1SGDI

Asp 18 variant of turkey ovomucoid inhibitor third domain complexed with streptomyces griseus proteinase b at ph 6.5
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
51
structure length
51
Chain Sequence
VDCSEYPKPACTDEYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Streptogrisin B
publication title Recruitment of a Buried K+ Ion to Stabilize the Negative Charge of Ionized P1 in the Hydrophobic Pocket: Crystal Structures of Glu18, Gln18, Asp18 and Asn18 Variants of Turkey Ovomucoid Inhibitor Third Domain Complexed with Streptomyces griseus Protease B at Various pH's
rcsb
source organism Meleagris gallopavo
molecule tags Hydrolase/hydrolase inhibitor
total genus 13
structure length 51
sequence length 51
ec nomenclature
pdb deposition date 1999-03-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
I PF00050 Kazal_1 Kazal-type serine protease inhibitor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.30 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 1sgdI00
2SGPI 2N52A 1KMAA 3TJQA 2KMOA 2NU0I 3OVOA 1TBRR 3SEKC 1BMOA 2B0UC 1HDLA 5JHWC 4SGBI 1FYBA 1CT0I 1TIHA 2XRCA 1Y1CA 2SGEI 3B4VC 3QTLD 1N13A 1OMUA 2QQDA 1TUSA 2KMRA 1CSOI 2KMQA 1SGYI 2SGDI 3SGQI 1OVOA 5DAEA 1OMTA 1OYVI 1MT1A 2F3CI 1CE3A 1IY6A 2P6AC 1HJAI 2ARPF 1TBQR 2GKVA 1YU6C 1SGNI 2NU2I 3SGBI 2JXDA 1PJUA 1AN1I 2M5XA 1CT4I 2N17A 2KMPA 4OVOA 1DS3I 1YTPA 2GKRI 1CT2I 2BUSA 2JZMA 2NU3I 1DS2I 1SGRI 2GKTI 2SGFI 1BUSA 1M8CA 1IW4A 1TGSI 1UUCA 1LR7A 1CGII 1SGEI 1Z7KB 2WCYA 2V53A 1UVFA 2NU1I 2ERWA 1LR8A 1LR9A 2NU4I 2QQCA 1HPTA 2KCXA 2OVOA 1IY5A 2N71A 1CGJI 1PPFI 1UVGA 1CHOI 1R0RI 1SGQI 1NUBA 1Y1BA 2LEOA 2JYYA 1SGPI 1M8BA 4HGUA 1TURA 1SGDI 3HH2C 1H0ZA 1PCEA 4GI3C 2SGQI
chains in the Genus database with same CATH superfamily
2SGPI 2N52A 1KMAA 3TJQA 3VDUA 2KMOA 5CCLA 2NU0I 4UXIA 1WTJA 2ORWA 2OD1A 3OVOA 4E1RA 1TBRR 3SEKC 2QQ0A 2E5RA 1BMOA 2B0UC 3OXFA 3BJIA 2JA1A 3KY9A 1HDLA 5JHWC 3TO9A 4AMLA 2WVJA 2GIVA 4SGBI 2LUYA 1FYBA 1WGTA 1CT0I 3VDPA 2QQEA 2J87A 1TIHA 2XRCA 1Y1CA 2SGEI 2ENNA 1V1IA 3B4VC 4JCVE 1K7VA 3QTLD 5HI7A 2LB7A 2ENZA 1N13A 1OMUA 1XA6A 2ODDA 1NXUA 1Y8FA 2CJSC 5J8CA 9WGAA 2QQDA 