1CT4I

Crystal structure of the omtky3 p1 variant omtky3-val18i in complex with sgpb
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
51
structure length
51
Chain Sequence
VDCSEYPKPACTVEYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/hydrolase inhibitor
source organism Meleagris gallopavo
publication title Deleterious effects of beta-branched residues in the S1 specificity pocket of Streptomyces griseus proteinase B (SGPB): crystal structures of the turkey ovomucoid third domain variants Ile18I, Val18I, Thr18I, and Ser18I in complex with SGPB.
pubmed rcsb
molecule keywords PROTEINASE B
total genus 13
structure length 51
sequence length 51
ec nomenclature
pdb deposition date 1999-08-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
I PF00050 Kazal_1 Kazal-type serine protease inhibitor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.30 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 1ct4I00
3SGBI 3QTLD 1OMTA 2M5XA 1YTPA 2SGDI 2NU0I 1TUSA 2XRCA 2JYYA 2NU3I 2JZMA 2P6AC 1CGJI 2SGFI 1LR9A 1KMAA 1BUSA 2V53A 1OYVI 2NU2I 2N17A 2B0UC 2JXDA 1Z7KB 2SGPI 4OVOA 1DS3I 5DAEA 4HGUA 1CT2I 2ARPF 1PCEA 1MT1A 2GKVA 3TJQA 1LR7A 1CT4I 1CSOI 1Y1CA 1R0RI 2QQCA 3B4VC 1SGDI 1SGNI 2KMQA 1FYBA 3OVOA 1OMUA 2F3CI 1PJUA 1TURA 1SGYI 1Y1BA 1CGII 2BUSA 1M8CA 1LR8A 1SGPI 2ERWA 3SEKC 1BMOA 1IY5A 5JHWC 1OVOA 1SGRI 2GKRI 2WCYA 3SGQI 2SGQI 2OVOA 4GI3C 1HJAI 2KCXA 1SGQI 2N52A 1TIHA 1HDLA 2N71A 1TGSI 1TBQR 4SGBI 1UVGA 1CE3A 1PPFI 1CT0I 1UUCA 1YU6C 1TBRR 1HPTA 1IW4A 2SGEI 2KMRA 2QQDA 1IY6A 1M8BA 1CHOI 2NU4I 1NUBA 1UVFA 3HH2C 2KMOA 1SGEI 1DS2I 2KMPA 1H0ZA 2LEOA 2GKTI 1N13A 2NU1I 1AN1I
chains in the Genus database with same CATH superfamily
3SGBI 3QTLD 1W4RA 1OMTA 2M5XA 1YTPA 2SGDI 2V1CA 5J8FA 2NU0I 1RFHA 2Y0MA 2UZ3A 1TUSA 1TBOA 1X4SA 4FKDA 2LUYA 2XRCA 2JYYA 1PTRA 2NU3I 2QQ0A 1TBNA 2QQEA 4L9MA 2JZMA 2P6AC 2X52A 1CGJI 2SGFI 3PDNA 3MEKA 1LR9A 2CWHA 2LB7A 1KMAA 3TO9A 1MJ9A 2QPOA 4AMLA 3BJIA 3R5CA 2FNFX 1BUSA 2YQPA 2WVJA 1R79A 2V53A 1MJBA 5FUWA 2CWFA 1OYVI 2DB6A 2NU2I 5HQ8A 2N17A 5E3PA 3TOBA 2L8EA 2ENZA 5CCLA 2B0UC 2JXDA 1Z7KB 2SGPI 4OVOA 2E73A 1DS3I 2ROWA 2N1AB 