2GKRI

Crystal structure of the n-terminally truncated omtky3-del(1-5)
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
51
structure length
51
Chain Sequence
VDCSEYPKPACTLEYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Ovomucoid
publication title Structural Insights into the Non-additivity Effects in the Sequence-to-Reactivity Algorithm for Serine Peptidases and their Inhibitors.
pubmed doi rcsb
source organism Meleagris gallopavo
molecule tags Hydrolase inhibitor
total genus 13
structure length 51
sequence length 51
ec nomenclature
pdb deposition date 2006-04-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
I PF00050 Kazal_1 Kazal-type serine protease inhibitor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.30 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 2gkrI00
2V53A 1N13A 2SGDI 1SGNI 2N71A 5DAEA 2SGQI 2NU2I 2SGPI 1TIHA 1TBRR 1HJAI 1OMTA 1BMOA 2JZMA 1LR9A 1PPFI 1AN1I 2M5XA 3TJQA 1BUSA 1YU6C 2OVOA 3HH2C 3SGBI 2ERWA 1LR8A 1OMUA 2WCYA 2NU1I 1CHOI 1CSOI 2GKRI 4OVOA 1SGEI 2ARPF 2NU3I 2SGEI 2KMQA 1UUCA 3SEKC 1R0RI 2N52A 1M8CA 1HPTA 2KMPA 2JXDA 4HGUA 3OVOA 1M8BA 1OVOA 2N17A 1CGII 2NU0I 5JHWC 2B0UC 3B4VC 2JYYA 1PCEA 2XRCA 1H0ZA 3SGQI 1SGPI 2KCXA 1IY6A 4GI3C 1UVGA 2GKVA 1Y1CA 1CE3A 1CGJI 1UVFA 2KMOA 1CT4I 1Y1BA 2P6AC 1KMAA 1HDLA 2QQCA 1LR7A 1NUBA 1PJUA 2KMRA 2LEOA 1OYVI 3QTLD 1SGYI 1TGSI 2BUSA 4SGBI 1TURA 1DS3I 2SGFI 2F3CI 1YTPA 1SGDI 1CT2I 1TBQR 1CT0I 2NU4I 1TUSA 1Z7KB 1MT1A 1SGQI 1SGRI 1DS2I 1IY5A 2QQDA 1IW4A 2GKTI 1FYBA
chains in the Genus database with same CATH superfamily
1RFHA 2V53A 1N13A 2SGDI 1SGNI 2CWGA 3GOXA 3TOBA 2N71A 2W0TA 5DAEA 1PTQA 1MJAA 2SGQI 2J9RA 4E1RA 1K7VA 1W3SA 2X3TA 2NU2I 1ULKA 3MEKA 5FUWA 2DKVA 2FNFX 5HI7A 2SGPI 1TIHA 2L8EA 1W4RA 1HJAI 1OMTA 1BMOA 1TBRR 2JZMA 2OZUA 3E2IA 4AMLA 1LR9A 1PPFI 3FSXA 1AN1I 4A24A 2M5XA 3TJQA 2ROWA 1UHAA 1V1HA 1P9GA 3VDUA 2LUYA 1BUSA 4FKDA 1KBFA 1YU6C 2OVOA 3HH2C 2ELIA 3SGBI 3QWPA 1PTRA 2OD1A 4B6DA 2QPOA 2ERWA 2JA1A 1LR8A 2WVJA 3CXLA 1OMUA 2WCYA 2V1CC 1X4SA 2NU1I 3OXGA 1CHOI 1CSOI 2LB7A 2WGCA 2GKRI 2K9HA 4UXHA 4OVOA 1SGEI 2ARPF 2NU3I 1TBOA 