5HQ8A 1TUSA 2KMRA 2W0TA 1CSOI 2CWFA 2KMQA 3TO7A 1XX6A 1SGYI 4FKDA 1MJAA 3TOBA 2SGDI 3SGQI 1OVOA 3UGLA 1W4RA 3OXGA 5DAEA 3UEYA 1OMTA 1OYVI 1MJ9A 1TBNA 1MT1A 3MEKA 4UXJA 2F3CI 2N1AB 2J9RA 1CE3A 1IY6A 2P6AC 2Y0MA 1HJAI 1RFHA 2ARPF 3UGIA 3RU0A 3PDNA 1TBQR 2X3TA 1WGCA 2GKVA 3QWPA 1YU6C 2DB6A 3UOEA 5CCMA 1X4SA 5FUYA 7WGAA 1KBFA 1SGNI 2OU2A 2NU2I 3SGBI 2JXDA 1PJUA 2V1CC 1ULMA 2UZ3A 4MPIA 2V1CA 1FAQA 2ROWA 3OL0A 1AN1I 2GVIA 2M5XA 3OXLA 1CT4I 3FSXA 3CXLA 5J8FA 4L9MA 1XBTA 2N17A 1FARA 2KMPA 4OVOA 3R5AA 1DS3I 1YTPA 2GKRI 1CT2I 2BUSA 3TO6A 3UEJA 4A24A 2JZMA 1HEVA 2DIPA 2NU3I 1DS2I 2YUUA 1SGRI 3R5BA 1U5KA 2GKTI 2SGFI 1BUSA 3TOAA 2L7XA 1M8CA 2RIJA 1IW4A 5FUWA 1TGSI 3E2IA 1R79A 1S20A 1UUCA 1LR7A 1CGII 5FUXA 1SGEI 1ULKA 1X74A 1Z7KB 1PTQA 5E3RA 2WCYA 4E1PA 2ORVA 2V53A 5FUVA 3R5DA 1UVFA 2NU1I 3R5CA 5E3PA 1W3SA 2E73A 3FC3A 4DNCA 2ERWA 2UVOA 4WP4A 1K7UA 2RC4A 2X52A 3E59A 4UXHA 1PTRA 1UHAA 1V1HA 2JW6A 1WKXA 1TBOA 1LR8A 1LR9A 4B6DA 2NU4I 2WGCA 2PQ8A 2QQCA 1HPTA 2DKVA 5E3QA 3D00A 1VDDA 2KCXA 2OVOA 1IY5A 2K9HA 2L8EA 2N71A 1CGJI 1PPFI 1UVGA 3VE5A 5EX0A 1CHOI 1TOTA 1R0RI 1SGQI 3QAHA 1NUBA 1Y1BA 2LEOA 2FNFX 2VRWB 2QPOA 3UGDA 2CWHA 5EX3A 3GOXA 2A20A 1P9GA 1FY7A 1K7TA 1KBEA 2JYYA 1SGPI 1ULNA 1Q9BA 3UFFA 2B8TA 1M8BA 2YQPA 2CWGA 1MJBA 4HGUA 1TURA 1SGDI 1P9ZA 2OZUA 3HH2C 1H0ZA 2ELIA 1PCEA 1Z2IA 3FSYA 4GI3C 2SGQI
chains in the Genus database with same CATH topology
2SGPI 2N52A 1KMAA 3TJQA 3VDUA 2KMOA 5CCLA 2NU0I 4UXIA 2ORWA 2OD1A 3OVOA 4E1RA 1TBRR 3SEKC 2QQ0A 2E5RA 1BMOA 2B0UC 3OXFA 3BJIA 2JA1A 3KY9A 1HDLA 5JHWC 2WVJA 4SGBI 1FYBA 2LUYA 1CT0I 3VDPA 2QQEA 2J87A 1TIHA 2XRCA 1Y1CA 2SGEI 2ENNA 1V1IA 3B4VC 4JCVE 5HI7A 3QTLD 2ENZA 1N13A 1OMUA 1XA6A 2ODDA 1Y8FA 2CJSC 5HQ8A 2QQDA 1TUSA 2KMRA 2W0TA 1CSOI 2KMQA 1XX6A 1SGYI 4FKDA 2SGDI 3SGQI 1OVOA 3UGLA 1W4RA 3OXGA 5DAEA 3UEYA 1OMTA 1OYVI 1TBNA 3MEKA 1MT1A 4UXJA 2F3CI 2N1AB 2J9RA 1CE3A 1IY6A 2P6AC 1HJAI 1RFHA 2ARPF 3UGIA 3RU0A 3PDNA 1TBQR 2GKVA 3QWPA 1YU6C 2DB6A 5CCMA 1X4SA 5FUYA 1KBFA 1SGNI 2NU2I 3SGBI 2JXDA 1PJUA 2V1CC 2UZ3A 2V1CA 1FAQA 2ROWA 3OL0A 1AN1I 2GVIA 2M5XA 3OXLA 1CT4I 3CXLA 4L9MA 1XBTA 2N17A 1FARA 2KMPA 4OVOA 1DS3I 1YTPA 2GKRI 1CT2I 2BUSA 