The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
42
|
sequence length |
171
|
structure length |
171
|
Chain Sequence |
ERCGEQGSNMECPNNLCCSQYGYCGMGGDYCGKGCQNGACWTSKRCGSQAGGATCTNNQCCSQYGYCGFGAEYCGAGCQGGPCRADIKCGSQAGGKLCPNNLCCSQWGFCGLGSEFCGGGCQSGACSTDKPCGKDAGGRVCTNNYCCSKWGSCGIGPGYCGAGCQSGGCDG
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
2.2 A resolution structure analysis of two refined N-acetylneuraminyl-lactose--wheat germ agglutinin isolectin complexes.
pubmed doi rcsb |
| molecule keywords |
WHEAT GERM LECTIN
|
| source organism |
Triticum aestivum
|
| molecule tags |
Lectin (agglutinin)
|
| total genus |
42
|
| structure length |
171
|
| sequence length |
171
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 1990-04-03 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00187 | Chitin_bind_1 | Chitin recognition protein |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Wheat Germ Agglutinin (Isolectin 2); domain 1 | Endochitinase-like | ||
| Alpha Beta | 2-Layer Sandwich | Wheat Germ Agglutinin (Isolectin 2); domain 1 | Endochitinase-like | ||
| Alpha Beta | 2-Layer Sandwich | Wheat Germ Agglutinin (Isolectin 2); domain 1 | Endochitinase-like | ||
| Alpha Beta | 2-Layer Sandwich | Wheat Germ Agglutinin (Isolectin 2); domain 1 | Endochitinase-like |
#chains in the Genus database with same CATH superfamily 9WGA A; 2X52 A; 4AML A; 1ULK A; 7WGA A; 1P9Z A; 1K7U A; 1K7T A; 1UHA A; 1WGC A; 4MPI A; 1ULN A; 1WKX A; 1HEV A; 1ULM A; 2UVO A; 2WGC A; 1WGT A; 1P9G A; 2X3T A; 1Q9B A; 2LB7 A; 2CWG A; 4WP4 A; 2DKV A; 1K7V A; #chains in the Genus database with same CATH topology 1Y1B A; 2M5X A; 5E3R A; 1SGQ I; 1XX6 A; 3TOA A; 3CXL A; 3B4V C; 1IY5 A; 5J8F A; 1VDD A; 2KMR A; 1DS3 I; 1FAR A; 2J9R A; 2KMO A; 3QWP A; 3R5C A; 1TOT A; 3QTL D; 1X4S A; 1TUR A; 3R5A A; 2WVJ A; 2JZM A; 1HPT A; 1TBR R; 1BUS A; 1CSO I; 1WGC A; 4FKD A; 2CWF A; 1S20 A; 1WKX A; 1LR7 A; 2N17 A; 1X74 A; 3KY9 A; 2PQ8 A; 2NU3 I; 2VRW B; 4E1R A; 2JA1 A; 2WGC A; 1XBT A; 1IW4 A; 2E73 A; 4UXI A; 2SGP I; 1V1I A; 4UXJ A; 2GKT I; 2DIP A; 3R5B A; 4SGB I; 3UEY A; 2ENZ A; 5EX3 A; 4L9M A; 1PTR A; 1AN1 I; 1CT0 I; 2P6A C; 3MEK A; 1PPF I; 2CJS C; 3TO9 A; 2DKV A; 3OVO A; 1SGN I; 1M8C A; 1DS2 I; 1OMU A; 9WGA A; 2JW6 A; 1Z2I A; 2BUS A; 3UGI A; 1TBO A; 3UGL A; 4AML A; 7WGA A; 1M8B A; 3OXF A; 3TOB A; 1UVG A; 2W0T A; 5E3Q A; 1TBQ R; 1YTP A; 1UHA A; 1Y1C A; 2SGF I; 4UXH A; 5JHW C; 2KMP A; 1CGI I; 2OU2 A; 1ULN A; 2QQ0 A; 2RIJ A; 2SGQ I; 4MPI A; 2QQD A; 2NU4 I; 1CT2 I; 1RFH A; 3E59 A; 3R5D A; 2B8T A; 2E5R A; 2K9H A; 1MT1 A; 2NU2 I; 2YQP A; 1TGS I; 3UGD A; 2X3T A; 5FUW A; 3BJI A; 4HGU A; 3QAH A; 4DNC A; 2L8E A; 1OYV I; 2SGE I; 1Q9B A; 2B0U C; 1PTQ A; 2JYY A; 2LB7 A; 1HJA I; 3SGQ I; 3TJQ A; 2FNF X; 2V53 A; 1Z7K B; 1FYB A; 2A20 A; 2J87 A; 1KBE A; 3E2I A; 3VDP A; 1UUC A; 5HQ8 A; 3TO7 A; 4GI3 C; 1V1H A; 4JCV E; 3PDN A; 2ENN A; 1ULK A; 5J8C A; 1W3S A; 1SGD I; 1P9Z A; 2JXD A; 1IY6 A; 1TBN A; 1K7T A; 2DB6 A; 2N1A B; 3OXG A; 1HDL A; 3FSX A; 2Y0M A; 1CE3 A; 1HEV A; 2UVO A; 3FSY A; 1FY7 A; 3D00 A; 1W4R A; 1N13 A; 1CT4 I; 1SGP I; 2ROW A; 3SEK C; 2LEO A; 2OD1 A; 2V1C C; 1LR9 A; 2WCY A; 2GKV A; 1XA6 A; 5HI7 A; 3TO6 A; 4E1P A; 1FAQ A; 1TIH A; 2ORV A; 3UOE A; 2GVI A; 2KCX A; 4A24 A; 3VDU A; 1OVO A; 5EX0 A; 1SGE I; 2L7X A; 2ODD A; 1OMT A; 2XRC A; 2KMQ A; 2CWG A; 1SGR I; 1YU6 C; 1SGY I; 2QPO A; 1Y8F A; 2QQE A; 1K7V A; 2N71 A; 3UFF A; 2SGD I; 1BMO A; 2F3C I; 2OVO A; 2ERW A; 2X52 A; 2GKR I; 2NU0 I; 1U5K A; 1KBF A; 1MJB A; 1WTJ A; 5FUX A; 1K7U A; 2NU1 I; 3GOX A; 1PJU A; 1TUS A; 5DAE A; 5CCM A; 3OL0 A; 1CGJ I; 2CWH A; 2LUY A; 1R79 A; 4B6D A; 5CCL A; 1ULM A; 1LR8 A; 2N52 A; 1KMA A; 3VE5 A; 3SGB I; 1CHO I; 1UVF A; 2ELI A; 2QQC A; 5E3P A; 2RC4 A; 3FC3 A; 1WGT A; 1R0R I; 1NXU A; 1P9G A; 2V1C A; 3UEJ A; 1NUB A; 2UZ3 A; 3OXL A; 2OZU A; 1MJ9 A; 2GIV A; 1MJA A; 2YUU A; 3RU0 A; 4OVO A; 5FUY A; 4WP4 A; 5FUV A; 1H0Z A; 3HH2 C; 1PCE A; 2ORW A; 2ARP F; #chains in the Genus database with same CATH homology 9WGA A; 2X52 A; 4AML A; 1ULK A; 7WGA A; 1P9Z A; 1K7U A; 1K7T A; 1UHA A; 1WGC A; 4MPI A; 1ULN A; 1WKX A; 1HEV A; 1ULM A; 2UVO A; 2WGC A; 1WGT A; 1P9G A; 2X3T A; 1Q9B A; 2LB7 A; 2CWG A; 4WP4 A; 2DKV A; 1K7V A;
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