2X3TA

Glutaraldehyde-crosslinked wheat germ agglutinin isolectin 1 crystal soaked with a synthetic glycopeptide
Total Genus 48
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
170
structure length
170
Chain Sequence
ERCGEQGSNMECPNNLCCSQYGYCGMGGDYCGKGCQNGACWTSKRCGSQAGGATCTNNQCCSQYGYCGFGAEYCGAGCQGGPCRADIKCGSQAGGKLCPNNLCCSQWGFCGLGSEFCGGGCQSGACSTDKPCGKDAGGRVCTNNYCCSKWGSCGIGPGYCGAGCQSGGCD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords AGGLUTININ ISOLECTIN 1
publication title Structural Basis of Multivalent Binding to Wheat Germ Agglutinin.
pubmed doi rcsb
molecule tags Sugar binding protein/peptide
total genus 48
structure length 170
sequence length 170
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2010-01-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00187 Chitin_bind_1 Chitin recognition protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 2x3tA04
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 2x3tA02
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 2x3tA03
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 2x3tA01
1K7UA 1P9GA 7WGAA 4AMLA 2WGCA 1ULMA 4MPIA 1UHAA 1WGTA 1WGCA 1K7TA 4WP4A 9WGAA 2UVOA 1WKXA 1K7VA 1Q9BA 1ULKA 1HEVA 2CWGA 1ULNA 2DKVA 2LB7A 2X3TA 1P9ZA 2X52A
chains in the Genus database with same CATH superfamily
2QPOA 1CT0I 3E59A 1SGEI 1W3SA 2GKVA 1P9GA 1CE3A 1XA6A 2RC4A 2KMPA 5FUYA 3OXLA 2K9HA 1N13A 2WGCA 2YUUA 1RFHA 1SGRI 1MJBA 1YU6C 2LEOA 1BMOA 3OXFA 1R0RI 2B0UC 1CGJI 3OVOA 1R79A 1PCEA 1VDDA 2N17A 2OZUA 1PTRA 5JHWC 2B8TA 2JA1A 1S20A 1Q9BA 2N1AB 2J87A 1SGQI 2CWGA 1TUSA 1SGYI 2LB7A 2W0TA 3FSXA 2X3TA 3KY9A 2QQ0A 2SGPI 3SEKC 5FUXA 1TBNA 3UEYA 1KMAA 1LR8A 3E2IA 1K7UA 1UVFA 1TBQR 5HQ8A 4A24A 1SGNI 2KCXA 1UVGA 1SGDI 4AMLA 1Z7KB 5CCMA 1HPTA 2M5XA 1MT1A 2OD1A 4GI3C 1ULMA 1OMUA 2V1CC 4OVOA 2ORWA 1TBRR 5FUWA 5CCLA 2Y0MA 1H0ZA 1CT2I 1OVOA 1TBOA 1FAQA 1DS2I 2QQDA 1V1HA 1BUSA 1K7TA 2RIJA 2KMOA 4L9MA 2NU4I 2LUYA 1CT4I 1ULKA 3R5AA 1FARA 3RU0A 1XBTA 2NU1I 1HEVA 1HJAI 2VRWB 2PQ8A 2ENNA 2DKVA 2QQCA 1Y1BA 1CHOI 5EX3A 1YTPA 1M8CA 4E1PA 3R5CA 1Z2IA 1IW4A 5DAEA 4SGBI 5HI7A 1PPFI 1FYBA 3UGLA 1LR9A 2L8EA 3TOAA 2JYYA 2L7XA 1WTJA 1M8BA 3SGBI 5EX0A 4UXHA 7WGAA 3VE5A 