3PDNA 3TO9A 2E73A 2RC4A 2GIVA 1V1IA 2CWFA 3TO7A 5CCMA 1FAQA 2CJSC 5FUVA 3UGIA 1TBNA 2SGEI 1HEVA 1S20A 4E1PA 2KMQA 1X74A 2DIPA 3D00A 2UVOA 7WGAA 1UUCA 5EX0A 5J8FA 2E5RA 3SEKC 1R0RI 1MJBA 1M8CA 2GVIA 2N52A 3TOAA 3TO6A 5J8CA 2N1AB 3R5BA 1HPTA 1TOTA 2KMPA 1FY7A 2JXDA 2YQPA 4HGUA 3OVOA 3UGLA 3UOEA 2JW6A 1U5KA 1M8BA 1OVOA 1P9ZA 2N17A 2VRWB 1CGII 1WKXA 2NU0I 3UEYA 5JHWC 2B0UC 5FUXA 2ENZA 3B4VC 2JYYA 1NXUA 2L7XA 1PCEA 4MPIA 5EX3A 2QQ0A 2XRCA 1H0ZA 5FUYA 1XBTA 3SGQI 1SGPI 3FSYA 2KCXA 1K7UA 1IY6A 4GI3C 2J87A 3QAHA 2PQ8A 1KBEA 4L9MA 4UXJA 1UVGA 3OXFA 2GKVA 3R5DA 1VDDA 1Y1CA 3UGDA 1CE3A 1CGJI 1UVFA 2RIJA 3R5CA 2CWHA 4DNCA 2YUUA 5E3QA 4JCVE 2B8TA 5HQ8A 1ULMA 2KMOA 1CT4I 1Y1BA 2P6AC 1WGCA 1KMAA 1WTJA 1HDLA 2QQCA 1R79A 2OU2A 1LR7A 1FARA 1MJ9A 1NUBA 1PJUA 1WGTA 3OL0A 2KMRA 2LEOA 2ORWA 1OYVI 2A20A 4WP4A 3QTLD 2ORVA 1SGYI 1ULNA 3R5AA 3UEJA 1TGSI 2V1CA 5E3PA 2BUSA 3FC3A 4SGBI 1K7TA 1DS3I 1TURA 2SGFI 2F3CI 1YTPA 1SGDI 1CT2I 4UXIA 5E3RA 3VDPA 1TBQR 9WGAA 2UZ3A 1CT0I 2ENNA 2NU4I 1Y8FA 1TUSA 2X52A 1Z2IA 3OXLA 2QQEA 1XX6A 1Z7KB 3VE5A 2DB6A 3BJIA 3UFFA 1MT1A 1SGQI 1XA6A 3RU0A 1SGRI 1DS2I 1IY5A 2QQDA 1Q9BA 1IW4A 2Y0MA 5CCLA 2GKTI 2ODDA 3KY9A 1FYBA 3E59A
chains in the Genus database with same CATH topology
1RFHA 2V53A 1N13A 2SGDI 1SGNI 3GOXA 2N71A 2W0TA 5DAEA 1PTQA 2SGQI 2J9RA 4E1RA 1W3SA 2NU2I 3MEKA 5FUWA 2FNFX 5HI7A 2SGPI 1TIHA 2L8EA 1TBRR 1HJAI 1OMTA 1BMOA 1W4RA 2JZMA 3E2IA 1LR9A 1PPFI 1AN1I 4A24A 2M5XA 3TJQA 2ROWA 1V1HA 3VDUA 2LUYA 1BUSA 4FKDA 1KBFA 1YU6C 2OVOA 3HH2C 2ELIA 3SGBI 3QWPA 1PTRA 2OD1A 4B6DA 2QPOA 2ERWA 2JA1A 1LR8A 2WVJA 3CXLA 1OMUA 2WCYA 2V1CC 1X4SA 2NU1I 3OXGA 1CHOI 1CSOI 4UXHA 2GKRI 2K9HA 4OVOA 1SGEI 2ARPF 2NU3I 1TBOA 3PDNA 2E73A 1V1IA 5CCMA 1FAQA 2CJSC 5FUVA 3UGIA 1TBNA 2SGEI 4E1PA 2KMQA 1X74A 2DIPA 3D00A 1UUCA 5EX0A 2E5RA 3SEKC 1R0RI 2N52A 1M8CA 2GVIA 2N1AB 1HPTA 1TOTA 2KMPA 2JXDA 2YQPA 4HGUA 3OVOA 3UGLA 2JW6A 1U5KA 1M8BA 1OVOA 2N17A 2VRWB 1CGII 2NU0I 3UEYA 5JHWC 2B0UC 5FUXA 2ENZA 3B4VC 2JYYA 2L7XA 1PCEA 5EX3A 2QQ0A 2XRCA 1H0ZA 5FUYA 1XBTA 3SGQI 1SGPI 2KCXA 1IY6A 4GI3C 2J87A 1KBEA 4L9MA 4UXJA 1UVGA 3OXFA 2GKVA 1Y1CA 1VDDA 