3UEJA 4A24A 2JZMA 2DIPA 2NU3I 1DS2I 2YUUA 1SGRI 1U5KA 2GKTI 2SGFI 1BUSA 2L7XA 1M8CA 1IW4A 5FUWA 1TGSI 3E2IA 1R79A 1UUCA 1LR7A 1CGII 5FUXA 1SGEI 1X74A 1Z7KB 1PTQA 2WCYA 4E1PA 2ORVA 2V53A 5FUVA 1UVFA 2NU1I 1W3SA 2E73A 3FC3A 2ERWA 3E59A 4UXHA 1PTRA 1V1HA 2JW6A 1TBOA 1LR8A 1LR9A 4B6DA 2NU4I 2QQCA 1HPTA 3D00A 1VDDA 2KCXA 2OVOA 1IY5A 2K9HA 2L8EA 2N71A 1CGJI 1PPFI 1UVGA 3VE5A 5EX0A 1CHOI 1TOTA 1R0RI 1SGQI 1NUBA 1Y1BA 2LEOA 2FNFX 2VRWB 2QPOA 3UGDA 5EX3A 3GOXA 2A20A 1KBEA 2JYYA 1SGPI 3UFFA 2B8TA 1M8BA 2YQPA 4HGUA 1TURA 1SGDI 3HH2C 1H0ZA 2ELIA 1PCEA 4GI3C 2SGQI
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2SGP I;  2N52 A;  1KMA A;  3TJQ A;  2KMO A;  2NU0 I;  3OVO A;  1TBR R;  3SEK C;  1BMO A;  2B0U C;  1HDL A;  5JHW C;  4SGB I;  1FYB A;  1CT0 I;  1TIH A;  2XRC A;  1Y1C A;  2SGE I;  3B4V C;  3QTL D;  1N13 A;  1OMU A;  2QQD A;  1TUS A;  2KMR A;  1CSO I;  2KMQ A;  1SGY I;  2SGD I;  3SGQ I;  1OVO A;  5DAE A;  1OMT A;  1OYV I;  1MT1 A;  2F3C I;  1CE3 A;  1IY6 A;  2P6A C;  1HJA I;  2ARP F;  1TBQ R;  2GKV A;  1YU6 C;  1SGN I;  2NU2 I;  3SGB I;  2JXD A;  1PJU A;  1AN1 I;  2M5X A;  1CT4 I;  2N17 A;  2KMP A;  4OVO A;  1DS3 I;  1YTP A;  2GKR I;  1CT2 I;  2BUS A;  2JZM A;  2NU3 I;  1DS2 I;  1SGR I;  2GKT I;  2SGF I;  1BUS A;  1M8C A;  1IW4 A;  1TGS I;  1UUC A;  1LR7 A;  1CGI I;  1SGE I;  1Z7K B;  2WCY A;  2V53 A;  1UVF A;  2NU1 I;  2ERW A;  1LR8 A;  1LR9 A;  2NU4 I;  2QQC A;  1HPT A;  2KCX A;  2OVO A;  1IY5 A;  2N71 A;  1CGJ I;  1PPF I;  1UVG A;  1CHO I;  1R0R I;  1SGQ I;  1NUB A;  1Y1B A;  2LEO A;  2JYY A;  1SGP I;  1M8B A;  4HGU A;  1TUR A;  1SGD I;  3HH2 C;  1H0Z A;  1PCE A;  4GI3 C;  2SGQ I; 
#chains in the Genus database with same CATH topology
 2SGP I;  2N52 A;  1KMA A;  3TJQ A;  3VDU A;  2KMO A;  5CCL A;  2NU0 I;  4UXI A;  1WTJ A;  2ORW A;  2OD1 A;  3OVO A;  4E1R A;  1TBR R;  3SEK C;  2QQ0 A;  2E5R A;  1BMO A;  2B0U C;  3OXF A;  3BJI A;  2JA1 A;  3KY9 A;  1HDL A;  5JHW C;  3TO9 A;  4AML A;  2WVJ A;  2GIV A;  4SGB I;  2LUY A;  1FYB A;  1WGT A;  1CT0 I;  3VDP A;  2QQE A;  2J87 A;  1TIH A;  2XRC A;  1Y1C A;  2SGE I;  2ENN A;  1V1I A;  3B4V C;  4JCV E;  1K7V A;  