1WKXA

Crystal structure of a hev b 6.02 isoallergen
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
43
structure length
43
Chain Sequence
EQCGRQAGGKLCPDNLCCSQWGWCGSTDEYCSPDHNCQSNCKD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords HEVEIN ISOFORM 2
publication title Structural and Immunological Characterization of an Isoallergen of Hev b 6.02
rcsb
molecule tags Allergen
total genus 13
structure length 43
sequence length 43
ec nomenclature
pdb deposition date 2004-06-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00187 Chitin_bind_1 Chitin recognition protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 1wkxA00
2X52A 2DKVA 4AMLA 1Q9BA 4MPIA 9WGAA 1HEVA 1ULMA 1K7UA 2LB7A 1WKXA 1P9ZA 2UVOA 2WGCA 4WP4A 1K7TA 2X3TA 1WGTA 1ULNA 1ULKA 1WGCA 7WGAA 1K7VA 2CWGA 1UHAA 1P9GA
chains in the Genus database with same CATH superfamily
1SGNI 1CGII 3OVOA 1KMAA 1CT2I 2OZUA 4MPIA 4FKDA 4E1PA 3QTLD 1HEVA 3VDPA 1W3SA 5E3QA 3R5BA 4GI3C 1MJ9A 3UGLA 2B8TA 2ORWA 2LB7A 1IW4A 2SGFI 5EX3A 5CCMA 2J9RA 1V1IA 2GKRI 3PDNA 2UVOA 3OL0A 4A24A 1Y1BA 1KBEA 1UUCA 2NU0I 2QPOA 2PQ8A 2X3TA 1X74A 1S20A 1BMOA 1SGPI 3HH2C 1RFHA 1ULNA 2V1CA 1ULKA 1TBRR 1Y1CA 2SGQI 3CXLA 1M8CA 3SGBI 2V1CC 2RC4A 1U5KA 5E3RA 1TBQR 2A20A 3RU0A 1IY6A 1OVOA 2XRCA 2N17A 2N71A 2YQPA 1DS3I 5J8CA 1P9GA 1SGEI 1CT4I 2OVOA 2ENZA 2QQ0A 2DKVA 2SGPI 2FNFX 2ORVA 4AMLA 4E1RA 1FAQA 1CGJI 1OMUA 3E59A 1LR8A 2NU3I 2N1AB 3FSYA 2JA1A 2ARPF 1NUBA 1ULMA 1K7UA 1SGYI 4UXIA 1M8BA 2ODDA 4HGUA 1LR7A 2N52A 2CWFA 2DB6A 2UZ3A 2KMQA 3VE5A 5J8FA 1CT0I 2WGCA 1NXUA 3GOXA 1H0ZA 2ERWA 1K7TA 1PCEA 3SEKC 2QQCA 1TBOA 1MJAA 5FUYA 2LUYA 2LEOA 1WGTA 1MT1A 1PTRA 1CHOI 2ELIA 2JZMA 2NU4I 2SGDI 5DAEA 5HI7A 1HDLA 1TOTA 3OXFA 1HPTA 1PJUA 1SGQI 1WGCA 2B0UC 1KBFA 2E73A 3TO6A 2CWHA 2WVJA 2JYYA 1PPFI 3OXGA 3UEJA 2CWGA 1LR9A 3SGQI 2ENNA 3FC3A 1UVGA 2J87A 3FSXA 1Z2IA 2P6AC 2RIJA 2SGEI 1CSOI 1YU6C 1FYBA 2OU2A 3B4VC 3KY9A 1TUSA 4UXHA 2YUUA 1FY7A 9WGAA 1SGRI 3UGIA 2CJSC 1CE3A 3OXLA 2NU2I 1P9ZA 1XBTA 1W4RA 3BJIA 3E2IA 4WP4A 5CCLA 1YTPA 2K9HA 1TGSI 2L8EA 