1SGDI

Asp 18 variant of turkey ovomucoid inhibitor third domain complexed with streptomyces griseus proteinase b at ph 6.5
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
51
structure length
51
Chain Sequence
b'VDCSEYPKPACTDEYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Streptogrisin B
publication title Recruitment of a Buried K+ Ion to Stabilize the Negative Charge of Ionized P1 in the Hydrophobic Pocket: Crystal Structures of Glu18, Gln18, Asp18 and Asn18 Variants of Turkey Ovomucoid Inhibitor Third Domain Complexed with Streptomyces griseus Protease B at Various pH's
rcsb
source organism Meleagris gallopavo
molecule tags Hydrolase/hydrolase inhibitor
total genus 13
structure length 51
sequence length 51
ec nomenclature
pdb deposition date 1999-03-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
I PF00050 Kazal_1 Kazal-type serine protease inhibitor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.30 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 1sgdI00
3SGQI 2KCXA 1IW4A 1SGNI 2V53A 2B0UC 1SGQI 1CT0I 1R0RI 1UVFA 1OMUA 1LR8A 2M5XA 1CT4I 1SGRI 1OVOA 1KMAA 2GKRI 4OVOA 1CHOI 1AN1I 4HGUA 1FYBA 2KMPA 1TBQR 1HPTA 1SGEI 1CGJI 1PJUA 2GKVA 2N52A 1CT2I 1TBRR 3B4VC 2ERWA 2NU0I 1HDLA 1TUSA 1SGYI 2SGFI 3SGBI 2F3CI 1IY5A 1M8CA 1HJAI 1LR7A 3QTLD 1N13A 2LEOA 1Y1CA 2KMQA 1YTPA 2WCYA 2QQDA 1TURA 2GKTI 1PCEA 1H0ZA 2JZMA 2KMRA 2JXDA 1SGPI 5DAEA 2N17A 1BUSA 1UVGA 1OMTA 2SGDI 1Z7KB 1M8BA 1LR9A 2NU4I 2KMOA 1PPFI 4SGBI 2N71A 1YU6C 2OVOA 1NUBA 2ARPF 5JHWC 2SGQI 1IY6A 1DS2I 2NU2I 1DS3I 2QQCA 2SGEI 2BUSA 1UUCA 1BMOA 1Y1BA 2NU1I 1TIHA 2SGPI 3HH2C 1TGSI 3OVOA 1MT1A 2JYYA 4GI3C 3TJQA 3SEKC 2NU3I 2P6AC 1OYVI 2XRCA 1SGDI 1CGII 1CE3A 1CSOI
chains in the Genus database with same CATH superfamily
3SGQI 2KCXA 1W3SA 1X74A 1IW4A 1K7TA 1SGNI 2J87A 1ULMA 3UGLA 2V53A 1FAQA 1XX6A 4L9MA 2B0UC 3OXGA 1SGQI 1CT0I 5E3PA 1R0RI 1UVFA 1OMUA 2GIVA 2L8EA 5E3RA 3VE5A 1LR8A 1S20A 3UEYA 2DB6A 2M5XA 1CT4I 1SGRI 1X4SA 4FKDA 2Y0MA 5EX0A 1FY7A 1OVOA 1KMAA 3R5CA 2GKRI 1V1IA 4OVOA 4AMLA 1CHOI 1AN1I 3KY9A 4HGUA 1FYBA 2KMPA 1TBQR 1HPTA 1SGEI 5FUXA 1CGJI 1ULNA 2UZ3A 1PJUA 2ENNA 2GKVA 