1SGDI

Asp 18 variant of turkey ovomucoid inhibitor third domain complexed with streptomyces griseus proteinase b at ph 6.5
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
51
structure length
51
Chain Sequence
VDCSEYPKPACTDEYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/hydrolase inhibitor
molecule keywords Streptogrisin B
publication title Recruitment of a Buried K+ Ion to Stabilize the Negative Charge of Ionized P1 in the Hydrophobic Pocket: Crystal Structures of Glu18, Gln18, Asp18 and Asn18 Variants of Turkey Ovomucoid Inhibitor Third Domain Complexed with Streptomyces griseus Protease B at Various pH's
rcsb
source organism Meleagris gallopavo
total genus 13
structure length 51
sequence length 51
ec nomenclature
pdb deposition date 1999-03-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
I PF00050 Kazal_1 Kazal-type serine protease inhibitor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.30 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 1sgdI00
1SGQI 1N13A 1PPFI 1IY6A 1Z7KB 2XRCA 3OVOA 1CGII 2M5XA 1CT4I 1AN1I 1TBRR 1SGNI 1TBQR 1OMUA 2F3CI 3QTLD 1DS2I 4OVOA 1OYVI 2QQCA 1OVOA 1CT0I 1Y1BA 1PCEA 1SGEI 1HJAI 1NUBA 2GKTI 2NU4I 1LR9A 2SGPI 1CT2I 2N17A 2KCXA 1R0RI 1KMAA 1SGDI 2ARPF 2BUSA 1TGSI 1Y1CA 2QQDA 3SGQI 2N52A 4GI3C 2OVOA 1FYBA 5JHWC 3B4VC 2B0UC 1H0ZA 1CHOI 1HPTA 1HDLA 1DS3I 2P6AC 2SGDI 1LR7A 1LR8A 1OMTA 2LEOA 2V53A 3HH2C 2N71A 2SGEI 2ERWA 1BUSA 1CE3A 2SGFI 1M8BA 2JZMA 3TJQA 1SGPI 2JYYA 1YU6C 2KMPA 1SGYI 2KMRA 1UUCA 1BMOA 2GKRI 1IW4A 2NU3I 1UVFA 1TURA 1MT1A 4HGUA 3SGBI 5DAEA 1UVGA 1CSOI 1PJUA 2KMQA 2KMOA 1IY5A 1M8CA 1TIHA 2NU1I 2WCYA 1YTPA 2GKVA 1TUSA 4SGBI 3SEKC 2SGQI 1SGRI 1CGJI 2NU0I 2NU2I 2JXDA
chains in the Genus database with same CATH superfamily
3UGDA 1SGQI 1XA6A 3FSYA 1N13A 2VRWB 1PPFI 2LUYA 1IY6A 7WGAA 2J87A 2ORWA 3VE5A 1W3SA 2E5RA 1FAQA 1K7TA 2DIPA 1Z7KB 1Q9BA 5FUYA 3TOBA 4UXIA 2XRCA 1NXUA 3OVOA 1CGII 2K9HA 2M5XA 2W0TA 1U5KA 2E73A 2X52A 1WTJA 1CT4I 2ENNA 2L7XA 1AN1I 1X74A 2LB7A 2OZUA 3UEYA 1V1IA 1TBRR 1SGNI 1TBQR 1XBTA 1OMUA 1WGCA 1R79A 1UHAA 2JA1A 1X4SA 1WGTA 2F3CI 2ORVA 3QTLD 1DS2I 3OXLA 2YUUA 2OU2A 1OYVI 