4DNCA 4L9MA 1TBNA 3D00A 1MJBA 3R5CA 5JHWC 2JW6A 1BUSA 1R79A 1HJAI 3UGDA 1V1HA 2F3CI 1X4SA 1XA6A 1K7VA 2KMOA 4B6DA 2Y0MA 1IY5A 1FARA 1UHAA 1OYVI 1TURA 2X52A 2V53A 5HQ8A 1PTQA 1WTJA 1Q9BA 3TJQA 3R5DA 3TO9A 4OVOA 2NU1I 4SGBI 2QQDA 1SGDI 3TOAA 2L7XA 2M5XA 4JCVE 3TO7A 1WKXA 2W0TA 2VRWB 2WCYA 2GKVA 1DS2I 2KCXA 1N13A 1XX6A 5FUVA 4UXJA 1Z7KB 1AN1I 1UVFA 1TIHA 3R5AA 3TOBA 2GVIA 2DIPA 2GKTI 3QWPA 7WGAA 2KMPA 3VDUA 2GIVA 5E3PA 1Y8FA 2BUSA 2ROWA 5FUWA 1R0RI 5EX0A 5FUXA 1OMTA 2JXDA 3QAHA 3UOEA 2QQEA 2E5RA 3UFFA 3MEKA 2OD1A 3UEYA 2KMRA 1VDDA
chains in the Genus database with same CATH topology
2X52A 2DKVA 4AMLA 1Q9BA 4MPIA 9WGAA 1HEVA 1ULMA 1K7UA 2LB7A 1WKXA 1P9ZA 2UVOA 2WGCA 4WP4A 1K7TA 2X3TA 1WGTA 1ULNA 1ULKA 1WGCA 7WGAA 1K7VA 2CWGA 1UHAA 1P9GA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2X52 A;  2DKV A;  4AML A;  1Q9B A;  4MPI A;  9WGA A;  1HEV A;  1ULM A;  1K7U A;  2LB7 A;  1WKX A;  1P9Z A;  2UVO A;  2WGC A;  4WP4 A;  1K7T A;  2X3T A;  1WGT A;  1ULN A;  1ULK A;  1WGC A;  7WGA A;  1K7V A;  2CWG A;  1UHA A;  1P9G A; 
#chains in the Genus database with same CATH topology
 1SGN I;  1CGI I;  3OVO A;  1KMA A;  1CT2 I;  2OZU A;  4MPI A;  4FKD A;  4E1P A;  3QTL D;  1HEV A;  3VDP A;  1W3S A;  5E3Q A;  3R5B A;  4GI3 C;  1MJ9 A;  3UGL A;  2B8T A;  2ORW A;  2LB7 A;  1IW4 A;  2SGF I;  5EX3 A;  5CCM A;  2J9R A;  1V1I A;  2GKR I;  3PDN A;  2UVO A;  3OL0 A;  4A24 A;  1Y1B A;  1KBE A;  1UUC A;  2NU0 I;  2QPO A;  2PQ8 A;  2X3T A;  1X74 A;  1S20 A;  1BMO A;  1SGP I;  3HH2 C;  1RFH A;  1ULN A;  2V1C A;  1ULK A;  1TBR R;  1Y1C A;  2SGQ I;  3CXL A;  1M8C A;  3SGB I;  2V1C C;  2RC4 A;  1U5K A;  5E3R A;  1TBQ R;  2A20 A;  3RU0 A;  1IY6 A;  1OVO A;  2XRC A;  2N17 A;  2N71 A;  2YQP A;  1DS3 I;  5J8C A;  1P9G A;  1SGE I;  1CT4 I;  2OVO A;  2ENZ A;  2QQ0 A;  2DKV A;  2SGP I;  2FNF X;  2ORV A;  4AML A;  4E1R A;  1FAQ A;  1CGJ I;  1OMU A;  3E59 A;  1LR8 A;  2NU3 I;  2N1A B;  3FSY A;  2JA1 A;  2ARP F;  1NUB A;  1ULM A;  1K7U A;  1SGY I;  4UXI A;  1M8B A;  2ODD A;  4HGU A;  1LR7 A;  2N52 