2GKRI

Crystal structure of the n-terminally truncated omtky3-del(1-5)
Total Genus 13
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
51
structure length
51
Chain Sequence
b'VDCSEYPKPACTLEYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Structural Insights into the Non-additivity Effects in the Sequence-to-Reactivity Algorithm for Serine Peptidases and their Inhibitors.
pubmed doi rcsb
molecule keywords Ovomucoid
source organism Meleagris gallopavo
molecule tags Hydrolase inhibitor
total genus 13
structure length 51
sequence length 51
ec nomenclature
pdb deposition date 2006-04-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
I PF00050 Kazal_1 Kazal-type serine protease inhibitor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.30 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 2gkrI00
2JYYA 4SGBI 2WCYA 1UVGA 1CGII 1DS2I 3SEKC 4OVOA 2NU1I 2KCXA 4HGUA 3HH2C 1PCEA 1SGRI 1IY5A 2KMRA 2JXDA 1MT1A 2M5XA 2NU2I 1SGYI 1N13A 1OVOA 1IW4A 1CE3A 1CT0I 1LR8A 2N17A 1SGNI 2SGDI 1LR7A 2ERWA 3TJQA 2GKVA 1DS3I 1IY6A 1OYVI 1YU6C 2GKRI 2N52A 2JZMA 1Y1CA 1UUCA 1TUSA 1Y1BA 1SGQI 1M8BA 1KMAA 1NUBA 2LEOA 5JHWC 3SGQI 3OVOA 2SGFI 1SGDI 1TGSI 2P6AC 2ARPF 2N71A 3QTLD 1HPTA 1M8CA 2GKTI 2B0UC 2OVOA 1Z7KB 2KMPA 1BMOA 1CT2I 2V53A 2NU0I 1CHOI 1PPFI 1HJAI 1SGPI 1TIHA 2BUSA 1TBQR 1BUSA 2NU3I 1TURA 2QQDA 2SGPI 1TBRR 5DAEA 1LR9A 2SGEI 1H0ZA 1R0RI 1CGJI 1HDLA 2XRCA 1AN1I 4GI3C 1OMTA 2QQCA 1CT4I 1YTPA 2NU4I 1OMUA 1SGEI 2KMQA 2KMOA 1PJUA 2SGQI 3SGBI 1CSOI 3B4VC 1UVFA 2F3CI 1FYBA
chains in the Genus database with same CATH superfamily
2J87A 2JYYA 4SGBI 2WCYA 1UVGA 1CGII 1DS2I 1PTRA 1RFHA 3PDNA 2NU1I 1XA6A 4OVOA 2KCXA 2L8EA 5FUWA 4HGUA 4L9MA 3HH2C 3TOAA 1WGTA 1PCEA 1Y8FA 1SGRI 3OXFA 5E3QA 1Z2IA 4UXJA 1IY5A 2KMRA 2JXDA 1MT1A 2M5XA 2NU2I 1SGYI 1N13A 1OVOA 1UHAA 3TO6A 1ULNA 4WP4A 1TBOA 1IW4A 1CE3A 2FNFX 2ORWA 2GIVA 3FC3A 1CT0I 1P9ZA 3CXLA 1LR8A 1WTJA 2N17A 1SGNI 2CJSC 2JA1A 2SGDI 2CWGA 5HI7A 2ELIA 2YQPA 1LR7A 3QAHA 2ERWA 1S20A 2ENZA 5FUVA 3TJQA 2GKVA 1DS3I 5EX0A 1IY6A 2E73A 1NXUA 1OYVI 2K9HA 1W3SA 1YU6C 2GKRI 3OXLA 3UEYA 2N52A 