1SGDI

Asp 18 variant of turkey ovomucoid inhibitor third domain complexed with streptomyces griseus proteinase b at ph 6.5
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
51
structure length
51
Chain Sequence
VDCSEYPKPACTDEYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/hydrolase inhibitor
molecule keywords Streptogrisin B
publication title Recruitment of a Buried K+ Ion to Stabilize the Negative Charge of Ionized P1 in the Hydrophobic Pocket: Crystal Structures of Glu18, Gln18, Asp18 and Asn18 Variants of Turkey Ovomucoid Inhibitor Third Domain Complexed with Streptomyces griseus Protease B at Various pH's
rcsb
source organism Meleagris gallopavo
total genus 13
structure length 51
sequence length 51
ec nomenclature
pdb deposition date 1999-03-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
I PF00050 Kazal_1 Kazal-type serine protease inhibitor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.30 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 1sgdI00
1Y1BA 2OVOA 1HJAI 2P6AC 2QQCA 1OVOA 1TUSA 1M8CA 4GI3C 2QQDA 2XRCA 1MT1A 1CE3A 1HDLA 3HH2C 1LR7A 2GKRI 1PPFI 2WCYA 3SGBI 1TGSI 1CHOI 3B4VC 2V53A 1R0RI 2JYYA 2B0UC 1SGPI 2F3CI 2KMPA 1LR9A 1TURA 1OMTA 1BUSA 3QTLD 3OVOA 1UUCA 2NU1I 1KMAA 1LR8A 2ERWA 1TBQR 1TIHA 2JZMA 2NU0I 1AN1I 2KMOA 1Y1CA 2N17A 2N52A 3SEKC 2SGDI 1SGEI 4SGBI 1SGRI 2M5XA 1Z7KB 2N71A 1FYBA 2GKTI 2SGFI 1N13A 1PJUA 1SGDI 2NU3I 2ARPF 1DS3I 2NU4I 3SGQI 1OYVI 1YU6C 1SGNI 2GKVA 2NU2I 2SGEI 2KCXA 1UVGA 5DAEA 1DS2I 1UVFA 2KMRA 4OVOA 1IY5A 1PCEA 1SGYI 1IY6A 1YTPA 1M8BA 1CGII 1NUBA 1CT2I 2SGPI 4HGUA 1BMOA 1CSOI 1CT0I 1CT4I 3TJQA 2BUSA 1SGQI 1TBRR 2SGQI 2KMQA 1HPTA 2LEOA 2JXDA 5JHWC 1H0ZA 1IW4A 1CGJI 1OMUA
chains in the Genus database with same CATH superfamily
2DB6A 2N1AB 3OXLA 2OU2A 5HQ8A 3RU0A 2ROWA 1Y1BA 2OVOA 1HJAI 2P6AC 2QQCA 1OVOA 1TUSA 1M8CA 4GI3C 2QQDA 2XRCA 1MT1A 5E3QA 1ULMA 2Y0MA 1FARA 1W3SA 1MJ9A 2LB7A 3UOEA 2PQ8A 1CE3A 5J8CA 1U5KA 2RIJA 5FUXA 1Z2IA 3R5AA 1HDLA 5E3RA 3HH2C 2UVOA 1WTJA 3E2IA 2B8TA 1KBFA 1HEVA 2ENNA 1Y8FA 1LR7A 2GKRI 2CWGA 1TBOA 1XBTA 1PPFI 2V1CA 2WCYA 2E73A 1X4SA 3VDUA 3UFFA 3SGBI 3GOXA 1TGSI 1CHOI 