3QTL D;  5HI7 A;  2LB7 A;  2ENZ A;  1N13 A;  1OMU A;  1XA6 A;  2ODD A;  1NXU A;  1Y8F A;  2CJS C;  5J8C A;  9WGA A;  2QQD A;  5HQ8 A;  1TUS A;  2KMR A;  2W0T A;  1CSO I;  2CWF A;  2KMQ A;  3TO7 A;  1XX6 A;  1SGY I;  4FKD A;  1MJA A;  3TOB A;  2SGD I;  3SGQ I;  1OVO A;  3UGL A;  1W4R A;  3OXG A;  5DAE A;  3UEY A;  1OMT A;  1OYV I;  1MJ9 A;  1TBN A;  1MT1 A;  3MEK A;  4UXJ A;  2F3C I;  2N1A B;  2J9R A;  1CE3 A;  1IY6 A;  2P6A C;  2Y0M A;  1HJA I;  1RFH A;  2ARP F;  3UGI A;  3RU0 A;  3PDN A;  1TBQ R;  2X3T A;  1WGC A;  2GKV A;  3QWP A;  1YU6 C;  2DB6 A;  3UOE A;  5CCM A;  1X4S A;  5FUY A;  7WGA A;  1KBF A;  1SGN I;  2OU2 A;  2NU2 I;  3SGB I;  2JXD A;  1PJU A;  2V1C C;  1ULM A;  2UZ3 A;  4MPI A;  2V1C A;  1FAQ A;  2ROW A;  3OL0 A;  1AN1 I;  2GVI A;  2M5X A;  3OXL A;  1CT4 I;  3FSX A;  3CXL A;  5J8F A;  4L9M A;  1XBT A;  2N17 A;  1FAR A;  2KMP A;  4OVO A;  3R5A A;  1DS3 I;  1YTP A;  2GKR I;  1CT2 I;  2BUS A;  3TO6 A;  3UEJ A;  4A24 A;  2JZM A;  1HEV A;  2DIP A;  2NU3 I;  1DS2 I;  2YUU A;  1SGR I;  3R5B A;  1U5K A;  2GKT I;  2SGF I;  1BUS A;  3TOA A;  2L7X A;  1M8C A;  2RIJ A;  1IW4 A;  5FUW A;  1TGS I;  3E2I A;  1R79 A;  1S20 A;  1UUC A;  1LR7 A;  1CGI I;  5FUX A;  1SGE I;  1ULK A;  1X74 A;  1Z7K B;  1PTQ A;  5E3R A;  2WCY A;  4E1P A;  2ORV A;  2V53 A;  5FUV A;  3R5D A;  1UVF A;  2NU1 I;  3R5C A;  5E3P A;  1W3S A;  2E73 A;  3FC3 A;  4DNC A;  2ERW A;  2UVO A;  4WP4 A;  1K7U A;  2RC4 A;  2X52 A;  3E59 A;  4UXH A;  1PTR A;  1UHA A;  1V1H A;  2JW6 A;  1WKX A;  1TBO A;  1LR8 A;  1LR9 A;  4B6D A;  2NU4 I;  2WGC A;  2PQ8 A;  2QQC A;  1HPT A;  2DKV A;  5E3Q A;  3D00 A;  1VDD A;  2KCX A;  2OVO A;  1IY5 A;  2K9H A;  2L8E A;  2N71 A;  1CGJ I;  1PPF I;  1UVG A;  3VE5 A;  5EX0 A;  1CHO I;  1TOT A;  1R0R I;  1SGQ I;  3QAH A;  1NUB A;  1Y1B A;  2LEO A;  2FNF X;  2VRW B;  2QPO A;  3UGD A;  2CWH A;  5EX3 A;  3GOX A;  2A20 A;  1P9G A;  1FY7 A;  1K7T A;  1KBE A;  2JYY A;  1SGP I;  1ULN A;  1Q9B A;  3UFF A;  2B8T A;  1M8B A;  2YQP A;  2CWG A;  1MJB A;  4HGU A;  1TUR A;  1SGD I;  1P9Z A;  2OZU A;  3HH2 C;  1H0Z A;  2ELI A;  1PCE A;  1Z2I A;  3FSY A;  4GI3 C;  2SGQ I; 