2JZMA 2Y0MA 1Y1CA 1UUCA 1TUSA 1Y1BA 1SGQI 3OXGA 1M8BA 1TBNA 1K7UA 2V1CA 4FKDA 5J8FA 1NUBA 2JW6A 2LEOA 1KMAA 5FUXA 5JHWC 3SGQI 5HQ8A 3OVOA 2SGFI 1SGDI 1FY7A 4AMLA 1TGSI 2P6AC 2ARPF 1WKXA 3R5AA 2RIJA 2N71A 3UGDA 2DB6A 2YUUA 2QPOA 2W0TA 1X74A 3QTLD 1TOTA 1U5KA 1HPTA 1WGCA 1M8CA 2GKTI 2B0UC 1HEVA 2OVOA 2OU2A 3VDPA 3R5CA 2DKVA 1Z7KB 2ORVA 2KMPA 3SEKC 1BMOA 2ROWA 1CT2I 2V53A 1VDDA 1KBEA 2QQ0A 3VE5A 2A20A 1R79A 4E1PA 2NU0I 1W4RA 1CHOI 1MJAA 1PPFI 2CWHA 1HJAI 1SGPI 2V1CC 1TIHA 3QWPA 1Q9BA 2L7XA 2UZ3A 3TO7A 2QQEA 3UEJA 5CCLA 2BUSA 2VRWB 2WGCA 9WGAA 1TBQR 1K7TA 3TOBA 1BUSA 2ENNA 2NU3I 1XBTA 1TURA 5CCMA 2QQDA 4E1RA 1V1IA 2GVIA 2ODDA 1TBRR 1ULKA 2SGPI 1LR9A 3KY9A 5DAEA 7WGAA 2SGEI 4JCVE 1H0ZA 4UXHA 1R0RI 1CGJI 1HDLA 2X3TA 2LUYA 1P9GA 2B8TA 3BJIA 3R5BA 5E3PA 4DNCA 2XRCA 1KBFA 3D00A 1MJ9A 1AN1I 3RU0A 3R5DA 2PQ8A 4MPIA 2WVJA 1X4SA 4GI3C 1V1HA 3UGIA 3OL0A 1OMTA 1XX6A 5E3RA 2UVOA 2N1AB 1FYBA 1ULMA 2LB7A 5FUYA 1K7VA 3UFFA 2DIPA 3E59A 2X52A 3FSYA 2OZUA 3FSXA 2QQCA 5EX3A 3VDUA 1CT4I 2CWFA 3E2IA 1MJBA 1YTPA 2NU4I 1OMUA 5J8CA 1SGEI 4B6DA 2KMQA 4A24A 2KMOA 1FAQA 2E5RA 3UOEA 1PJUA 3MEKA 3TO9A 2SGQI 3SGBI 2J9RA 1CSOI 2RC4A 3B4VC 1PTQA 4UXIA 1UVFA 1FARA 2F3CI 3UGLA 2OD1A 3GOXA
chains in the Genus database with same CATH topology
2J87A 2JYYA 4SGBI 2WCYA 1UVGA 1CGII 1DS2I 1PTRA 1RFHA 3PDNA 2NU1I 1XA6A 4OVOA 2KCXA 2L8EA 5FUWA 4HGUA 4L9MA 3HH2C 1PCEA 1Y8FA 1SGRI 3OXFA 4UXJA 1IY5A 2KMRA 2JXDA 1MT1A 2M5XA 2NU2I 1SGYI 1N13A 1OVOA 1IW4A 1TBOA 1CE3A 2FNFX 2ORWA 3FC3A 1CT0I 3CXLA 1LR8A 5HI7A 2N17A 1SGNI 2CJSC 2JA1A 2SGDI 2ELIA 2YQPA 1LR7A 2ERWA 5FUVA 2ENZA 3TJQA 2GKVA 1DS3I 5EX0A 1IY6A 2E73A 1OYVI 2K9HA 1W3SA 1YU6C 2GKRI 3OXLA 3UEYA 2N52A 2JZMA 1Y1CA 1UUCA 1TUSA 1Y1BA 1SGQI 3OXGA 1M8BA 1TBNA 2V1CA 4FKDA 1KMAA 1NUBA 2JW6A 2LEOA 5FUXA 5JHWC 3SGQI 5HQ8A 3OVOA 2SGFI 1SGDI 1TGSI 2P6AC 2ARPF 2N71A 3UGDA 2DB6A 2YUUA 2QPOA 2W0TA 1X74A 3QTLD 1TOTA 1U5KA 1HPTA 1M8CA 2GKTI 2B0UC 2OVOA 3VDPA 1Z7KB 2ORVA 2KMPA 3SEKC 1BMOA 2ROWA 1CT2I 2V53A 1VDDA 1KBEA 2QQ0A 3VE5A 2A20A 1R79A 4E1PA 2NU0I 1CHOI 1W4RA 1PPFI 1HJAI 1SGPI 2V1CC 1TIHA 3QWPA 2UZ3A 2L7XA 2QQEA 3UEJA 