2QQCA 4OVOA 2UVOA 5HQ8A 5CCLA 1OVOA 1CT0I 1Y1BA 1P9GA 1PCEA 1RFHA 1SGEI 3CXLA 1HJAI 1NUBA 1XX6A 2GKTI 3R5DA 2NU4I 2N1AB 2FNFX 1LR9A 2GIVA 4FKDA 9WGAA 2RIJA 1V1HA 5E3PA 2SGPI 1S20A 3BJIA 1CT2I 2N17A 3OXFA 2KCXA 1R0RI 3TO9A 1KMAA 2YQPA 2J9RA 3QAHA 5E3QA 1SGDI 3TOAA 2ARPF 2BUSA 2CWGA 1TGSI 1Y1CA 2QQDA 3E59A 2UZ3A 5FUVA 3TO7A 2PQ8A 3MEKA 3D00A 3UGIA 3UFFA 4B6DA 3FSXA 4L9MA 3SGQI 1W4RA 3VDPA 2N52A 1P9ZA 4GI3C 2OVOA 3UOEA 2RC4A 3PDNA 4MPIA 1FY7A 3GOXA 1FYBA 5JHWC 3B4VC 2WGCA 2B0UC 1H0ZA 3E2IA 1CHOI 4DNCA 1HPTA 1HDLA 2JW6A 5J8CA 2GVIA 1DS3I 2P6AC 2Y0MA 2SGDI 1LR7A 5E3RA 1LR8A 1OMTA 1PTQA 2LEOA 2V53A 3HH2C 2N71A 1Y8FA 3RU0A 2SGEI 5J8FA 5FUXA 2ERWA 1BUSA 2CJSC 2OD1A 2A20A 1TOTA 3TO6A 1CE3A 2DB6A 2SGFI 3UGLA 1M8BA 2JZMA 2X3TA 3TJQA 4AMLA 5EX0A 1SGPI 3OXGA 2JYYA 1YU6C 2KMPA 5HI7A 5CCMA 2CWFA 4A24A 1SGYI 3R5CA 2KMRA 1MJ9A 2ROWA 1ULKA 3VDUA 1VDDA 1UUCA 2QPOA 1BMOA 2GKRI 1IW4A 2V1CA 1ULMA 2QQEA 2NU3I 2V1CC 2ENZA 3R5BA 4UXHA 3OL0A 1UVFA 1TURA 1WKXA 2ODDA 1MJAA 3QWPA 3R5AA 1MT1A 2L8EA 1TBNA 2CWHA 4HGUA 3SGBI 5DAEA 1K7UA 2WVJA 4UXJA 1UVGA 1Z2IA 3FC3A 2DKVA 1CSOI 1PJUA 2KMQA 1HEVA 2KMOA 4E1PA 1TBOA 1MJBA 1IY5A 1M8CA 1TIHA 2NU1I 2WCYA 5EX3A 4JCVE 1FARA 2QQ0A 1ULNA 1KBEA 1YTPA 1TUSA 2GKVA 4SGBI 4WP4A 3SEKC 1K7VA 2SGQI 5FUWA 3UEJA 3KY9A 1PTRA 1KBFA 4E1RA 2B8TA 1SGRI 1CGJI 2ELIA 2NU0I 2NU2I 2JXDA
chains in the Genus database with same CATH topology
3UGDA 1SGQI 1XA6A 1N13A 2VRWB 1PPFI 2LUYA 1IY6A 2J87A 2ORWA 3VE5A 1W3SA 2E5RA 1FAQA 2DIPA 1Z7KB 5FUYA 4UXIA 2XRCA 3OVOA 1CGII 2K9HA 2M5XA 2W0TA 1U5KA 2E73A 1CT4I 2ENNA 2L7XA 1AN1I 1X74A 3UEYA 1TBRR 1V1IA 1SGNI 1TBQR 1XBTA 1OMUA 1R79A 2JA1A 1X4SA 2F3CI 2ORVA 3QTLD 1DS2I 3OXLA 2YUUA 4OVOA 1OYVI 2QQCA 5HQ8A 5CCLA 1OVOA 1CT0I 1Y1BA 1PCEA 1RFHA 1SGEI 3CXLA 1HJAI 1NUBA 1XX6A 2GKTI 2NU4I 2N1AB 2FNFX 1LR9A 4FKDA 1V1HA 2SGPI 3BJIA 1CT2I 2N17A 3OXFA 2KCXA 1R0RI 1KMAA 2YQPA 2J9RA 1SGDI 2ARPF 2BUSA 1TGSI 1Y1CA 2QQDA 3E59A 2UZ3A 5FUVA 3MEKA 3D00A 3UGIA 3UFFA 4B6DA 4L9MA 3SGQI 1W4RA 3VDPA 2N52A 4GI3C 2OVOA 3PDNA 3GOXA 1FYBA 5JHWC 3B4VC 2B0UC 1H0ZA 3E2IA 1CHOI 1HPTA 1HDLA 2JW6A 2GVIA 1DS3I 2P6AC 2SGDI 1LR7A 1LR8A 1OMTA 1PTQA 2LEOA 2V53A 3HH2C 