5DAEA 5E3RA 4HGUA 2OU2A 1CT2I 2ARPF 1PCEA 1MT1A 7WGAA 3QAHA 2CWGA 2GKVA 3UGDA 4DNCA 3TJQA 2K9HA 1LR7A 1WKXA 5J8CA 3TO6A 2E5RA 1CT4I 1CSOI 3TO7A 1Q9BA 4JCVE 1VDDA 2VRWB 1Y1CA 2PQ8A 1NXUA 1X74A 3FC3A 1R0RI 2B8TA 2QQCA 1V1IA 3B4VC 1K7TA 3R5AA 1PTQA 1SGDI 3OXFA 2X3TA 1SGNI 2KMQA 4B6DA 2ENNA 1FARA 1Y8FA 1FYBA 3OVOA 1OMUA 2F3CI 1PJUA 2OZUA 1V1HA 1WGTA 1TURA 3VDPA 1SGYI 1Y1BA 1CGII 3E59A 2BUSA 1M8CA 1LR8A 1SGPI 2ERWA 5FUYA 3KY9A 5EX3A 1BMOA 3SEKC 3UEYA 2J87A 1IY5A 2A20A 5JHWC 4E1RA 1KBEA 1OVOA 1SGRI 1MJAA 3FSXA 2GVIA 3OXLA 4MPIA 1K7UA 2GKRI 1Z2IA 1U5KA 2ORWA 2WCYA 5FUXA 3D00A 2UVOA 1ULMA 3SGQI 3GOXA 2SGQI 2OVOA 1TOTA 4GI3C 3UFFA 1HJAI 1UHAA 1XA6A 2KCXA 1SGQI 2N52A 1TIHA 2ODDA 3FSYA 1HDLA 2N71A 1TGSI 2RC4A 1TBQR 2RIJA 4SGBI 1K7VA 5HI7A 1FAQA 2YUUA 1UVGA 2ELIA 1CE3A 4E1PA 1PPFI 1KBFA 1CT0I 1S20A 1UUCA 1YU6C 1WTJA 5CCMA 1P9GA 3UOEA 1TBRR 1HPTA 1ULNA 1XX6A 2CJSC 3OL0A 1P9ZA 4UXIA 5E3QA 3UEJA 1IW4A 2L7XA 3UGLA 3RU0A 3UGIA 1W3SA 1XBTA 2GIVA 3VDUA 9WGAA 3TOAA 2SGEI 3VE5A 4A24A 2KMRA 2QQDA 1IY6A 1M8BA 2JW6A 1CHOI 2W0TA 2NU4I 4UXHA 3CXLA 1NUBA 1UVFA 3HH2C 4WP4A 5EX0A 2KMOA 1SGEI 3R5DA 4UXJA 1DS2I 1ULKA 2KMPA 3QWPA 2V1CC 2DKVA 2DIPA 5FUVA 3OXGA 1FY7A 2OD1A 2ORVA 1H0ZA 1HEVA 2LEOA 2WGCA 1WGCA 2GKTI 2J9RA 3E2IA 3R5BA 1N13A 2JA1A 2NU1I 1AN1I
chains in the Genus database with same CATH topology
3SGBI 3QTLD 1W4RA 1OMTA 2M5XA 1YTPA 2SGDI 2V1CA 2NU0I 1RFHA 2UZ3A 1TUSA 1TBOA 1X4SA 4FKDA 2LUYA 2XRCA 2JYYA 1PTRA 2NU3I 2QQ0A 1TBNA 2QQEA 4L9MA 2JZMA 2P6AC 1CGJI 2SGFI 3PDNA 3MEKA 1LR9A 1KMAA 2QPOA 3BJIA 2FNFX 1BUSA 2YQPA 2WVJA 1R79A 2V53A 5FUWA 1OYVI 2DB6A 2NU2I 5HQ8A 2N17A 2L8EA 2ENZA 5CCLA 2B0UC 2JXDA 1Z7KB 2SGPI 4OVOA 2E73A 1DS3I 2ROWA 2N1AB 5DAEA 4HGUA 1CT2I 2ARPF 1PCEA 1MT1A 2GKVA 3UGDA 3TJQA 2K9HA 1LR7A 2E5RA 1CT4I 1CSOI 4JCVE 1VDDA 2VRWB 1Y1CA 1X74A 3FC3A 1R0RI 2B8TA 2QQCA 1V1IA 3B4VC 1PTQA 1SGDI 3OXFA 1SGNI 2KMQA 4B6DA 2ENNA 1FARA 1Y8FA 1FYBA 3OVOA 1OMUA 2F3CI 1PJUA 1V1HA 1TURA 3VDPA 1SGYI 1Y1BA 1CGII 3E59A 2BUSA 1M8CA 1LR8A 1SGPI 2ERWA 5FUYA 3KY9A 5EX3A 1BMOA 3SEKC 3UEYA 2J87A 1IY5A 2A20A 5JHWC 4E1RA 1KBEA 1OVOA 1SGRI 3OXLA 2GVIA 2GKRI 2ORWA 1U5KA 2WCYA 5FUXA 