1SGY I;  4SGB I;  1ULN A;  1CT0 I;  2JA1 A;  1TBN A;  1RFH A;  1U5K A;  2N52 A;  2PQ8 A;  3E2I A;  1CGJ I;  4B6D A;  4AML A;  5HQ8 A;  2ELI A;  5FUV A;  1X74 A;  3D00 A;  1MJB A;  2V53 A;  2N1A B;  5DAE A;  3OXL A;  2NU0 I;  2J87 A;  1IY5 A;  9WGA A;  1TIH A;  2B8T A;  2OU2 A;  1PJU A;  3PDN A;  1TGS I;  2QPO A;  3TOB A;  4WP4 A;  1CGI I;  3E59 A;  1UVG A;  1BMO A;  4HGU A;  5EX3 A;  1R79 A;  2E5R A;  1SGP I;  1CSO I;  2JW6 A;  2ORV A;  2OVO A;  1LR8 A;  2LB7 A;  1Z2I A;  2M5X A;  1LR9 A;  2V1C C;  2SGD I;  1Y8F A;  2LUY A;  2DKV A;  3TO6 A;  1VDD A;  1W4R A;  2BUS A;  2VRW B;  2DB6 A;  2ERW A;  2NU4 I;  2ODD A;  3SEK C;  3MEK A;  2WCY A;  2NU1 I;  4UXI A;  3BJI A;  1XBT A;  1Z7K B;  4FKD A;  1ULK A;  1DS3 I;  1XX6 A;  2ROW A;  4E1R A;  2RIJ A;  1SGR I;  2WVJ A;  2KMO A;  5E3Q A;  1HEV A;  1TBQ R;  1OMT A;  1UUC A;  3OXF A;  1N13 A;  2ENZ A;  2SGE I;  4DNC A;  3UEY A;  2GKV A;  3R5C A;  3UGI A;  3TJQ A;  1CHO I;  5HI7 A;  5FUY A;  2CWF A;  2GKR I;  1NXU A;  1OMU A;  4UXH A;  2KCX A;  2YUU A;  2YQP A;  1PTR A;  2CWH A;  1SGQ I;  3KY9 A;  1IW4 A;  1DS2 I;  5E3R A;  3UOE A;  2F3C I;  3SGQ I;  3QTL D;  2ORW A;  7WGA A;  1W3S A;  1KBE A;  1MJ9 A;  3UGL A;  2P6A C;  4MPI A;  1P9Z A;  1TBO A;  1V1I A;  2JZM A;  1OYV I;  3OL0 A;  1TOT A;  1WGT A;  2NU2 I;  2X52 A;  1M8B A;  2WGC A;  3HH2 C;  2J9R A;  5EX0 A;  5FUX A;  1KMA A;  2QQD A;  3GOX A;  2KMR A;  3QWP A;  1FAQ A;  1NUB A;  1PTQ A;  2ENN A;  3TO7 A;  2B0U C;  1P9G A;  1CT2 I;  2L8E A;  2RC4 A;  2X3T A;  2KMQ A;  3R5A A;  2LEO A;  1YTP A;  1M8C A;  3VE5 A;  1V1H A;  1Y1C A;  2A20 A;  1MJA A;  3OXG A;  1PPF I;  1MT1 A;  1WKX A;  1FY7 A;  1TBR R;  3QAH A;  4GI3 C;  2OZU A;  3TO9 A;  2OD1 A;  3R5B A;  2K9H A;  1CE3 A;  1TUR A;  2DIP A;  2QQC A;  5FUW A;  1WTJ A;  3UFF A;  4UXJ A;  5J8F A;  1CT4 I;  4JCV E;  3VDP A;  1SGN I;  5J8C A;  1HPT A;  2NU3 I;  2SGQ I;  1PCE A;  4OVO A;  3UEJ A;  1SGE I;  3UGD A;  3VDU A;  5CCM A;  3FC3 A;  5JHW C;  3CXL A;  1HDL A;  3TOA A;  1YU6 C;  1Q9B A;  1FYB A;  4L9M A;  2UZ3 A;  1R0R I;  2N17 A;  1OVO A;  1FAR A;  1K7V A;  1X4S A;  3OVO A;  5CCL A;  2E73 A;  2KMP A;  2L7X A;  3FSY A;  1K7T A;  1KBF A;  2CWG A;  2GVI A;  1BUS A;  1XA6 A;  1IY6 A;  2GKT I;  4A24 A;  2SGP I;  2QQE A; 
#chains in the Genus database with same CATH homology
 1K7U A;  2LB7 A;  1UHA A;  2UVO A;  2DKV A;  1ULM A;  7WGA A;  1WGC A;  4MPI A;  1P9Z A;  1ULK A;  1Q9B A;  1ULN A;  1HEV A;  1WGT A;  2X52 A;  2WGC A;  4AML A;  1K7V A;  1P9G A;  9WGA A;  1K7T A;  2CWG A;  2X3T A;  4WP4 A;  1WKX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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