3UGDA 1CE3A 1CGJI 1UVFA 2YUUA 5HQ8A 4JCVE 2B8TA 2KMOA 1CT4I 1Y1BA 2P6AC 1KMAA 1HDLA 2QQCA 1R79A 1LR7A 1FARA 1NUBA 1PJUA 3OL0A 2KMRA 2LEOA 2ORWA 1OYVI 2A20A 3QTLD 2ORVA 1SGYI 3UEJA 1TGSI 2V1CA 2BUSA 3FC3A 4SGBI 1TURA 1DS3I 2SGFI 2F3CI 1YTPA 1SGDI 1CT2I 4UXIA 3VDPA 1TBQR 2UZ3A 1CT0I 2ENNA 2NU4I 1Y8FA 1TUSA 3OXLA 2QQEA 1XX6A 1Z7KB 3VE5A 2DB6A 3BJIA 3UFFA 1MT1A 1SGQI 1XA6A 3RU0A 1SGRI 1DS2I 1IY5A 2QQDA 1IW4A 5CCLA 2GKTI 2ODDA 3KY9A 1FYBA 3E59A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2V53 A;  1N13 A;  2SGD I;  1SGN I;  2N71 A;  5DAE A;  2SGQ I;  2NU2 I;  2SGP I;  1TIH A;  1TBR R;  1HJA I;  1OMT A;  1BMO A;  2JZM A;  1LR9 A;  1PPF I;  1AN1 I;  2M5X A;  3TJQ A;  1BUS A;  1YU6 C;  2OVO A;  3HH2 C;  3SGB I;  2ERW A;  1LR8 A;  1OMU A;  2WCY A;  2NU1 I;  1CHO I;  1CSO I;  2GKR I;  4OVO A;  1SGE I;  2ARP F;  2NU3 I;  2SGE I;  2KMQ A;  1UUC A;  3SEK C;  1R0R I;  2N52 A;  1M8C A;  1HPT A;  2KMP A;  2JXD A;  4HGU A;  3OVO A;  1M8B A;  1OVO A;  2N17 A;  1CGI I;  2NU0 I;  5JHW C;  2B0U C;  3B4V C;  2JYY A;  1PCE A;  2XRC A;  1H0Z A;  3SGQ I;  1SGP I;  2KCX A;  1IY6 A;  4GI3 C;  1UVG A;  2GKV A;  1Y1C A;  1CE3 A;  1CGJ I;  1UVF A;  2KMO A;  1CT4 I;  1Y1B A;  2P6A C;  1KMA A;  1HDL A;  2QQC A;  1LR7 A;  1NUB A;  1PJU A;  2KMR A;  2LEO A;  1OYV I;  3QTL D;  1SGY I;  1TGS I;  2BUS A;  4SGB I;  1TUR A;  1DS3 I;  2SGF I;  2F3C I;  1YTP A;  1SGD I;  1CT2 I;  1TBQ R;  1CT0 I;  2NU4 I;  1TUS A;  1Z7K B;  1MT1 A;  1SGQ I;  1SGR I;  1DS2 I;  1IY5 A;  2QQD A;  1IW4 A;  2GKT I;  1FYB A; 
#chains in the Genus database with same CATH topology
 1RFH A;  2V53 A;  1N13 A;  2SGD I;  1SGN I;  2CWG A;  3GOX A;  3TOB A;  2N71 A;  2W0T A;  5DAE A;  1PTQ A;  1MJA A;  2SGQ I;  2J9R A;  4E1R A;  1K7V A;  1W3S A;  2X3T A;  2NU2 I;  1ULK A;  3MEK A;  5FUW A;  2DKV A;  2FNF X;  5HI7 A;  2SGP I;  1TIH A;  2L8E A;  1W4R A;  1HJA I;  1OMT A;  1BMO A;  1TBR R;  2JZM A;  2OZU A;  3E2I A;  4AML A;  1LR9 A;  1PPF I;  3FSX A;  1AN1 I;  4A24 A;  2M5X A;  3TJQ A;  2ROW A;  1UHA A;  1V1H A;  1P9G A;  3VDU A;  2LUY A;  1BUS A;  4FKD A;  1KBF A;  1YU6 C;  2OVO