1ULKA 2RIJA 3R5DA 2VRWB 2N52A 1CT2I 2N1AB 1TBRR 1TOTA 2B8TA 3B4VC 2ERWA 1WTJA 2NU0I 1VDDA 3OXFA 2GVIA 3D00A 3FSXA 3QAHA 1HDLA 1TUSA 2E5RA 4A24A 4E1RA 2K9HA 1SGYI 1KBEA 4MPIA 2SGFI 3TO7A 3SGBI 2F3CI 2ENZA 1V1HA 2YUUA 1M8CA 3PDNA 3VDUA 3FC3A 2LUYA 2ORVA 2OU2A 1IY5A 3RU0A 5FUYA 1HJAI 3UGIA 3E2IA 1U5KA 1LR7A 1P9ZA 4UXIA 1Z2IA 5FUWA 1W4RA 2V1CC 3QTLD 3TOBA 2CWFA 1N13A 1RFHA 2LEOA 3UFFA 2QQ0A 1PTRA 1Y1CA 2KMQA 3TOAA 1Q9BA 1MJBA 2WGCA 1K7VA 2W0TA 1HEVA 2V1CA 1XA6A 2ORWA 1YTPA 2WCYA 2QQDA 2X3TA 2X52A 1TURA 3QWPA 5HI7A 9WGAA 3GOXA 2GKTI 1PCEA 1H0ZA 2JZMA 2KMRA 2UVOA 2A20A 2DKVA 2JXDA 2JW6A 2QPOA 1WGCA 3VDPA 1SGPI 1NXUA 5DAEA 3UGDA 3OXLA 2N17A 1XBTA 1BUSA 1UVGA 1OMTA 2SGDI 1Z7KB 1M8BA 2ROWA 2OZUA 1LR9A 2NU4I 5J8FA 2KMOA 1WGTA 2OD1A 1PPFI 3FSYA 4SGBI 5EX3A 2RC4A 1P9GA 2N71A 4B6DA 4WP4A 1YU6C 1MJAA 2LB7A 2OVOA 3OL0A 1NUBA 2L7XA 5E3QA 1TBNA 1FARA 2ODDA 1R79A 5HQ8A 2QQEA 2ARPF 2CJSC 2SGQI 5JHWC 1DS2I 1IY6A 2NU2I 3E59A 1K7UA 2FNFX 1DS3I 1PTQA 1WKXA 2QQCA 2E73A 2SGEI 2BUSA 1UUCA 3TO9A 1Y8FA 3CXLA 4UXJA 3TO6A 3UOEA 4E1PA 1BMOA 1Y1BA 2ELIA 2NU1I 2PQ8A 3MEKA 5CCLA 2J9RA 1TIHA 3R5BA 2SGPI 3HH2C 1TGSI 3OVOA 1KBFA 1TBOA 2WVJA 4JCVE 1MT1A 4UXHA 5CCMA 3UEJA 2CWHA 5FUVA 5J8CA 2JYYA 4DNCA 2DIPA 1MJ9A 4GI3C 3TJQA 3SEKC 2NU3I 2P6AC 7WGAA 1OYVI 2CWGA 2JA1A 2XRCA 1SGDI 2YQPA 1CGII 3R5AA 1UHAA 3BJIA 1CE3A 1CSOI
chains in the Genus database with same CATH topology
3SGQI 2KCXA 1W3SA 1X74A 1IW4A 1SGNI 2J87A 3UGLA 2V53A 1FAQA 1XX6A 4L9MA 2B0UC 3OXGA 1SGQI 1CT0I 1R0RI 1UVFA 1OMUA 2L8EA 3VE5A 1LR8A 3UEYA 2DB6A 2M5XA 1CT4I 1SGRI 1X4SA 4FKDA 5EX0A 1OVOA 1KMAA 2GKRI 1V1IA 4OVOA 1CHOI 1AN1I 3KY9A 4HGUA 1FYBA 2KMPA 1TBQR 1HPTA 1SGEI 5FUXA 1CGJI 2UZ3A 1PJUA 2ENNA 2GKVA 2VRWB 2N52A 1CT2I 2N1AB 1TBRR 1TOTA 2B8TA 3B4VC 2ERWA 3OXFA 2NU0I 1VDDA 2GVIA 3D00A 1HDLA 1TUSA 2E5RA 4A24A 4E1RA 2K9HA 1SGYI 1KBEA 2SGFI 3SGBI 2F3CI 2ENZA 1V1HA 2YUUA 1M8CA 3PDNA 3VDUA 3FC3A 2LUYA 2ORVA 1IY5A 3RU0A 5FUYA 1HJAI 3UGIA 3E2IA 1U5KA 1LR7A 4UXIA 5FUWA 1W4RA 2V1CC 3QTLD 1N13A 1RFHA 2LEOA 3UFFA 2QQ0A 1PTRA 1Y1CA 2KMQA 2W0TA 2V1CA 1XA6A 2ORWA 1YTPA 2WCYA 2QQDA 3QWPA 5HI7A 1TURA 3GOXA 2GKTI 1PCEA 1H0ZA 2JZMA 2KMRA 2A20A 2JXDA 