3D00A 3GOXA 3SGQI 2SGQI 2OVOA 1TOTA 4GI3C 3UFFA 1HJAI 1XA6A 2KCXA 1SGQI 2N52A 1TIHA 2ODDA 1HDLA 2N71A 1TGSI 1TBQR 4SGBI 5HI7A 1FAQA 2YUUA 1UVGA 2ELIA 1CE3A 4E1PA 1PPFI 1KBFA 1CT0I 1UUCA 1YU6C 5CCMA 1TBRR 1HPTA 2CJSC 1XX6A 4UXIA 3OL0A 3UEJA 1IW4A 2L7XA 3UGLA 3RU0A 3UGIA 1W3SA 1XBTA 3VDUA 3VE5A 2SGEI 4A24A 2KMRA 2QQDA 1IY6A 1M8BA 2JW6A 1CHOI 2W0TA 2NU4I 4UXHA 3CXLA 1NUBA 1UVFA 3HH2C 5EX0A 2KMOA 1SGEI 4UXJA 1DS2I 2KMPA 3QWPA 2V1CC 5FUVA 2DIPA 3OXGA 2OD1A 1H0ZA 2ORVA 2LEOA 3E2IA 2GKTI 2J9RA 1N13A 2JA1A 2NU1I 1AN1I
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SGB I;  3QTL D;  1OMT A;  2M5X A;  1YTP A;  2SGD I;  2NU0 I;  1TUS A;  2XRC A;  2JYY A;  2NU3 I;  2JZM A;  2P6A C;  1CGJ I;  2SGF I;  1LR9 A;  1KMA A;  1BUS A;  2V53 A;  1OYV I;  2NU2 I;  2N17 A;  2B0U C;  2JXD A;  1Z7K B;  2SGP I;  4OVO A;  1DS3 I;  5DAE A;  4HGU A;  1CT2 I;  2ARP F;  1PCE A;  1MT1 A;  2GKV A;  3TJQ A;  1LR7 A;  1CT4 I;  1CSO I;  1Y1C A;  1R0R I;  2QQC A;  3B4V C;  1SGD I;  1SGN I;  2KMQ A;  1FYB A;  3OVO A;  1OMU A;  2F3C I;  1PJU A;  1TUR A;  1SGY I;  1Y1B A;  1CGI I;  2BUS A;  1M8C A;  1LR8 A;  1SGP I;  2ERW A;  3SEK C;  1BMO A;  1IY5 A;  5JHW C;  1OVO A;  1SGR I;  2GKR I;  2WCY A;  3SGQ I;  2SGQ I;  2OVO A;  4GI3 C;  1HJA I;  2KCX A;  1SGQ I;  2N52 A;  1TIH A;  1HDL A;  2N71 A;  1TGS I;  1TBQ R;  4SGB I;  1UVG A;  1CE3 A;  1PPF I;  1CT0 I;  1UUC A;  1YU6 C;  1TBR R;  1HPT A;  1IW4 A;  2SGE I;  2KMR A;  2QQD A;  1IY6 A;  1M8B A;  1CHO I;  2NU4 I;  1NUB A;  1UVF A;  3HH2 C;  2KMO A;  1SGE I;  1DS2 I;  2KMP A;  1H0Z A;  2LEO A;  2GKT I;  1N13 A;  2NU1 I;  1AN1 I; 
#chains in the Genus database with same CATH topology
 3SGB I;  3QTL D;  1W4R A;  1OMT A;  2M5X A;  1YTP A;  2SGD I;  2V1C A;  5J8F A;  2NU0 I;  1RFH A;  2Y0M A;  2UZ3 A;  1TUS A;  1TBO A;  1X4S A;  4FKD A;  2LUY A;  2XRC A;  2JYY A;  1PTR A;  2NU3 I;  2QQ0 A;  1TBN A;  2QQE A;  4L9M A;  2JZM A;  2P6A C;  2X52 A;  1CGJ I;  2SGF I;  3PDN A;  3MEK A;  1LR9 A;  2CWH A;  2LB7 A;  1KMA A;  3TO9 A;  1MJ9 A;  2QPO A;  4AML A;  3BJI A;  3R5C A;  2FNF X;  1BUS A;  2YQP A;  2WVJ A;  1R79 A;  2V53 A;  1MJB A;  5FUW