A;  3HH2 C;  2ELI A;  3SGB I;  3QWP A;  1PTR A;  2OD1 A;  4B6D A;  2QPO A;  2ERW A;  2JA1 A;  1LR8 A;  2WVJ A;  3CXL A;  1OMU A;  2WCY A;  2V1C C;  1X4S A;  2NU1 I;  3OXG A;  1CHO I;  1CSO I;  2LB7 A;  2WGC A;  2GKR I;  2K9H A;  4UXH A;  4OVO A;  1SGE I;  2ARP F;  2NU3 I;  1TBO A;  3PDN A;  3TO9 A;  2E73 A;  2RC4 A;  2GIV A;  1V1I A;  2CWF A;  3TO7 A;  5CCM A;  1FAQ A;  2CJS C;  5FUV A;  3UGI A;  1TBN A;  2SGE I;  1HEV A;  1S20 A;  4E1P A;  2KMQ A;  1X74 A;  2DIP A;  3D00 A;  2UVO A;  7WGA A;  1UUC A;  5EX0 A;  5J8F A;  2E5R A;  3SEK C;  1R0R I;  1MJB A;  1M8C A;  2GVI A;  2N52 A;  3TOA A;  3TO6 A;  5J8C A;  2N1A B;  3R5B A;  1HPT A;  1TOT A;  2KMP A;  1FY7 A;  2JXD A;  2YQP A;  4HGU A;  3OVO A;  3UGL A;  3UOE A;  2JW6 A;  1U5K A;  1M8B A;  1OVO A;  1P9Z A;  2N17 A;  2VRW B;  1CGI I;  1WKX A;  2NU0 I;  3UEY A;  5JHW C;  2B0U C;  5FUX A;  2ENZ A;  3B4V C;  2JYY A;  1NXU A;  2L7X A;  1PCE A;  4MPI A;  5EX3 A;  2QQ0 A;  2XRC A;  1H0Z A;  5FUY A;  1XBT A;  3SGQ I;  1SGP I;  3FSY A;  2KCX A;  1K7U A;  1IY6 A;  4GI3 C;  2J87 A;  3QAH A;  2PQ8 A;  1KBE A;  4L9M A;  4UXJ A;  1UVG A;  3OXF A;  2GKV A;  3R5D A;  1VDD A;  1Y1C A;  3UGD A;  1CE3 A;  1CGJ I;  1UVF A;  2RIJ A;  3R5C A;  2CWH A;  4DNC A;  2YUU A;  5E3Q A;  4JCV E;  2B8T A;  5HQ8 A;  1ULM A;  2KMO A;  1CT4 I;  1Y1B A;  2P6A C;  1WGC A;  1KMA A;  1WTJ A;  1HDL A;  2QQC A;  1R79 A;  2OU2 A;  1LR7 A;  1FAR A;  1MJ9 A;  1NUB A;  1PJU A;  1WGT A;  3OL0 A;  2KMR A;  2LEO A;  2ORW A;  1OYV I;  2A20 A;  4WP4 A;  3QTL D;  2ORV A;  1SGY I;  1ULN A;  3R5A A;  3UEJ A;  1TGS I;  2V1C A;  5E3P A;  2BUS A;  3FC3 A;  4SGB I;  1K7T A;  1DS3 I;  1TUR A;  2SGF I;  2F3C I;  1YTP A;  1SGD I;  1CT2 I;  4UXI A;  5E3R A;  3VDP A;  1TBQ R;  9WGA A;  2UZ3 A;  1CT0 I;  2ENN A;  2NU4 I;  1Y8F A;  1TUS A;  2X52 A;  1Z2I A;  3OXL A;  2QQE A;  1XX6 A;  1Z7K B;  3VE5 A;  2DB6 A;  3BJI A;  3UFF A;  1MT1 A;  1SGQ I;  1XA6 A;  3RU0 A;  1SGR I;  1DS2 I;  1IY5 A;  2QQD A;  1Q9B A;  1IW4 A;  2Y0M A;  5CCL A;  2GKT I;  2ODD A;  3KY9 A;  1FYB A;  3E59 A; 
#chains in the Genus database with same CATH homology