5CCLA 2BUSA 2VRWB 1TBQR 1BUSA 2ENNA 2NU3I 1XBTA 1TURA 5CCMA 2QQDA 4E1RA 1V1IA 2GVIA 2ODDA 1TBRR 2SGPI 5DAEA 1LR9A 3KY9A 2SGEI 4JCVE 1H0ZA 4UXHA 1R0RI 1CGJI 1HDLA 2LUYA 2B8TA 3BJIA 2XRCA 1KBFA 3D00A 1AN1I 3RU0A 2WVJA 1X4SA 4GI3C 1V1HA 3UGIA 3OL0A 1OMTA 1XX6A 2N1AB 1FYBA 5FUYA 3UFFA 2DIPA 3E59A 2QQCA 5EX3A 3VDUA 1CT4I 3E2IA 1YTPA 2NU4I 1OMUA 1SGEI 4B6DA 2KMQA 4A24A 2KMOA 1FAQA 2E5RA 1PJUA 3MEKA 2SGQI 3SGBI 2J9RA 1CSOI 3B4VC 4UXIA 1PTQA 3UGLA 1UVFA 1FARA 2F3CI 2OD1A 3GOXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JYY A;  4SGB I;  2WCY A;  1UVG A;  1CGI I;  1DS2 I;  3SEK C;  4OVO A;  2NU1 I;  2KCX A;  4HGU A;  3HH2 C;  1PCE A;  1SGR I;  1IY5 A;  2KMR A;  2JXD A;  1MT1 A;  2M5X A;  2NU2 I;  1SGY I;  1N13 A;  1OVO A;  1IW4 A;  1CE3 A;  1CT0 I;  1LR8 A;  2N17 A;  1SGN I;  2SGD I;  1LR7 A;  2ERW A;  3TJQ A;  2GKV A;  1DS3 I;  1IY6 A;  1OYV I;  1YU6 C;  2GKR I;  2N52 A;  2JZM A;  1Y1C A;  1UUC A;  1TUS A;  1Y1B A;  1SGQ I;  1M8B A;  1KMA A;  1NUB A;  2LEO A;  5JHW C;  3SGQ I;  3OVO A;  2SGF I;  1SGD I;  1TGS I;  2P6A C;  2ARP F;  2N71 A;  3QTL D;  1HPT A;  1M8C A;  2GKT I;  2B0U C;  2OVO A;  1Z7K B;  2KMP A;  1BMO A;  1CT2 I;  2V53 A;  2NU0 I;  1CHO I;  1PPF I;  1HJA I;  1SGP I;  1TIH A;  2BUS A;  1TBQ R;  1BUS A;  2NU3 I;  1TUR A;  2QQD A;  2SGP I;  1TBR R;  5DAE A;  1LR9 A;  2SGE I;  1H0Z A;  1R0R I;  1CGJ I;  1HDL A;  2XRC A;  1AN1 I;  4GI3 C;  1OMT A;  2QQC A;  1CT4 I;  1YTP A;  2NU4 I;  1OMU A;  1SGE I;  2KMQ A;  2KMO A;  1PJU A;  2SGQ I;  3SGB I;  1CSO I;  3B4V C;  1UVF A;  2F3C I;  1FYB A; 
#chains in the Genus database with same CATH topology
 2J87 A;  2JYY A;  4SGB I;  2WCY A;  1UVG A;  1CGI I;  1DS2 I;  1PTR A;  1RFH A;  3PDN A;  2NU1 I;  1XA6 A;  4OVO A;  2KCX A;  2L8E A;  5FUW A;  4HGU A;  4L9M A;  3HH2 C;  3TOA A;  1WGT A;  1PCE A;  1Y8F A;  1SGR I;  3OXF A;  5E3Q A;  1Z2I A;  4UXJ A;  1IY5 A;  2KMR A;  2JXD A;  1MT1 A;  2M5X A;  2NU2 I;  1SGY I;  1N13 A;  1OVO A;  1UHA A;  3TO6 A;  1ULN A;  4WP4 A;  1TBO A;  1IW4 A;  1CE3 A;  2FNF X;  2ORW A;  2GIV A;  3FC3 A;  1CT0 I;  1P9Z A;  3CXL A;  1LR8 