2QQEA 3SGQI 1KBEA 2GKRI 1MJAA 2E5RA 2P6AC 1X74A 4DNCA 4MPIA 2ELIA 2GKTI 1LR7A 1PJUA 1UHAA 2J9RA 2XRCA 4B6DA 3D00A 5J8FA 2NU2I 3FC3A 5E3QA 1V1IA 1MJ9A 2E73A 2N52A 2SGFI 1X4SA 3UEJA 1TIHA 3TJQA 1TOTA 3UFFA 9WGAA 1WKXA 2DB6A 1K7VA 1OMTA 2ENZA 2NU3I 3QWPA 1Y1CA 3R5BA 4FKDA 4HGUA 2F3CI 1ULNA 2CJSC 3TO9A 2CWHA 1SGPI 2WVJA 1P9ZA 1DS3I 2FNFX 2KMRA 3OL0A 3TOBA 5FUVA 3UOEA 3BJIA 5E3PA 2DIPA 2OVOA 2SGEI 2V1CA 3VDUA 2ODDA 2ROWA 4JCVE 2OU2A 2YQPA 1FY7A 2CWFA 1IY6A 3TO7A 3R5DA 3HH2C 3UGDA 1U5KA 1KBFA 1Y8FA 2BUSA 1HDLA 4UXJA 2KMQA 1TGSI 3OXGA 1W4RA 2N71A 2SGDI 2WCYA 3MEKA 3QAHA 3GOXA 2GVIA 2JXDA 1WGTA 2JW6A 2UZ3A 1WGCA 3VDPA 1XX6A 1CSOI 3QTLD 2GIVA 1PTQA 4WP4A 3UGIA 2UVOA 3PDNA 1UUCA 2JZMA 2NU0I 3CXLA 5E3RA 1CGII 1TURA 3TO6A 2ERWA 4UXIA 2V53A 5J8CA 1NUBA 1IY5A 4E1RA 3FSYA 3B4VC 2X52A 2ARPF 2ORVA 2SGQI 1OYVI 1NXUA 2A20A 1AN1I
chains in the Genus database with same CATH topology
1K7UA 1P9GA 7WGAA 4AMLA 2WGCA 1ULMA 4MPIA 1UHAA 1WGTA 1WGCA 1K7TA 4WP4A 9WGAA 2UVOA 1WKXA 1K7VA 1Q9BA 1ULKA 1HEVA 2CWGA 1ULNA 2DKVA 2LB7A 2X3TA 1P9ZA 2X52A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1K7U A;  1P9G A;  7WGA A;  4AML A;  2WGC A;  1ULM A;  4MPI A;  1UHA A;  1WGT A;  1WGC A;  1K7T A;  4WP4 A;  9WGA A;  2UVO A;  1WKX A;  1K7V A;  1Q9B A;  1ULK A;  1HEV A;  2CWG A;  1ULN A;  2DKV A;  2LB7 A;  2X3T A;  1P9Z A;  2X52 A; 
#chains in the Genus database with same CATH topology
 2QPO A;  1CT0 I;  3E59 A;  1SGE I;  1W3S A;  2GKV A;  1P9G A;  1CE3 A;  1XA6 A;  2RC4 A;  2KMP A;  5FUY A;  3OXL A;  2K9H A;  1N13 A;  2WGC A;  2YUU A;  1RFH A;  1SGR I;  1MJB A;  1YU6 C;  2LEO A;  1BMO A;  3OXF A;  1R0R I;  2B0U C;  1CGJ I;  3OVO A;  1R79 A;  1PCE A;  1VDD A;  2N17 A;  2OZU A;  1PTR A;  5JHW C;  2B8T A;  2JA1 A;  1S20 A;  1Q9B A;  2N1A B;  2J87 A;  1SGQ I;  2CWG A;  1TUS A;  1SGY I;  2LB7 A;  2W0T A;  3FSX A;  2X3T A;  3KY9 A;  2QQ0 A;  2SGP I;  3SEK C;  5FUX A;  1TBN A;  3UEY A;  1KMA A;  1LR8 A;  3E2I A;  1K7U A;  1UVF A;  1TBQ R;  5HQ8 A;  4A24 A;  1SGN I;  2KCX A;  1UVG A;  1SGD I;  4AML A;  1Z7K B;  5CCM A;  1HPT A;  2M5X A;  1MT1 A;  2OD1 A;  4GI3 C;  1ULM A;  1OMU A;  2V1C C;  4OVO A;  2ORW A;  1TBR R;  5FUW A;  5CCL A;  2Y0M