A;  2CWF A;  1OYV I;  2DB6 A;  2NU2 I;  5HQ8 A;  2N17 A;  5E3P A;  3TOB A;  2L8E A;  2ENZ A;  5CCL A;  2B0U C;  2JXD A;  1Z7K B;  2SGP I;  4OVO A;  2E73 A;  1DS3 I;  2ROW A;  2N1A B;  5DAE A;  5E3R A;  4HGU A;  2OU2 A;  1CT2 I;  2ARP F;  1PCE A;  1MT1 A;  7WGA A;  3QAH A;  2CWG A;  2GKV A;  3UGD A;  4DNC A;  3TJQ A;  2K9H A;  1LR7 A;  1WKX A;  5J8C A;  3TO6 A;  2E5R A;  1CT4 I;  1CSO I;  3TO7 A;  1Q9B A;  4JCV E;  1VDD A;  2VRW B;  1Y1C A;  2PQ8 A;  1NXU A;  1X74 A;  3FC3 A;  1R0R I;  2B8T A;  2QQC A;  1V1I A;  3B4V C;  1K7T A;  3R5A A;  1PTQ A;  1SGD I;  3OXF A;  2X3T A;  1SGN I;  2KMQ A;  4B6D A;  2ENN A;  1FAR A;  1Y8F A;  1FYB A;  3OVO A;  1OMU A;  2F3C I;  1PJU A;  2OZU A;  1V1H A;  1WGT A;  1TUR A;  3VDP A;  1SGY I;  1Y1B A;  1CGI I;  3E59 A;  2BUS A;  1M8C A;  1LR8 A;  1SGP I;  2ERW A;  5FUY A;  3KY9 A;  5EX3 A;  1BMO A;  3SEK C;  3UEY A;  2J87 A;  1IY5 A;  2A20 A;  5JHW C;  4E1R A;  1KBE A;  1OVO A;  1SGR I;  1MJA A;  3FSX A;  2GVI A;  3OXL A;  4MPI A;  1K7U A;  2GKR I;  1Z2I A;  1U5K A;  2ORW A;  2WCY A;  5FUX A;  3D00 A;  2UVO A;  1ULM A;  3SGQ I;  3GOX A;  2SGQ I;  2OVO A;  1TOT A;  4GI3 C;  3UFF A;  1HJA I;  1UHA A;  1XA6 A;  2KCX A;  1SGQ I;  2N52 A;  1TIH A;  2ODD A;  3FSY A;  1HDL A;  2N71 A;  1TGS I;  2RC4 A;  1TBQ R;  2RIJ A;  4SGB I;  1K7V A;  5HI7 A;  1FAQ A;  2YUU A;  1UVG A;  2ELI A;  1CE3 A;  4E1P A;  1PPF I;  1KBF A;  1CT0 I;  1S20 A;  1UUC A;  1YU6 C;  1WTJ A;  5CCM A;  1P9G A;  3UOE A;  1TBR R;  1HPT A;  1ULN A;  1XX6 A;  2CJS C;  3OL0 A;  1P9Z A;  4UXI A;  5E3Q A;  3UEJ A;  1IW4 A;  2L7X A;  3UGL A;  3RU0 A;  3UGI A;  1W3S A;  1XBT A;  2GIV A;  3VDU A;  9WGA A;  3TOA A;  2SGE I;  3VE5 A;  4A24 A;  2KMR A;  2QQD A;  1IY6 A;  1M8B A;  2JW6 A;  1CHO I;  2W0T A;  2NU4 I;  4UXH A;  3CXL A;  1NUB A;  1UVF A;  3HH2 C;  4WP4 A;  5EX0 A;  2KMO A;  1SGE I;  3R5D A;  4UXJ A;  1DS2 I;  1ULK A;  2KMP A;  3QWP A;  2V1C C;  2DKV A;  2DIP A;  5FUV A;  3OXG A;  1FY7 A;  2OD1 A;  2ORV A;  1H0Z A;  1HEV A;  2LEO A;  2WGC A;  1WGC A;  2GKT I;  2J9R A;  3E2I A;  3R5B A;  1N13 A;  2JA1 A;  2NU1 I;  1AN1 I; 