2JW6A 2QPOA 3VDPA 1SGPI 5DAEA 3UGDA 3OXLA 2N17A 1XBTA 1BUSA 1UVGA 1OMTA 2SGDI 1Z7KB 1M8BA 2ROWA 1LR9A 2NU4I 2KMOA 2OD1A 1PPFI 4SGBI 5EX3A 2N71A 4B6DA 1YU6C 2OVOA 3OL0A 1NUBA 2L7XA 1TBNA 1FARA 2ODDA 1R79A 5HQ8A 2QQEA 2ARPF 2CJSC 2SGQI 5JHWC 1DS2I 1IY6A 2NU2I 3E59A 2FNFX 1DS3I 1PTQA 2QQCA 2E73A 2SGEI 2BUSA 1UUCA 1Y8FA 3CXLA 4UXJA 4E1PA 1BMOA 1Y1BA 2ELIA 2NU1I 3MEKA 5CCLA 2J9RA 1TIHA 2SGPI 3HH2C 1TGSI 3OVOA 1KBFA 1TBOA 2WVJA 4JCVE 1MT1A 4UXHA 5CCMA 3UEJA 5FUVA 2JYYA 2DIPA 4GI3C 3TJQA 3SEKC 2NU3I 2P6AC 1OYVI 2JA1A 2XRCA 1SGDI 2YQPA 1CGII 3BJIA 1CE3A 1CSOI
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SGQ I;  2KCX A;  1IW4 A;  1SGN I;  2V53 A;  2B0U C;  1SGQ I;  1CT0 I;  1R0R I;  1UVF A;  1OMU A;  1LR8 A;  2M5X A;  1CT4 I;  1SGR I;  1OVO A;  1KMA A;  2GKR I;  4OVO A;  1CHO I;  1AN1 I;  4HGU A;  1FYB A;  2KMP A;  1TBQ R;  1HPT A;  1SGE I;  1CGJ I;  1PJU A;  2GKV A;  2N52 A;  1CT2 I;  1TBR R;  3B4V C;  2ERW A;  2NU0 I;  1HDL A;  1TUS A;  1SGY I;  2SGF I;  3SGB I;  2F3C I;  1IY5 A;  1M8C A;  1HJA I;  1LR7 A;  3QTL D;  1N13 A;  2LEO A;  1Y1C A;  2KMQ A;  1YTP A;  2WCY A;  2QQD A;  1TUR A;  2GKT I;  1PCE A;  1H0Z A;  2JZM A;  2KMR A;  2JXD A;  1SGP I;  5DAE A;  2N17 A;  1BUS A;  1UVG A;  1OMT A;  2SGD I;  1Z7K B;  1M8B A;  1LR9 A;  2NU4 I;  2KMO A;  1PPF I;  4SGB I;  2N71 A;  1YU6 C;  2OVO A;  1NUB A;  2ARP F;  5JHW C;  2SGQ I;  1IY6 A;  1DS2 I;  2NU2 I;  1DS3 I;  2QQC A;  2SGE I;  2BUS A;  1UUC A;  1BMO A;  1Y1B A;  2NU1 I;  1TIH A;  2SGP I;  3HH2 C;  1TGS I;  3OVO A;  1MT1 A;  2JYY A;  4GI3 C;  3TJQ A;  3SEK C;  2NU3 I;  2P6A C;  1OYV I;  2XRC A;  1SGD I;  1CGI I;  1CE3 A;  1CSO I; 
#chains in the Genus database with same CATH topology
 3SGQ I;  2KCX A;  1W3S A;  1X74 A;  1IW4 A;  1K7T A;  1SGN I;  2J87 A;  1ULM A;  3UGL A;  2V53 A;  1FAQ A;  1XX6 A;  4L9M A;  2B0U C;  3OXG A;  1SGQ I;  1CT0 I;  5E3P A;  1R0R I;  1UVF A;  1OMU A;  2GIV A;  2L8E A;  5E3R A;  3VE5 A;  1LR8 A;  1S20 A;  3UEY A;  2DB6 A;  2M5X A;  1CT4 I;  1SGR I;  1X4S A;  4FKD A;  2Y0M A;  5EX0 A;  1FY7 A;  1OVO A;  1KMA A;  3R5C A;  2GKR I;  1V1I A;  4OVO A;  4AML A;  1CHO I;  1AN1 I;  