A;  1H0Z A;  1CT2 I;  1OVO A;  1TBO A;  1FAQ A;  1DS2 I;  2QQD A;  1V1H A;  1BUS A;  1K7T A;  2RIJ A;  2KMO A;  4L9M A;  2NU4 I;  2LUY A;  1CT4 I;  1ULK A;  3R5A A;  1FAR A;  3RU0 A;  1XBT A;  2NU1 I;  1HEV A;  1HJA I;  2VRW B;  2PQ8 A;  2ENN A;  2DKV A;  2QQC A;  1Y1B A;  1CHO I;  5EX3 A;  1YTP A;  1M8C A;  4E1P A;  3R5C A;  1Z2I A;  1IW4 A;  5DAE A;  4SGB I;  5HI7 A;  1PPF I;  1FYB A;  3UGL A;  1LR9 A;  2L8E A;  3TOA A;  2JYY A;  2L7X A;  1WTJ A;  1M8B A;  3SGB I;  5EX0 A;  4UXH A;  7WGA A;  3VE5 A;  2QQE A;  3SGQ I;  1KBE A;  2GKR I;  1MJA A;  2E5R A;  2P6A C;  1X74 A;  4DNC A;  4MPI A;  2ELI A;  2GKT I;  1LR7 A;  1PJU A;  1UHA A;  2J9R A;  2XRC A;  4B6D A;  3D00 A;  5J8F A;  2NU2 I;  3FC3 A;  5E3Q A;  1V1I A;  1MJ9 A;  2E73 A;  2N52 A;  2SGF I;  1X4S A;  3UEJ A;  1TIH A;  3TJQ A;  1TOT A;  3UFF A;  9WGA A;  1WKX A;  2DB6 A;  1K7V A;  1OMT A;  2ENZ A;  2NU3 I;  3QWP A;  1Y1C A;  3R5B A;  4FKD A;  4HGU A;  2F3C I;  1ULN A;  2CJS C;  3TO9 A;  2CWH A;  1SGP I;  2WVJ A;  1P9Z A;  1DS3 I;  2FNF X;  2KMR A;  3OL0 A;  3TOB A;  5FUV A;  3UOE A;  3BJI A;  5E3P A;  2DIP A;  2OVO A;  2SGE I;  2V1C A;  3VDU A;  2ODD A;  2ROW A;  4JCV E;  2OU2 A;  2YQP A;  1FY7 A;  2CWF A;  1IY6 A;  3TO7 A;  3R5D A;  3HH2 C;  3UGD A;  1U5K A;  1KBF A;  1Y8F A;  2BUS A;  1HDL A;  4UXJ A;  2KMQ A;  1TGS I;  3OXG A;  1W4R A;  2N71 A;  2SGD I;  2WCY A;  3MEK A;  3QAH A;  3GOX A;  2GVI A;  2JXD A;  1WGT A;  2JW6 A;  2UZ3 A;  1WGC A;  3VDP A;  1XX6 A;  1CSO I;  3QTL D;  2GIV A;  1PTQ A;  4WP4 A;  3UGI A;  2UVO A;  3PDN A;  1UUC A;  2JZM A;  2NU0 I;  3CXL A;  5E3R A;  1CGI I;  1TUR A;  3TO6 A;  2ERW A;  4UXI A;  2V53 A;  5J8C A;  1NUB A;  1IY5 A;  4E1R A;  3FSY A;  3B4V C;  2X52 A;  2ARP F;  2ORV A;  2SGQ I;  1OYV I;  1NXU A;  2A20 A;  1AN1 I; 
#chains in the Genus database with same CATH homology
 1K7U A;  1P9G A;  7WGA A;  4AML A;  2WGC A;  1ULM A;  4MPI A;  1UHA A;  1WGT A;  1WGC A;  1K7T A;  4WP4 A;  9WGA A;  2UVO A;  1WKX A;  1K7V A;  1Q9B A;  1ULK A;  1HEV A;  2CWG A;  1ULN A;  2DKV A;  2LB7 A;  2X3T A;  1P9Z A;  2X52 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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