A;  1WTJ A;  2N17 A;  1SGN I;  2CJS C;  2JA1 A;  2SGD I;  2CWG A;  5HI7 A;  2ELI A;  2YQP A;  1LR7 A;  3QAH A;  2ERW A;  1S20 A;  2ENZ A;  5FUV A;  3TJQ A;  2GKV A;  1DS3 I;  5EX0 A;  1IY6 A;  2E73 A;  1NXU A;  1OYV I;  2K9H A;  1W3S A;  1YU6 C;  2GKR I;  3OXL A;  3UEY A;  2N52 A;  2JZM A;  2Y0M A;  1Y1C A;  1UUC A;  1TUS A;  1Y1B A;  1SGQ I;  3OXG A;  1M8B A;  1TBN A;  1K7U A;  2V1C A;  4FKD A;  5J8F A;  1NUB A;  2JW6 A;  2LEO A;  1KMA A;  5FUX A;  5JHW C;  3SGQ I;  5HQ8 A;  3OVO A;  2SGF I;  1SGD I;  1FY7 A;  4AML A;  1TGS I;  2P6A C;  2ARP F;  1WKX A;  3R5A A;  2RIJ A;  2N71 A;  3UGD A;  2DB6 A;  2YUU A;  2QPO A;  2W0T A;  1X74 A;  3QTL D;  1TOT A;  1U5K A;  1HPT A;  1WGC A;  1M8C A;  2GKT I;  2B0U C;  1HEV A;  2OVO A;  2OU2 A;  3VDP A;  3R5C A;  2DKV A;  1Z7K B;  2ORV A;  2KMP A;  3SEK C;  1BMO A;  2ROW A;  1CT2 I;  2V53 A;  1VDD A;  1KBE A;  2QQ0 A;  3VE5 A;  2A20 A;  1R79 A;  4E1P A;  2NU0 I;  1W4R A;  1CHO I;  1MJA A;  1PPF I;  2CWH A;  1HJA I;  1SGP I;  2V1C C;  1TIH A;  3QWP A;  1Q9B A;  2L7X A;  2UZ3 A;  3TO7 A;  2QQE A;  3UEJ A;  5CCL A;  2BUS A;  2VRW B;  2WGC A;  9WGA A;  1TBQ R;  1K7T A;  3TOB A;  1BUS A;  2ENN A;  2NU3 I;  1XBT A;  1TUR A;  5CCM A;  2QQD A;  4E1R A;  1V1I A;  2GVI A;  2ODD A;  1TBR R;  1ULK A;  2SGP I;  1LR9 A;  3KY9 A;  5DAE A;  7WGA A;  2SGE I;  4JCV E;  1H0Z A;  4UXH A;  1R0R I;  1CGJ I;  1HDL A;  2X3T A;  2LUY A;  1P9G A;  2B8T A;  3BJI A;  3R5B A;  5E3P A;  4DNC A;  2XRC A;  1KBF A;  3D00 A;  1MJ9 A;  1AN1 I;  3RU0 A;  3R5D A;  2PQ8 A;  4MPI A;  2WVJ A;  1X4S A;  4GI3 C;  1V1H A;  3UGI A;  3OL0 A;  1OMT A;  1XX6 A;  5E3R A;  2UVO A;  2N1A B;  1FYB A;  1ULM A;  2LB7 A;  5FUY A;  1K7V A;  3UFF A;  2DIP A;  3E59 A;  2X52 A;  3FSY A;  2OZU A;  3FSX A;  2QQC A;  5EX3 A;  3VDU A;  1CT4 I;  2CWF A;  3E2I A;  1MJB A;  1YTP A;  2NU4 I;  1OMU A;  5J8C A;  1SGE I;  4B6D A;  2KMQ A;  4A24 A;  2KMO A;  1FAQ A;  2E5R A;  3UOE A;  1PJU A;  3MEK A;  3TO9 A;  2SGQ I;  3SGB I;  2J9R A;  1CSO I;  2RC4 A;  3B4V C;  1PTQ A;  4UXI A;  1UVF A;  1FAR A;  2F3C I;  3UGL A;  2OD1 A;  3GOX A; 
