2X3TA

Glutaraldehyde-crosslinked wheat germ agglutinin isolectin 1 crystal soaked with a synthetic glycopeptide
Total Genus 48
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
170
structure length
170
Chain Sequence
ERCGEQGSNMECPNNLCCSQYGYCGMGGDYCGKGCQNGACWTSKRCGSQAGGATCTNNQCCSQYGYCGFGAEYCGAGCQGGPCRADIKCGSQAGGKLCPNNLCCSQWGFCGLGSEFCGGGCQSGACSTDKPCGKDAGGRVCTNNYCCSKWGSCGIGPGYCGAGCQSGGCD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Sugar binding protein/peptide
molecule keywords AGGLUTININ ISOLECTIN 1
publication title Structural Basis of Multivalent Binding to Wheat Germ Agglutinin.
pubmed doi rcsb
total genus 48
structure length 170
sequence length 170
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2010-01-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00187 Chitin_bind_1 Chitin recognition protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 2x3tA04
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 2x3tA02
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 2x3tA03
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 2x3tA01
2X52A 1Q9BA 1K7UA 1WGTA 7WGAA 1ULNA 1WKXA 4MPIA 1K7TA 1HEVA 1ULKA 2DKVA 2CWGA 4WP4A 1WGCA 1P9ZA 2WGCA 9WGAA 1P9GA 1ULMA 2UVOA 1K7VA 2LB7A 4AMLA 2X3TA 1UHAA
chains in the Genus database with same CATH superfamily
5E3RA 2ENZA 1R79A 5EX3A 3R5BA 5J8CA 2JZMA 3VDUA 1FYBA 1H0ZA 2K9HA 3E59A 2YQPA 5FUVA 1VDDA 1SGPI 1R0RI 2ORWA 2SGDI 2KMOA 1SGRI 2BUSA 1SGEI 2NU0I 2WVJA 4UXHA 2DIPA 3UGIA 5CCLA 2JYYA 1CT4I 5EX0A 2NU4I 2ODDA 1YTPA 1CT0I 2JW6A 2XRCA 3SGBI 1HEVA 1DS2I 1ULKA 2CWGA 2DKVA 2N52A 2OVOA 3KY9A 3VE5A 1DS3I 1M8CA 1LR9A 1P9ZA 1CSOI 3FSXA 1SGYI 1Z2IA 1Y1CA 1MJBA 2OU2A 1CGII 1Z7KB 1P9GA 1FAQA 5FUXA 1NXUA 3D00A 1X74A 1FY7A 1PCEA 2SGFI 1KBFA 2SGPI 4AMLA 4B6DA 1UHAA 1OMUA 2ORVA 2F3CI 2M5XA 2NU3I 2QQEA 2CWHA 2ERWA 2GIVA 2UZ3A 3FSYA 3QTLD 5DAEA 5JHWC 1WTJA 1SGNI 2X52A 2JXDA 1U5KA 1K7UA 4OVOA 1TBQR 2QPOA 7WGAA 2N1AB 1PTQA 2WCYA 1CE3A 2CWFA 3OL0A 4DNCA 2SGQI 2PQ8A 3QWPA 4UXJA 3R5CA 1K7TA 2OZUA 2V1CC 3R5AA 4E1PA 1IY5A 1MJ9A 1WGCA 2GKRI 1OMTA 3UGDA 1XBTA 2GVIA 3PDNA 5CCMA 1LR7A 2KMRA 1UVGA 2P6AC 1V1HA 2JA1A 1TOTA 2LB7A 4L9MA 2J87A 4HGUA 1SGDI 1Y8FA 2V1CA 9WGAA 