2N71A 1Y8FA 3RU0A 2SGEI 5FUXA 2ERWA 1BUSA 2CJSC 2OD1A 2A20A 1TOTA 1CE3A 2DB6A 2SGFI 3UGLA 1M8BA 2JZMA 3TJQA 5EX0A 1SGPI 3OXGA 2JYYA 1YU6C 2KMPA 5HI7A 5CCMA 4A24A 1SGYI 2KMRA 2ROWA 3VDUA 1VDDA 1UUCA 2QPOA 1BMOA 2GKRI 1IW4A 2V1CA 2QQEA 4UXHA 2NU3I 2V1CC 2ENZA 3OL0A 1UVFA 1TURA 2ODDA 3QWPA 1MT1A 2L8EA 1TBNA 4HGUA 3SGBI 5DAEA 2WVJA 4UXJA 1UVGA 3FC3A 1CSOI 1PJUA 2KMQA 2KMOA 4E1PA 1TBOA 1IY5A 1M8CA 1TIHA 2NU1I 2WCYA 5EX3A 4JCVE 1FARA 2QQ0A 1YTPA 1KBEA 2GKVA 1TUSA 4SGBI 3SEKC 2SGQI 5FUWA 3UEJA 3KY9A 1PTRA 1KBFA 4E1RA 2B8TA 1SGRI 1CGJI 2ELIA 2NU0I 2NU2I 2JXDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1SGQ I;  1N13 A;  1PPF I;  1IY6 A;  1Z7K B;  2XRC A;  3OVO A;  1CGI I;  2M5X A;  1CT4 I;  1AN1 I;  1TBR R;  1SGN I;  1TBQ R;  1OMU A;  2F3C I;  3QTL D;  1DS2 I;  4OVO A;  1OYV I;  2QQC A;  1OVO A;  1CT0 I;  1Y1B A;  1PCE A;  1SGE I;  1HJA I;  1NUB A;  2GKT I;  2NU4 I;  1LR9 A;  2SGP I;  1CT2 I;  2N17 A;  2KCX A;  1R0R I;  1KMA A;  1SGD I;  2ARP F;  2BUS A;  1TGS I;  1Y1C A;  2QQD A;  3SGQ I;  2N52 A;  4GI3 C;  2OVO A;  1FYB A;  5JHW C;  3B4V C;  2B0U C;  1H0Z A;  1CHO I;  1HPT A;  1HDL A;  1DS3 I;  2P6A C;  2SGD I;  1LR7 A;  1LR8 A;  1OMT A;  2LEO A;  2V53 A;  3HH2 C;  2N71 A;  2SGE I;  2ERW A;  1BUS A;  1CE3 A;  2SGF I;  1M8B A;  2JZM A;  3TJQ A;  1SGP I;  2JYY A;  1YU6 C;  2KMP A;  1SGY I;  2KMR A;  1UUC A;  1BMO A;  2GKR I;  1IW4 A;  2NU3 I;  1UVF A;  1TUR A;  1MT1 A;  4HGU A;  3SGB I;  5DAE A;  1UVG A;  1CSO I;  1PJU A;  2KMQ A;  2KMO A;  1IY5 A;  1M8C A;  1TIH A;  2NU1 I;  2WCY A;  1YTP A;  2GKV A;  1TUS A;  4SGB I;  3SEK C;  2SGQ I;  1SGR I;  1CGJ I;  2NU0 I;  2NU2 I;  2JXD A; 
#chains in the Genus database with same CATH topology
 3UGD A;  1SGQ I;  1XA6 A;  3FSY A;  1N13 A;  2VRW B;  1PPF I;  2LUY A;  1IY6 A;  7WGA A;  2J87 A;  2ORW A;  3VE5 A;  1W3S A;  2E5R A;  1FAQ A;  1K7T A;  2DIP A;  1Z7K B;  1Q9B A;  5FUY A;  3TOB A;  4UXI A;  2XRC A;  1NXU A;  3OVO A;  1CGI I;  2K9H A;  2M5X A;  2W0T A;  1U5K A;  2E73 A;  2X52 A;  1WTJ A;  1CT4 I;  2ENN A;  2L7X A;  1AN1 I;  1X74 A;  2LB7 A;  2OZU A;  3UEY A;  1V1I A;  1TBR R;  1SGN I;  1TBQ R;  1XBT A;  1OMU