A;  2CWF A;  2DB6 A;  2UZ3 A;  2KMQ A;  3VE5 A;  5J8F A;  1CT0 I;  2WGC A;  1NXU A;  3GOX A;  1H0Z A;  2ERW A;  1K7T A;  1PCE A;  3SEK C;  2QQC A;  1TBO A;  1MJA A;  5FUY A;  2LUY A;  2LEO A;  1WGT A;  1MT1 A;  1PTR A;  1CHO I;  2ELI A;  2JZM A;  2NU4 I;  2SGD I;  5DAE A;  5HI7 A;  1HDL A;  1TOT A;  3OXF A;  1HPT A;  1PJU A;  1SGQ I;  1WGC A;  2B0U C;  1KBF A;  2E73 A;  3TO6 A;  2CWH A;  2WVJ A;  2JYY A;  1PPF I;  3OXG A;  3UEJ A;  2CWG A;  1LR9 A;  3SGQ I;  2ENN A;  3FC3 A;  1UVG A;  2J87 A;  3FSX A;  1Z2I A;  2P6A C;  2RIJ A;  2SGE I;  1CSO I;  1YU6 C;  1FYB A;  2OU2 A;  3B4V C;  3KY9 A;  1TUS A;  4UXH A;  2YUU A;  1FY7 A;  9WGA A;  1SGR I;  3UGI A;  2CJS C;  1CE3 A;  3OXL A;  2NU2 I;  1P9Z A;  1XBT A;  1W4R A;  3BJI A;  3E2I A;  4WP4 A;  5CCL A;  1YTP A;  2K9H A;  1TGS I;  2L8E A;  4DNC A;  4L9M A;  1TBN A;  3D00 A;  1MJB A;  3R5C A;  5JHW C;  2JW6 A;  1BUS A;  1R79 A;  1HJA I;  3UGD A;  1V1H A;  2F3C I;  1X4S A;  1XA6 A;  1K7V A;  2KMO A;  4B6D A;  2Y0M A;  1IY5 A;  1FAR A;  1UHA A;  1OYV I;  1TUR A;  2X52 A;  2V53 A;  5HQ8 A;  1PTQ A;  1WTJ A;  1Q9B A;  3TJQ A;  3R5D A;  3TO9 A;  4OVO A;  2NU1 I;  4SGB I;  2QQD A;  1SGD I;  3TOA A;  2L7X A;  2M5X A;  4JCV E;  3TO7 A;  1WKX A;  2W0T A;  2VRW B;  2WCY A;  2GKV A;  1DS2 I;  2KCX A;  1N13 A;  1XX6 A;  5FUV A;  4UXJ A;  1Z7K B;  1AN1 I;  1UVF A;  1TIH A;  3R5A A;  3TOB A;  2GVI A;  2DIP A;  2GKT I;  3QWP A;  7WGA A;  2KMP A;  3VDU A;  2GIV A;  5E3P A;  1Y8F A;  2BUS A;  2ROW A;  5FUW A;  1R0R I;  5EX0 A;  5FUX A;  1OMT A;  2JXD A;  3QAH A;  3UOE A;  2QQE A;  2E5R A;  3UFF A;  3MEK A;  2OD1 A;  3UEY A;  2KMR A;  1VDD A; 
#chains in the Genus database with same CATH homology
 2X52 A;  2DKV A;  4AML A;  1Q9B A;  4MPI A;  9WGA A;  1HEV A;  1ULM A;  1K7U A;  2LB7 A;  1WKX A;  1P9Z A;  2UVO A;  2WGC A;  4WP4 A;  1K7T A;  2X3T A;  1WGT A;  1ULN A;  1ULK A;  1WGC A;  7WGA A;  1K7V A;  2CWG A;  1UHA A;  1P9G A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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