#chains in the Genus database with same CATH homology
 3SGB I;  3QTL D;  1W4R A;  1OMT A;  2M5X A;  1YTP A;  2SGD I;  2V1C A;  2NU0 I;  1RFH A;  2UZ3 A;  1TUS A;  1TBO A;  1X4S A;  4FKD A;  2LUY A;  2XRC A;  2JYY A;  1PTR A;  2NU3 I;  2QQ0 A;  1TBN A;  2QQE A;  4L9M A;  2JZM A;  2P6A C;  1CGJ I;  2SGF I;  3PDN A;  3MEK A;  1LR9 A;  1KMA A;  2QPO A;  3BJI A;  2FNF X;  1BUS A;  2YQP A;  2WVJ A;  1R79 A;  2V53 A;  5FUW A;  1OYV I;  2DB6 A;  2NU2 I;  5HQ8 A;  2N17 A;  2L8E A;  2ENZ A;  5CCL A;  2B0U C;  2JXD A;  1Z7K B;  2SGP I;  4OVO A;  2E73 A;  1DS3 I;  2ROW A;  2N1A B;  5DAE A;  4HGU A;  1CT2 I;  2ARP F;  1PCE A;  1MT1 A;  2GKV A;  3UGD A;  3TJQ A;  2K9H A;  1LR7 A;  2E5R A;  1CT4 I;  1CSO I;  4JCV E;  1VDD A;  2VRW B;  1Y1C A;  1X74 A;  3FC3 A;  1R0R I;  2B8T A;  2QQC A;  1V1I A;  3B4V C;  1PTQ A;  1SGD I;  3OXF A;  1SGN I;  2KMQ A;  4B6D A;  2ENN A;  1FAR A;  1Y8F A;  1FYB A;  3OVO A;  1OMU A;  2F3C I;  1PJU A;  1V1H A;  1TUR A;  3VDP A;  1SGY I;  1Y1B A;  1CGI I;  3E59 A;  2BUS A;  1M8C A;  1LR8 A;  1SGP I;  2ERW A;  5FUY A;  3KY9 A;  5EX3 A;  1BMO A;  3SEK C;  3UEY A;  2J87 A;  1IY5 A;  2A20 A;  5JHW C;  4E1R A;  1KBE A;  1OVO A;  1SGR I;  3OXL A;  2GVI A;  2GKR I;  2ORW A;  1U5K A;  2WCY A;  5FUX A;  3D00 A;  3GOX A;  3SGQ I;  2SGQ I;  2OVO A;  1TOT A;  4GI3 C;  3UFF A;  1HJA I;  1XA6 A;  2KCX A;  1SGQ I;  2N52 A;  1TIH A;  2ODD A;  1HDL A;  2N71 A;  1TGS I;  1TBQ R;  4SGB I;  5HI7 A;  1FAQ A;  2YUU A;  1UVG A;  2ELI A;  1CE3 A;  4E1P A;  1PPF I;  1KBF A;  1CT0 I;  1UUC A;  1YU6 C;  5CCM A;  1TBR R;  1HPT A;  2CJS C;  1XX6 A;  4UXI A;  3OL0 A;  3UEJ A;  1IW4 A;  2L7X A;  3UGL A;  3RU0 A;  3UGI A;  1W3S A;  1XBT A;  3VDU A;  3VE5 A;  2SGE I;  4A24 A;  2KMR A;  2QQD A;  1IY6 A;  1M8B A;  2JW6 A;  1CHO I;  2W0T A;  2NU4 I;  4UXH A;  3CXL A;  1NUB A;  1UVF A;  3HH2 C;  5EX0 A;  2KMO A;  1SGE I;  4UXJ A;  1DS2 I;  2KMP A;  3QWP A;  2V1C C;  5FUV A;  2DIP A;  3OXG A;  2OD1 A;  1H0Z A;  2ORV A;  2LEO A;  3E2I A;  2GKT I;  2J9R A;  1N13 A;  2JA1 A;  2NU1 I;  1AN1 I; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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