A;  1WGC A;  1R79 A;  1UHA A;  2JA1 A;  1X4S A;  1WGT A;  2F3C I;  2ORV A;  3QTL D;  1DS2 I;  3OXL A;  2YUU A;  2OU2 A;  1OYV I;  2QQC A;  4OVO A;  2UVO A;  5HQ8 A;  5CCL A;  1OVO A;  1CT0 I;  1Y1B A;  1P9G A;  1PCE A;  1RFH A;  1SGE I;  3CXL A;  1HJA I;  1NUB A;  1XX6 A;  2GKT I;  3R5D A;  2NU4 I;  2N1A B;  2FNF X;  1LR9 A;  2GIV A;  4FKD A;  9WGA A;  2RIJ A;  1V1H A;  5E3P A;  2SGP I;  1S20 A;  3BJI A;  1CT2 I;  2N17 A;  3OXF A;  2KCX A;  1R0R I;  3TO9 A;  1KMA A;  2YQP A;  2J9R A;  3QAH A;  5E3Q A;  1SGD I;  3TOA A;  2ARP F;  2BUS A;  2CWG A;  1TGS I;  1Y1C A;  2QQD A;  3E59 A;  2UZ3 A;  5FUV A;  3TO7 A;  2PQ8 A;  3MEK A;  3D00 A;  3UGI A;  3UFF A;  4B6D A;  3FSX A;  4L9M A;  3SGQ I;  1W4R A;  3VDP A;  2N52 A;  1P9Z A;  4GI3 C;  2OVO A;  3UOE A;  2RC4 A;  3PDN A;  4MPI A;  1FY7 A;  3GOX A;  1FYB A;  5JHW C;  3B4V C;  2WGC A;  2B0U C;  1H0Z A;  3E2I A;  1CHO I;  4DNC A;  1HPT A;  1HDL A;  2JW6 A;  5J8C A;  2GVI A;  1DS3 I;  2P6A C;  2Y0M A;  2SGD I;  1LR7 A;  5E3R A;  1LR8 A;  1OMT A;  1PTQ A;  2LEO A;  2V53 A;  3HH2 C;  2N71 A;  1Y8F A;  3RU0 A;  2SGE I;  5J8F A;  5FUX A;  2ERW A;  1BUS A;  2CJS C;  2OD1 A;  2A20 A;  1TOT A;  3TO6 A;  1CE3 A;  2DB6 A;  2SGF I;  3UGL A;  1M8B A;  2JZM A;  2X3T A;  3TJQ A;  4AML A;  5EX0 A;  1SGP I;  3OXG A;  2JYY A;  1YU6 C;  2KMP A;  5HI7 A;  5CCM A;  2CWF A;  4A24 A;  1SGY I;  3R5C A;  2KMR A;  1MJ9 A;  2ROW A;  1ULK A;  3VDU A;  1VDD A;  1UUC A;  2QPO A;  1BMO A;  2GKR I;  1IW4 A;  2V1C A;  1ULM A;  2QQE A;  2NU3 I;  2V1C C;  2ENZ A;  3R5B A;  4UXH A;  3OL0 A;  1UVF A;  1TUR A;  1WKX A;  2ODD A;  1MJA A;  3QWP A;  3R5A A;  1MT1 A;  2L8E A;  1TBN A;  2CWH A;  4HGU A;  3SGB I;  5DAE A;  1K7U A;  2WVJ A;  4UXJ A;  1UVG A;  1Z2I A;  3FC3 A;  2DKV A;  1CSO I;  1PJU A;  2KMQ A;  1HEV A;  2KMO A;  4E1P A;  1TBO A;  1MJB A;  1IY5 A;  1M8C A;  1TIH A;  2NU1 I;  2WCY A;  5EX3 A;  4JCV E;  1FAR A;  2QQ0 A;  1ULN A;  1KBE A;  1YTP A;  1TUS A;  2GKV A;  4SGB I;  4WP4 A;  3SEK C;  1K7V A;  2SGQ I;  5FUW A;  3UEJ A;  3KY9 A;  1PTR A;  1KBF A;  4E1R A;  2B8T A;  1SGR I;  1CGJ I;  2ELI A;  2NU0 I;  2NU2 I;  2JXD A; 