2X3TA 1TBOA 1X4SA 1FARA 2LEOA 2ROWA 5E3PA 3TOBA 3FC3A 1UUCA 2Y0MA 3OXFA 1CHOI 1TIHA 4JCVE 3TJQA 2L8EA 1Q9BA 2V53A 1WGTA 4E1RA 1HJAI 1W4RA 2RC4A 2A20A 3GOXA 2OD1A 3TOAA 2CJSC 3UOEA 2N71A 4MPIA 1M8BA 1SGQI 3R5DA 2GKTI 2N17A 2WGCA 4FKDA 2DB6A 2KMPA 2SGEI 2QQCA 3VDPA 3SGQI 3B4VC 1HDLA 3SEKC 1IY6A 2B0UC 3HH2C 2L7XA 2YUUA 3RU0A 3UEYA 1KBEA 1HPTA 2E5RA 2FNFX 5FUWA 1TBRR 2UVOA 5E3QA 5FUYA 1OYVI 1XX6A 2KCXA 2E73A 3CXLA 1TGSI 3UFFA 2B8TA 1XA6A 1MT1A 1TUSA 4UXIA 4A24A 1PTRA 1AN1I 2NU1I 5J8FA 5HQ8A 1BMOA 1MJAA 1N13A 1OVOA 3OVOA 1KMAA 2J9RA 2NU2I 2KMQA 3E2IA 3TO9A 1ULNA 3MEKA 1IW4A 1YU6C 2ELIA 1WKXA 1NUBA 1PPFI 2ENNA 1TBNA 2RIJA 4SGBI 1V1IA 2W0TA 3OXGA 4WP4A 2QQDA 1UVFA 2GKVA 1S20A 1PJUA 2QQ0A 1TURA 2VRWB 3BJIA 2ARPF 3OXLA 3UEJA 3UGLA 1Y1BA 3QAHA 1CGJI 5HI7A 3TO7A 3TO6A 1ULMA 1CT2I 1LR8A 1K7VA 1BUSA 1W3SA 2LUYA 1RFHA 4GI3C
chains in the Genus database with same CATH topology
2X52A 1Q9BA 1K7UA 1WGTA 7WGAA 1ULNA 1WKXA 4MPIA 1K7TA 1HEVA 1ULKA 2DKVA 2CWGA 4WP4A 1WGCA 1P9ZA 2WGCA 9WGAA 1P9GA 1ULMA 2UVOA 1K7VA 2LB7A 4AMLA 2X3TA 1UHAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2X52 A;  1Q9B A;  1K7U A;  1WGT A;  7WGA A;  1ULN A;  1WKX A;  4MPI A;  1K7T A;  1HEV A;  1ULK A;  2DKV A;  2CWG A;  4WP4 A;  1WGC A;  1P9Z A;  2WGC A;  9WGA A;  1P9G A;  1ULM A;  2UVO A;  1K7V A;  2LB7 A;  4AML A;  2X3T A;  1UHA A; 
#chains in the Genus database with same CATH topology
 5E3R A;  2ENZ A;  1R79 A;  5EX3 A;  3R5B A;  5J8C A;  2JZM A;  3VDU A;  1FYB A;  1H0Z A;  2K9H A;  3E59 A;  2YQP A;  5FUV A;  1VDD A;  1SGP I;  1R0R I;  2ORW A;  2SGD I;  2KMO A;  1SGR I;  2BUS A;  1SGE I;  2NU0 I;  2WVJ A;  4UXH A;  2DIP A;  3UGI A;  5CCL A;  2JYY A;  1CT4 I;  5EX0 A;  2NU4 I;  2ODD A;  1YTP A;  1CT0 I;  2JW6 A;  2XRC A;  3SGB I;  1HEV A;  1DS2 I;  1ULK A;  2CWG A;  2DKV A;  2N52 A;  2OVO A;  3KY9 A;  3VE5 A;  1DS3 I;  1M8C A;  1LR9 A;  1P9Z A;  1CSO I;  3FSX A;  1SGY I;  1Z2I A;  1Y1C A;  1MJB A;  2OU2 A;  1CGI I;  1Z7K B;  1P9G A;  1FAQ A;  5FUX A;  1NXU A;  3D00 A;  1X74 A;  1FY7 A;  1PCE A;  2SGF I;  1KBF A;  2SGP I;  4AML A;  4B6D A;  1UHA A;  1OMU A;  2ORV A;  2F3C I;  2M5X A;  2NU3 I;  2QQE A;  2CWH A;  2ERW A;  2GIV A;  2UZ3 