4E1RA 3B4VC 2V53A 4MPIA 5J8FA 2ELIA 7WGAA 1R0RI 2JYYA 2ORVA 2B0UC 1SGPI 1K7VA 2GVIA 2F3CI 2KMPA 1LR9A 1RFHA 1W4RA 3D00A 3E59A 2WGCA 3R5CA 3UGIA 1PTQA 1TURA 1OMTA 1BUSA 2ORWA 1V1HA 2DKVA 4DNCA 1WKXA 3QTLD 5EX0A 5CCLA 4UXIA 2X52A 3QAHA 2LUYA 3OVOA 3CXLA 1UUCA 3R5BA 4AMLA 1K7UA 1WGTA 3R5DA 2NU1I 1KMAA 4A24A 5FUWA 1LR8A 2ERWA 1TBQR 2J87A 1TIHA 1R79A 2JZMA 2NU0I 1TOTA 2FNFX 1AN1I 2KMOA 1Y1CA 2N17A 1UHAA 2N52A 2SGDI 1SGEI 3FSYA 4JCVE 4UXJA 4WP4A 3TO9A 3VE5A 2JW6A 2GIVA 2OZUA 4SGBI 1SGRI 3UEYA 4UXHA 2M5XA 1KBEA 2CWFA 1Z7KB 5FUYA 3TO7A 2N71A 2E5RA 3TO6A 3OXFA 4B6DA 4E1PA 1FYBA 1FY7A 2GKTI 2OD1A 2W0TA 2RC4A 2VRWB 1ULKA 2SGFI 3KY9A 1N13A 1VDDA 2YQPA 2L7XA 1PJUA 1SGDI 1NXUA 2NU3I 3FSXA 2CJSC 3PDNA 4L9MA 2ARPF 3UGDA 1DS3I 2NU4I 5HI7A 1S20A 2DIPA 3QWPA 3SGQI 1OYVI 3VDPA 9WGAA 1YU6C 5FUVA 3UGLA 1SGNI 3FC3A 2GKVA 5CCMA 2L8EA 3SEKC 3OL0A 2NU2I 2SGEI 2ODDA 1PTRA 3OXGA 1TBNA 2KCXA 2YUUA 1P9ZA 1UVGA 5DAEA 5EX3A 2UZ3A 1DS2I 1UVFA 2ENZA 2KMRA 2WVJA 4OVOA 1IY5A 1PCEA 1SGYI 1IY6A 1YTPA 1M8BA 1X74A 1CGII 1MJAA 2V1CC 1NUBA 1CT2I 2JA1A 2SGPI 1Q9BA 3BJIA 4HGUA 1BMOA 1CSOI 1CT0I 1CT4I 1MJBA 3TJQA 1FAQA 2BUSA 1WGCA 1SGQI 5E3PA 1P9GA 2X3TA 1TBRR 3UEJA 2SGQI 2J9RA 2K9HA 2QPOA 2KMQA 1HPTA 2LEOA 1XX6A 2JXDA 5JHWC 1H0ZA 2QQEA 1XA6A 1V1IA 2A20A 1IW4A 1CGJI 1ULNA 1OMUA 1K7TA 2CWHA 3TOAA 3TOBA 2QQ0A 3MEKA 4FKDA
chains in the Genus database with same CATH topology
2DB6A 2N1AB 3OXLA 5HQ8A 3RU0A 2ROWA 1Y1BA 2OVOA 1HJAI 2P6AC 2QQCA 1OVOA 1TUSA 1M8CA 4GI3C 2QQDA 2XRCA 1MT1A 1FARA 1W3SA 1CE3A 1U5KA 5FUXA 1HDLA 3HH2C 3E2IA 2B8TA 1KBFA 2ENNA 1Y8FA 1LR7A 2GKRI 1TBOA 1XBTA 1PPFI 2V1CA 2WCYA 2E73A 1X4SA 3VDUA 3UFFA 3SGBI 3GOXA 1TGSI 1CHOI 4E1RA 3B4VC 2V53A 2ELIA 1R0RI 2JYYA 2ORVA 2B0UC 1SGPI 2GVIA 2F3CI 2KMPA 1LR9A 1RFHA 1W4RA 3D00A 3E59A 3UGIA 1PTQA 1TURA 1OMTA 1BUSA 2ORWA 1V1HA 3QTLD 5EX0A 5CCLA 4UXIA 2LUYA 3OVOA 3CXLA 1UUCA 2NU1I 1KMAA 4A24A 5FUWA 1LR8A 2ERWA 1TBQR 2J87A 1TIHA 1R79A 2JZMA 2NU0I 1TOTA 2FNFX 1AN1I 2KMOA 1Y1CA 2N17A 2N52A 3MEKA 2SGDI 1SGEI 4JCVE 4UXJA 3SEKC 3VE5A 2JW6A 4SGBI 1SGRI 3UEYA 4UXHA 2M5XA 1KBEA 4B6DA 1Z7KB 5FUYA 2N71A 2E5RA 3OXFA 4E1PA 1FYBA 2GKTI 2OD1A 2W0TA 2VRWB 2SGFI 