#chains in the Genus database with same CATH homology
 3UGD A;  1SGQ I;  1XA6 A;  1N13 A;  2VRW B;  1PPF I;  2LUY A;  1IY6 A;  2J87 A;  2ORW A;  3VE5 A;  1W3S A;  2E5R A;  1FAQ A;  2DIP A;  1Z7K B;  5FUY A;  4UXI A;  2XRC A;  3OVO A;  1CGI I;  2K9H A;  2M5X A;  2W0T A;  1U5K A;  2E73 A;  1CT4 I;  2ENN A;  2L7X A;  1AN1 I;  1X74 A;  3UEY A;  1TBR R;  1V1I A;  1SGN I;  1TBQ R;  1XBT A;  1OMU A;  1R79 A;  2JA1 A;  1X4S A;  2F3C I;  2ORV A;  3QTL D;  1DS2 I;  3OXL A;  2YUU A;  4OVO A;  1OYV I;  2QQC A;  5HQ8 A;  5CCL A;  1OVO A;  1CT0 I;  1Y1B A;  1PCE A;  1RFH A;  1SGE I;  3CXL A;  1HJA I;  1NUB A;  1XX6 A;  2GKT I;  2NU4 I;  2N1A B;  2FNF X;  1LR9 A;  4FKD A;  1V1H A;  2SGP I;  3BJI A;  1CT2 I;  2N17 A;  3OXF A;  2KCX A;  1R0R I;  1KMA A;  2YQP A;  2J9R A;  1SGD I;  2ARP F;  2BUS A;  1TGS I;  1Y1C A;  2QQD A;  3E59 A;  2UZ3 A;  5FUV A;  3MEK A;  3D00 A;  3UGI A;  3UFF A;  4B6D A;  4L9M A;  3SGQ I;  1W4R A;  3VDP A;  2N52 A;  4GI3 C;  2OVO A;  3PDN A;  3GOX A;  1FYB A;  5JHW C;  3B4V C;  2B0U C;  1H0Z A;  3E2I A;  1CHO I;  1HPT A;  1HDL A;  2JW6 A;  2GVI A;  1DS3 I;  2P6A C;  2SGD I;  1LR7 A;  1LR8 A;  1OMT A;  1PTQ A;  2LEO A;  2V53 A;  3HH2 C;  2N71 A;  1Y8F A;  3RU0 A;  2SGE I;  5FUX A;  2ERW A;  1BUS A;  2CJS C;  2OD1 A;  2A20 A;  1TOT A;  1CE3 A;  2DB6 A;  2SGF I;  3UGL A;  1M8B A;  2JZM A;  3TJQ A;  5EX0 A;  1SGP I;  3OXG A;  2JYY A;  1YU6 C;  2KMP A;  5HI7 A;  5CCM A;  4A24 A;  1SGY I;  2KMR A;  2ROW A;  3VDU A;  1VDD A;  1UUC A;  2QPO A;  1BMO A;  2GKR I;  1IW4 A;  2V1C A;  2QQE A;  4UXH A;  2NU3 I;  2V1C C;  2ENZ A;  3OL0 A;  1UVF A;  1TUR A;  2ODD A;  3QWP A;  1MT1 A;  2L8E A;  1TBN A;  4HGU A;  3SGB I;  5DAE A;  2WVJ A;  4UXJ A;  1UVG A;  3FC3 A;  1CSO I;  1PJU A;  2KMQ A;  2KMO A;  4E1P A;  1TBO A;  1IY5 A;  1M8C A;  1TIH A;  2NU1 I;  2WCY A;  5EX3 A;  4JCV E;  1FAR A;  2QQ0 A;  1YTP A;  1KBE A;  2GKV A;  1TUS A;  4SGB I;  3SEK C;  2SGQ I;  5FUW A;  3UEJ A;  3KY9 A;  1PTR A;  1KBF A;  4E1R A;  2B8T A;  1SGR I;  1CGJ I;  2ELI A;  2NU0 I;  2NU2 I;  2JXD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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