#chains in the Genus database with same CATH homology
 2J87 A;  2JYY A;  4SGB I;  2WCY A;  1UVG A;  1CGI I;  1DS2 I;  1PTR A;  1RFH A;  3PDN A;  2NU1 I;  1XA6 A;  4OVO A;  2KCX A;  2L8E A;  5FUW A;  4HGU A;  4L9M A;  3HH2 C;  1PCE A;  1Y8F A;  1SGR I;  3OXF A;  4UXJ A;  1IY5 A;  2KMR A;  2JXD A;  1MT1 A;  2M5X A;  2NU2 I;  1SGY I;  1N13 A;  1OVO A;  1IW4 A;  1TBO A;  1CE3 A;  2FNF X;  2ORW A;  3FC3 A;  1CT0 I;  3CXL A;  1LR8 A;  5HI7 A;  2N17 A;  1SGN I;  2CJS C;  2JA1 A;  2SGD I;  2ELI A;  2YQP A;  1LR7 A;  2ERW A;  5FUV A;  2ENZ A;  3TJQ A;  2GKV A;  1DS3 I;  5EX0 A;  1IY6 A;  2E73 A;  1OYV I;  2K9H A;  1W3S A;  1YU6 C;  2GKR I;  3OXL A;  3UEY A;  2N52 A;  2JZM A;  1Y1C A;  1UUC A;  1TUS A;  1Y1B A;  1SGQ I;  3OXG A;  1M8B A;  1TBN A;  2V1C A;  4FKD A;  1KMA A;  1NUB A;  2JW6 A;  2LEO A;  5FUX A;  5JHW C;  3SGQ I;  5HQ8 A;  3OVO A;  2SGF I;  1SGD I;  1TGS I;  2P6A C;  2ARP F;  2N71 A;  3UGD A;  2DB6 A;  2YUU A;  2QPO A;  2W0T A;  1X74 A;  3QTL D;  1TOT A;  1U5K A;  1HPT A;  1M8C A;  2GKT I;  2B0U C;  2OVO A;  3VDP A;  1Z7K B;  2ORV A;  2KMP A;  3SEK C;  1BMO A;  2ROW A;  1CT2 I;  2V53 A;  1VDD A;  1KBE A;  2QQ0 A;  3VE5 A;  2A20 A;  1R79 A;  4E1P A;  2NU0 I;  1CHO I;  1W4R A;  1PPF I;  1HJA I;  1SGP I;  2V1C C;  1TIH A;  3QWP A;  2UZ3 A;  2L7X A;  2QQE A;  3UEJ A;  5CCL A;  2BUS A;  2VRW B;  1TBQ R;  1BUS A;  2ENN A;  2NU3 I;  1XBT A;  1TUR A;  5CCM A;  2QQD A;  4E1R A;  1V1I A;  2GVI A;  2ODD A;  1TBR R;  2SGP I;  5DAE A;  1LR9 A;  3KY9 A;  2SGE I;  4JCV E;  1H0Z A;  4UXH A;  1R0R I;  1CGJ I;  1HDL A;  2LUY A;  2B8T A;  3BJI A;  2XRC A;  1KBF A;  3D00 A;  1AN1 I;  3RU0 A;  2WVJ A;  1X4S A;  4GI3 C;  1V1H A;  3UGI A;  3OL0 A;  1OMT A;  1XX6 A;  2N1A B;  1FYB A;  5FUY A;  3UFF A;  2DIP A;  3E59 A;  2QQC A;  5EX3 A;  3VDU A;  1CT4 I;  3E2I A;  1YTP A;  2NU4 I;  1OMU A;  1SGE I;  4B6D A;  2KMQ A;  4A24 A;  2KMO A;  1FAQ A;  2E5R A;  1PJU A;  3MEK A;  2SGQ I;  3SGB I;  2J9R A;  1CSO I;  3B4V C;  4UXI A;  1PTQ A;  3UGL A;  1UVF A;  1FAR A;  2F3C I;  2OD1 A;  3GOX A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...