#chains in the Genus database with same CATH homology
 2SGP I;  2N52 A;  1KMA A;  3TJQ A;  3VDU A;  2KMO A;  5CCL A;  2NU0 I;  4UXI A;  2ORW A;  2OD1 A;  3OVO A;  4E1R A;  1TBR R;  3SEK C;  2QQ0 A;  2E5R A;  1BMO A;  2B0U C;  3OXF A;  3BJI A;  2JA1 A;  3KY9 A;  1HDL A;  5JHW C;  2WVJ A;  4SGB I;  1FYB A;  2LUY A;  1CT0 I;  3VDP A;  2QQE A;  2J87 A;  1TIH A;  2XRC A;  1Y1C A;  2SGE I;  2ENN A;  1V1I A;  3B4V C;  4JCV E;  5HI7 A;  3QTL D;  2ENZ A;  1N13 A;  1OMU A;  1XA6 A;  2ODD A;  1Y8F A;  2CJS C;  5HQ8 A;  2QQD A;  1TUS A;  2KMR A;  2W0T A;  1CSO I;  2KMQ A;  1XX6 A;  1SGY I;  4FKD A;  2SGD I;  3SGQ I;  1OVO A;  3UGL A;  1W4R A;  3OXG A;  5DAE A;  3UEY A;  1OMT A;  1OYV I;  1TBN A;  3MEK A;  1MT1 A;  4UXJ A;  2F3C I;  2N1A B;  2J9R A;  1CE3 A;  1IY6 A;  2P6A C;  1HJA I;  1RFH A;  2ARP F;  3UGI A;  3RU0 A;  3PDN A;  1TBQ R;  2GKV A;  3QWP A;  1YU6 C;  2DB6 A;  5CCM A;  1X4S A;  5FUY A;  1KBF A;  1SGN I;  2NU2 I;  3SGB I;  2JXD A;  1PJU A;  2V1C C;  2UZ3 A;  2V1C A;  1FAQ A;  2ROW A;  3OL0 A;  1AN1 I;  2GVI A;  2M5X A;  3OXL A;  1CT4 I;  3CXL A;  4L9M A;  1XBT A;  2N17 A;  1FAR A;  2KMP A;  4OVO A;  1DS3 I;  1YTP A;  2GKR I;  1CT2 I;  2BUS A;  3UEJ A;  4A24 A;  2JZM A;  2DIP A;  2NU3 I;  1DS2 I;  2YUU A;  1SGR I;  1U5K A;  2GKT I;  2SGF I;  1BUS A;  2L7X A;  1M8C A;  1IW4 A;  5FUW A;  1TGS I;  3E2I A;  1R79 A;  1UUC A;  1LR7 A;  1CGI I;  5FUX A;  1SGE I;  1X74 A;  1Z7K B;  1PTQ A;  2WCY A;  4E1P A;  2ORV A;  2V53 A;  5FUV A;  1UVF A;  2NU1 I;  1W3S A;  2E73 A;  3FC3 A;  2ERW A;  3E59 A;  4UXH A;  1PTR A;  1V1H A;  2JW6 A;  1TBO A;  1LR8 A;  1LR9 A;  4B6D A;  2NU4 I;  2QQC A;  1HPT A;  3D00 A;  1VDD A;  2KCX A;  2OVO A;  1IY5 A;  2K9H A;  2L8E A;  2N71 A;  1CGJ I;  1PPF I;  1UVG A;  3VE5 A;  5EX0 A;  1CHO I;  1TOT A;  1R0R I;  1SGQ I;  1NUB A;  1Y1B A;  2LEO A;  2FNF X;  2VRW B;  2QPO A;  3UGD A;  5EX3 A;  3GOX A;  2A20 A;  1KBE A;  2JYY A;  1SGP I;  3UFF A;  2B8T A;  1M8B A;  2YQP A;  4HGU A;  1TUR A;  1SGD I;  3HH2 C;  1H0Z A;  2ELI A;  1PCE A;  4GI3 C;  2SGQ I; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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