A;  3FSY A;  3QTL D;  5DAE A;  5JHW C;  1WTJ A;  1SGN I;  2X52 A;  2JXD A;  1U5K A;  1K7U A;  4OVO A;  1TBQ R;  2QPO A;  7WGA A;  2N1A B;  1PTQ A;  2WCY A;  1CE3 A;  2CWF A;  3OL0 A;  4DNC A;  2SGQ I;  2PQ8 A;  3QWP A;  4UXJ A;  3R5C A;  1K7T A;  2OZU A;  2V1C C;  3R5A A;  4E1P A;  1IY5 A;  1MJ9 A;  1WGC A;  2GKR I;  1OMT A;  3UGD A;  1XBT A;  2GVI A;  3PDN A;  5CCM A;  1LR7 A;  2KMR A;  1UVG A;  2P6A C;  1V1H A;  2JA1 A;  1TOT A;  2LB7 A;  4L9M A;  2J87 A;  4HGU A;  1SGD I;  1Y8F A;  2V1C A;  9WGA A;  2X3T A;  1TBO A;  1X4S A;  1FAR A;  2LEO A;  2ROW A;  5E3P A;  3TOB A;  3FC3 A;  1UUC A;  2Y0M A;  3OXF A;  1CHO I;  1TIH A;  4JCV E;  3TJQ A;  2L8E A;  1Q9B A;  2V53 A;  1WGT A;  4E1R A;  1HJA I;  1W4R A;  2RC4 A;  2A20 A;  3GOX A;  2OD1 A;  3TOA A;  2CJS C;  3UOE A;  2N71 A;  4MPI A;  1M8B A;  1SGQ I;  3R5D A;  2GKT I;  2N17 A;  2WGC A;  4FKD A;  2DB6 A;  2KMP A;  2SGE I;  2QQC A;  3VDP A;  3SGQ I;  3B4V C;  1HDL A;  3SEK C;  1IY6 A;  2B0U C;  3HH2 C;  2L7X A;  2YUU A;  3RU0 A;  3UEY A;  1KBE A;  1HPT A;  2E5R A;  2FNF X;  5FUW A;  1TBR R;  2UVO A;  5E3Q A;  5FUY A;  1OYV I;  1XX6 A;  2KCX A;  2E73 A;  3CXL A;  1TGS I;  3UFF A;  2B8T A;  1XA6 A;  1MT1 A;  1TUS A;  4UXI A;  4A24 A;  1PTR A;  1AN1 I;  2NU1 I;  5J8F A;  5HQ8 A;  1BMO A;  1MJA A;  1N13 A;  1OVO A;  3OVO A;  1KMA A;  2J9R A;  2NU2 I;  2KMQ A;  3E2I A;  3TO9 A;  1ULN A;  3MEK A;  1IW4 A;  1YU6 C;  2ELI A;  1WKX A;  1NUB A;  1PPF I;  2ENN A;  1TBN A;  2RIJ A;  4SGB I;  1V1I A;  2W0T A;  3OXG A;  4WP4 A;  2QQD A;  1UVF A;  2GKV A;  1S20 A;  1PJU A;  2QQ0 A;  1TUR A;  2VRW B;  3BJI A;  2ARP F;  3OXL A;  3UEJ A;  3UGL A;  1Y1B A;  3QAH A;  1CGJ I;  5HI7 A;  3TO7 A;  3TO6 A;  1ULM A;  1CT2 I;  1LR8 A;  1K7V A;  1BUS A;  1W3S A;  2LUY A;  1RFH A;  4GI3 C; 
#chains in the Genus database with same CATH homology
 2X52 A;  1Q9B A;  1K7U A;  1WGT A;  7WGA A;  1ULN A;  1WKX A;  4MPI A;  1K7T A;  1HEV A;  1ULK A;  2DKV A;  2CWG A;  4WP4 A;  1WGC A;  1P9Z A;  2WGC A;  9WGA A;  1P9G A;  1ULM A;  2UVO A;  1K7V A;  2LB7 A;  4AML A;  2X3T A;  1UHA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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