3KY9 A;  4HGU A;  1FYB A;  2KMP A;  1TBQ R;  1HPT A;  1SGE I;  5FUX A;  1CGJ I;  1ULN A;  2UZ3 A;  1PJU A;  2ENN A;  2GKV A;  1ULK A;  2RIJ A;  3R5D A;  2VRW B;  2N52 A;  1CT2 I;  2N1A B;  1TBR R;  1TOT A;  2B8T A;  3B4V C;  2ERW A;  1WTJ A;  2NU0 I;  1VDD A;  3OXF A;  2GVI A;  3D00 A;  3FSX A;  3QAH A;  1HDL A;  1TUS A;  2E5R A;  4A24 A;  4E1R A;  2K9H A;  1SGY I;  1KBE A;  4MPI A;  2SGF I;  3TO7 A;  3SGB I;  2F3C I;  2ENZ A;  1V1H A;  2YUU A;  1M8C A;  3PDN A;  3VDU A;  3FC3 A;  2LUY A;  2ORV A;  2OU2 A;  1IY5 A;  3RU0 A;  5FUY A;  1HJA I;  3UGI A;  3E2I A;  1U5K A;  1LR7 A;  1P9Z A;  4UXI A;  1Z2I A;  5FUW A;  1W4R A;  2V1C C;  3QTL D;  3TOB A;  2CWF A;  1N13 A;  1RFH A;  2LEO A;  3UFF A;  2QQ0 A;  1PTR A;  1Y1C A;  2KMQ A;  3TOA A;  1Q9B A;  1MJB A;  2WGC A;  1K7V A;  2W0T A;  1HEV A;  2V1C A;  1XA6 A;  2ORW A;  1YTP A;  2WCY A;  2QQD A;  2X3T A;  2X52 A;  1TUR A;  3QWP A;  5HI7 A;  9WGA A;  3GOX A;  2GKT I;  1PCE A;  1H0Z A;  2JZM A;  2KMR A;  2UVO A;  2A20 A;  2DKV A;  2JXD A;  2JW6 A;  2QPO A;  1WGC A;  3VDP A;  1SGP I;  1NXU A;  5DAE A;  3UGD A;  3OXL A;  2N17 A;  1XBT A;  1BUS A;  1UVG A;  1OMT A;  2SGD I;  1Z7K B;  1M8B A;  2ROW A;  2OZU A;  1LR9 A;  2NU4 I;  5J8F A;  2KMO A;  1WGT A;  2OD1 A;  1PPF I;  3FSY A;  4SGB I;  5EX3 A;  2RC4 A;  1P9G A;  2N71 A;  4B6D A;  4WP4 A;  1YU6 C;  1MJA A;  2LB7 A;  2OVO A;  3OL0 A;  1NUB A;  2L7X A;  5E3Q A;  1TBN A;  1FAR A;  2ODD A;  1R79 A;  5HQ8 A;  2QQE A;  2ARP F;  2CJS C;  2SGQ I;  5JHW C;  1DS2 I;  1IY6 A;  2NU2 I;  3E59 A;  1K7U A;  2FNF X;  1DS3 I;  1PTQ A;  1WKX A;  2QQC A;  2E73 A;  2SGE I;  2BUS A;  1UUC A;  3TO9 A;  1Y8F A;  3CXL A;  4UXJ A;  3TO6 A;  3UOE A;  4E1P A;  1BMO A;  1Y1B A;  2ELI A;  2NU1 I;  2PQ8 A;  3MEK A;  5CCL A;  2J9R A;  1TIH A;  3R5B A;  2SGP I;  3HH2 C;  1TGS I;  3OVO A;  1KBF A;  1TBO A;  2WVJ A;  4JCV E;  1MT1 A;  4UXH A;  5CCM A;  3UEJ A;  2CWH A;  5FUV A;  5J8C A;  2JYY A;  4DNC A;  2DIP A;  1MJ9 A;  4GI3 C;  3TJQ A;  3SEK C;  2NU3 I;  2P6A C;  7WGA A;  1OYV I;  2CWG A;  2JA1 A;  2XRC A;  1SGD I;  2YQP A;  1CGI I;  3R5A A;  1UHA A;  3BJI A;  1CE3 A;  1CSO I; 