3KY9A 1N13A 1VDDA 2YQPA 2L7XA 1PJUA 1SGDI 2NU3I 3PDNA 2CJSC 4L9MA 3UGDA 2ARPF 1DS3I 2NU4I 5HI7A 2DIPA 3QWPA 3SGQI 1OYVI 3VDPA 1YU6C 5FUVA 3UGLA 1SGNI 3FC3A 2GKVA 5CCMA 2L8EA 3OL0A 2NU2I 2SGEI 2ODDA 1PTRA 3OXGA 1TBNA 2KCXA 2YUUA 1UVGA 5DAEA 5EX3A 2UZ3A 1DS2I 1UVFA 2ENZA 2KMRA 2WVJA 4OVOA 1IY5A 1PCEA 1SGYI 1IY6A 1YTPA 1M8BA 1X74A 1CGII 2V1CC 1NUBA 1CT2I 2JA1A 2SGPI 4HGUA 3BJIA 1BMOA 1CSOI 1CT0I 1CT4I 3TJQA 1FAQA 2BUSA 1SGQI 1TBRR 3UEJA 2SGQI 2J9RA 2K9HA 2QPOA 2KMQA 1HPTA 2LEOA 1XX6A 2JXDA 5JHWC 1H0ZA 2QQEA 1XA6A 1V1IA 2A20A 1IW4A 1CGJI 1OMUA 2QQ0A 4FKDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Y1B A;  2OVO A;  1HJA I;  2P6A C;  2QQC A;  1OVO A;  1TUS A;  1M8C A;  4GI3 C;  2QQD A;  2XRC A;  1MT1 A;  1CE3 A;  1HDL A;  3HH2 C;  1LR7 A;  2GKR I;  1PPF I;  2WCY A;  3SGB I;  1TGS I;  1CHO I;  3B4V C;  2V53 A;  1R0R I;  2JYY A;  2B0U C;  1SGP I;  2F3C I;  2KMP A;  1LR9 A;  1TUR A;  1OMT A;  1BUS A;  3QTL D;  3OVO A;  1UUC A;  2NU1 I;  1KMA A;  1LR8 A;  2ERW A;  1TBQ R;  1TIH A;  2JZM A;  2NU0 I;  1AN1 I;  2KMO A;  1Y1C A;  2N17 A;  2N52 A;  3SEK C;  2SGD I;  1SGE I;  4SGB I;  1SGR I;  2M5X A;  1Z7K B;  2N71 A;  1FYB A;  2GKT I;  2SGF I;  1N13 A;  1PJU A;  1SGD I;  2NU3 I;  2ARP F;  1DS3 I;  2NU4 I;  3SGQ I;  1OYV I;  1YU6 C;  1SGN I;  2GKV A;  2NU2 I;  2SGE I;  2KCX A;  1UVG A;  5DAE A;  1DS2 I;  1UVF A;  2KMR A;  4OVO A;  1IY5 A;  1PCE A;  1SGY I;  1IY6 A;  1YTP A;  1M8B A;  1CGI I;  1NUB A;  1CT2 I;  2SGP I;  4HGU A;  1BMO A;  1CSO I;  1CT0 I;  1CT4 I;  3TJQ A;  2BUS A;  1SGQ I;  1TBR R;  2SGQ I;  2KMQ A;  1HPT A;  2LEO A;  2JXD A;  5JHW C;  1H0Z A;  1IW4 A;  1CGJ I;  1OMU A; 
#chains in the Genus database with same CATH topology
 2DB6 A;  2N1A B;  3OXL A;  2OU2 A;  5HQ8 A;  3RU0 A;  2ROW A;  1Y1B A;  2OVO A;  1HJA I;  2P6A C;  2QQC A;  1OVO A;  1TUS A;  1M8C A;  4GI3 C;  2QQD A;  2XRC A;  1MT1 A;  5E3Q A;  1ULM A;  2Y0M A;  1FAR A;  1W3S A;  1MJ9 A;  2LB7 A;  3UOE A;  2PQ8 A;  1CE3 A;  5J8C A;  1U5K A;  2RIJ A;  5FUX A;  1Z2I A;  3R5A A;  1HDL A;  5E3R A;  3HH2 C;  2UVO A;  1WTJ A;  3E2I A;  2B8T A;  1KBF A;  1HEV A;  2ENN A;  1Y8F A;  1LR7 A;  2GKR