 1RFH A;  2V53 A;  1N13 A;  2SGD I;  1SGN I;  3GOX A;  2N71 A;  2W0T A;  5DAE A;  1PTQ A;  2SGQ I;  2J9R A;  4E1R A;  1W3S A;  2NU2 I;  3MEK A;  5FUW A;  2FNF X;  5HI7 A;  2SGP I;  1TIH A;  2L8E A;  1TBR R;  1HJA I;  1OMT A;  1BMO A;  1W4R A;  2JZM A;  3E2I A;  1LR9 A;  1PPF I;  1AN1 I;  4A24 A;  2M5X A;  3TJQ A;  2ROW A;  1V1H A;  3VDU A;  2LUY A;  1BUS A;  4FKD A;  1KBF A;  1YU6 C;  2OVO A;  3HH2 C;  2ELI A;  3SGB I;  3QWP A;  1PTR A;  2OD1 A;  4B6D A;  2QPO A;  2ERW A;  2JA1 A;  1LR8 A;  2WVJ A;  3CXL A;  1OMU A;  2WCY A;  2V1C C;  1X4S A;  2NU1 I;  3OXG A;  1CHO I;  1CSO I;  4UXH A;  2GKR I;  2K9H A;  4OVO A;  1SGE I;  2ARP F;  2NU3 I;  1TBO A;  3PDN A;  2E73 A;  1V1I A;  5CCM A;  1FAQ A;  2CJS C;  5FUV A;  3UGI A;  1TBN A;  2SGE I;  4E1P A;  2KMQ A;  1X74 A;  2DIP A;  3D00 A;  1UUC A;  5EX0 A;  2E5R A;  3SEK C;  1R0R I;  2N52 A;  1M8C A;  2GVI A;  2N1A B;  1HPT A;  1TOT A;  2KMP A;  2JXD A;  2YQP A;  4HGU A;  3OVO A;  3UGL A;  2JW6 A;  1U5K A;  1M8B A;  1OVO A;  2N17 A;  2VRW B;  1CGI I;  2NU0 I;  3UEY A;  5JHW C;  2B0U C;  5FUX A;  2ENZ A;  3B4V C;  2JYY A;  2L7X A;  1PCE A;  5EX3 A;  2QQ0 A;  2XRC A;  1H0Z A;  5FUY A;  1XBT A;  3SGQ I;  1SGP I;  2KCX A;  1IY6 A;  4GI3 C;  2J87 A;  1KBE A;  4L9M A;  4UXJ A;  1UVG A;  3OXF A;  2GKV A;  1Y1C A;  1VDD A;  3UGD A;  1CE3 A;  1CGJ I;  1UVF A;  2YUU A;  5HQ8 A;  4JCV E;  2B8T A;  2KMO A;  1CT4 I;  1Y1B A;  2P6A C;  1KMA A;  1HDL A;  2QQC A;  1R79 A;  1LR7 A;  1FAR A;  1NUB A;  1PJU A;  3OL0 A;  2KMR A;  2LEO A;  2ORW A;  1OYV I;  2A20 A;  3QTL D;  2ORV A;  1SGY I;  3UEJ A;  1TGS I;  2V1C A;  2BUS A;  3FC3 A;  4SGB I;  1TUR A;  1DS3 I;  2SGF I;  2F3C I;  1YTP A;  1SGD I;  1CT2 I;  4UXI A;  3VDP A;  1TBQ R;  2UZ3 A;  1CT0 I;  2ENN A;  2NU4 I;  1Y8F A;  1TUS A;  3OXL A;  2QQE A;  1XX6 A;  1Z7K B;  3VE5 A;  2DB6 A;  3BJI A;  3UFF A;  1MT1 A;  1SGQ I;  1XA6 A;  3RU0 A;  1SGR I;  1DS2 I;  1IY5 A;  2QQD A;  1IW4 A;  5CCL A;  2GKT I;  2ODD A;  3KY9 A;  1FYB A;  3E59 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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