#chains in the Genus database with same CATH homology
 3SGQ I;  2KCX A;  1W3S A;  1X74 A;  1IW4 A;  1SGN I;  2J87 A;  3UGL A;  2V53 A;  1FAQ A;  1XX6 A;  4L9M A;  2B0U C;  3OXG A;  1SGQ I;  1CT0 I;  1R0R I;  1UVF A;  1OMU A;  2L8E A;  3VE5 A;  1LR8 A;  3UEY A;  2DB6 A;  2M5X A;  1CT4 I;  1SGR I;  1X4S A;  4FKD A;  5EX0 A;  1OVO A;  1KMA A;  2GKR I;  1V1I A;  4OVO A;  1CHO I;  1AN1 I;  3KY9 A;  4HGU A;  1FYB A;  2KMP A;  1TBQ R;  1HPT A;  1SGE I;  5FUX A;  1CGJ I;  2UZ3 A;  1PJU A;  2ENN A;  2GKV A;  2VRW B;  2N52 A;  1CT2 I;  2N1A B;  1TBR R;  1TOT A;  2B8T A;  3B4V C;  2ERW A;  3OXF A;  2NU0 I;  1VDD A;  2GVI A;  3D00 A;  1HDL A;  1TUS A;  2E5R A;  4A24 A;  4E1R A;  2K9H A;  1SGY I;  1KBE A;  2SGF I;  3SGB I;  2F3C I;  2ENZ A;  1V1H A;  2YUU A;  1M8C A;  3PDN A;  3VDU A;  3FC3 A;  2LUY A;  2ORV A;  1IY5 A;  3RU0 A;  5FUY A;  1HJA I;  3UGI A;  3E2I A;  1U5K A;  1LR7 A;  4UXI A;  5FUW A;  1W4R A;  2V1C C;  3QTL D;  1N13 A;  1RFH A;  2LEO A;  3UFF A;  2QQ0 A;  1PTR A;  1Y1C A;  2KMQ A;  2W0T A;  2V1C A;  1XA6 A;  2ORW A;  1YTP A;  2WCY A;  2QQD A;  3QWP A;  5HI7 A;  1TUR A;  3GOX A;  2GKT I;  1PCE A;  1H0Z A;  2JZM A;  2KMR A;  2A20 A;  2JXD A;  2JW6 A;  2QPO A;  3VDP A;  1SGP I;  5DAE A;  3UGD A;  3OXL A;  2N17 A;  1XBT A;  1BUS A;  1UVG A;  1OMT A;  2SGD I;  1Z7K B;  1M8B A;  2ROW A;  1LR9 A;  2NU4 I;  2KMO A;  2OD1 A;  1PPF I;  4SGB I;  5EX3 A;  2N71 A;  4B6D A;  1YU6 C;  2OVO A;  3OL0 A;  1NUB A;  2L7X A;  1TBN A;  1FAR A;  2ODD A;  1R79 A;  5HQ8 A;  2QQE A;  2ARP F;  2CJS C;  2SGQ I;  5JHW C;  1DS2 I;  1IY6 A;  2NU2 I;  3E59 A;  2FNF X;  1DS3 I;  1PTQ A;  2QQC A;  2E73 A;  2SGE I;  2BUS A;  1UUC A;  1Y8F A;  3CXL A;  4UXJ A;  4E1P A;  1BMO A;  1Y1B A;  2ELI A;  2NU1 I;  3MEK A;  5CCL A;  2J9R A;  1TIH A;  2SGP I;  3HH2 C;  1TGS I;  3OVO A;  1KBF A;  1TBO A;  2WVJ A;  4JCV E;  1MT1 A;  4UXH A;  5CCM A;  3UEJ A;  5FUV A;  2JYY A;  2DIP A;  4GI3 C;  3TJQ A;  3SEK C;  2NU3 I;  2P6A C;  1OYV I;  2JA1 A;  2XRC A;  1SGD I;  2YQP A;  1CGI I;  3BJI A;  1CE3 A;  1CSO I; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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