I;  2CWG A;  1TBO A;  1XBT A;  1PPF I;  2V1C A;  2WCY A;  2E73 A;  1X4S A;  3VDU A;  3UFF A;  3SGB I;  3GOX A;  1TGS I;  1CHO I;  4E1R A;  3B4V C;  2V53 A;  4MPI A;  5J8F A;  2ELI A;  7WGA A;  1R0R I;  2JYY A;  2ORV A;  2B0U C;  1SGP I;  1K7V A;  2GVI A;  2F3C I;  2KMP A;  1LR9 A;  1RFH A;  1W4R A;  3D00 A;  3E59 A;  2WGC A;  3R5C A;  3UGI A;  1PTQ A;  1TUR A;  1OMT A;  1BUS A;  2ORW A;  1V1H A;  2DKV A;  4DNC A;  1WKX A;  3QTL D;  5EX0 A;  5CCL A;  4UXI A;  2X52 A;  3QAH A;  2LUY A;  3OVO A;  3CXL A;  1UUC A;  3R5B A;  4AML A;  1K7U A;  1WGT A;  3R5D A;  2NU1 I;  1KMA A;  4A24 A;  5FUW A;  1LR8 A;  2ERW A;  1TBQ R;  2J87 A;  1TIH A;  1R79 A;  2JZM A;  2NU0 I;  1TOT A;  2FNF X;  1AN1 I;  2KMO A;  1Y1C A;  2N17 A;  1UHA A;  2N52 A;  2SGD I;  1SGE I;  3FSY A;  4JCV E;  4UXJ A;  4WP4 A;  3TO9 A;  3VE5 A;  2JW6 A;  2GIV A;  2OZU A;  4SGB I;  1SGR I;  3UEY A;  4UXH A;  2M5X A;  1KBE A;  2CWF A;  1Z7K B;  5FUY A;  3TO7 A;  2N71 A;  2E5R A;  3TO6 A;  3OXF A;  4B6D A;  4E1P A;  1FYB A;  1FY7 A;  2GKT I;  2OD1 A;  2W0T A;  2RC4 A;  2VRW B;  1ULK A;  2SGF I;  3KY9 A;  1N13 A;  1VDD A;  2YQP A;  2L7X A;  1PJU A;  1SGD I;  1NXU A;  2NU3 I;  3FSX A;  2CJS C;  3PDN A;  4L9M A;  2ARP F;  3UGD A;  1DS3 I;  2NU4 I;  5HI7 A;  1S20 A;  2DIP A;  3QWP A;  3SGQ I;  1OYV I;  3VDP A;  9WGA A;  1YU6 C;  5FUV A;  3UGL A;  1SGN I;  3FC3 A;  2GKV A;  5CCM A;  2L8E A;  3SEK C;  3OL0 A;  2NU2 I;  2SGE I;  2ODD A;  1PTR A;  3OXG A;  1TBN A;  2KCX A;  2YUU A;  1P9Z A;  1UVG A;  5DAE A;  5EX3 A;  2UZ3 A;  1DS2 I;  1UVF A;  2ENZ A;  2KMR A;  2WVJ A;  4OVO A;  1IY5 A;  1PCE A;  1SGY I;  1IY6 A;  1YTP A;  1M8B A;  1X74 A;  1CGI I;  1MJA A;  2V1C C;  1NUB A;  1CT2 I;  2JA1 A;  2SGP I;  1Q9B A;  3BJI A;  4HGU A;  1BMO A;  1CSO I;  1CT0 I;  1CT4 I;  1MJB A;  3TJQ A;  1FAQ A;  2BUS A;  1WGC A;  1SGQ I;  5E3P A;  1P9G A;  2X3T A;  1TBR R;  3UEJ A;  2SGQ I;  2J9R A;  2K9H A;  2QPO A;  2KMQ A;  1HPT A;  2LEO A;  1XX6 A;  2JXD A;  5JHW C;  1H0Z A;  2QQE A;  1XA6 A;  1V1I A;  2A20 A;  1IW4 A;  1CGJ I;  1ULN A;  1OMU A;  1K7T A;  2CWH A;  3TOA A;  3TOB A;  2QQ0 A;  3MEK A;  4FKD A; 
#chains in the Genus database with same CATH homology
 2DB6 A;  2N1A B;  3OXL A;  5HQ8 A;  3RU0 A;  2ROW A;  1Y1B A;  2OVO A;  1HJA I;  2P6A C;  2QQC A;  1OVO A;  1TUS A;  1M8C A;  4GI3 C;  2QQD A;  2XRC A;  1MT1 A;  1FAR A;  1W3S A;  1CE3 A;  1U5K A;  5FUX A;  1HDL A;  3HH2 C;  3E2I A;  2B8T A;  1KBF A;  2ENN A;  1Y8F A;  1LR7 A;  2GKR I;  1TBO A;  1XBT A;  1PPF I;  2V1C A;  2WCY A;  2E73 A;  1X4S A;  3VDU A;  3UFF A;  3SGB I;  3GOX A;  1TGS I;  1CHO I;  4E1R A;  3B4V C;  2V53 A;  2ELI A;  1R0R I;  2JYY A;  2ORV A;  2B0U C;  1SGP I;  2GVI A;  2F3C I;  2KMP A;  1LR9 A;  1RFH A;  1W4R A;  3D00 A;  3E59 A;  3UGI A;  1PTQ A;  1TUR A;  1OMT A;  1BUS A;  2ORW A;  1V1H A;  3QTL D;  5EX0 A;  5CCL A;  4UXI A;  2LUY A;  3OVO A;  3CXL A;  1UUC A;  2NU1 I;  1KMA A;  4A24 A;  5FUW A;  1LR8 A;  2ERW A;  1TBQ R;  2J87 A;  1TIH A;  1R79 A;  2JZM A;  2NU0 I;  1TOT A;  2FNF X;  1AN1 I;  2KMO A;  1Y1C A;  2N17 A;  2N52 A;  3MEK A;  2SGD I;  1SGE I;  4JCV E;  4UXJ A;  3SEK C;  3VE5 A;  2JW6 A;  4SGB I;  1SGR I;  3UEY A;  4UXH A;  2M5X A;  1KBE A;  4B6D A;  1Z7K B;  5FUY A;  2N71 A;  2E5R A;  3OXF A;  4E1P A;  1FYB A;  2GKT I;  2OD1 A;  2W0T A;  2VRW B;  2SGF I;  3KY9 A;  1N13 A;  1VDD A;  2YQP A;  2L7X A;  1PJU A;  1SGD I;  2NU3 I;  3PDN A;  2CJS C;  4L9M A;  3UGD A;  2ARP F;  1DS3 I;  2NU4 I;  5HI7 A;  2DIP A;  3QWP A;  3SGQ I;  1OYV I;  3VDP A;  1YU6 C;  5FUV A;  3UGL A;  1SGN I;  3FC3 A;  2GKV A;  5CCM A;  2L8E A;  3OL0 A;  2NU2 I;  2SGE I;  2ODD A;  1PTR A;  3OXG A;  1TBN A;  2KCX A;  2YUU A;  1UVG A;  5DAE A;  5EX3 A;  2UZ3 A;  1DS2 I;  1UVF A;  2ENZ A;  2KMR A;  2WVJ A;  4OVO A;  1IY5 A;  1PCE A;  1SGY I;  1IY6 A;  1YTP A;  1M8B A;  1X74 A;  1CGI I;  2V1C C;  1NUB A;  1CT2 I;  2JA1 A;  2SGP I;  4HGU A;  3BJI A;  1BMO A;  1CSO I;  1CT0 I;  1CT4 I;  3TJQ A;  1FAQ A;  2BUS A;  1SGQ I;  1TBR R;  3UEJ A;  2SGQ I;  2J9R A;  2K9H A;  2QPO A;  2KMQ A;  1HPT A;  2LEO A;  1XX6 A;  2JXD A;  5JHW C;  1H0Z A;  2QQE A;  1XA6 A;  1V1I A;  2A20 A;  1IW4 A;  1CGJ I;  1OMU A;  2QQ0 A;  4FKD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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