1CT4I

Crystal structure of the omtky3 p1 variant omtky3-val18i in complex with sgpb
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
51
structure length
51
Chain Sequence
b'VDCSEYPKPACTVEYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Deleterious effects of beta-branched residues in the S1 specificity pocket of Streptomyces griseus proteinase B (SGPB): crystal structures of the turkey ovomucoid third domain variants Ile18I, Val18I, Thr18I, and Ser18I in complex with SGPB.
pubmed rcsb
molecule keywords PROTEINASE B
source organism Meleagris gallopavo
molecule tags Hydrolase/hydrolase inhibitor
total genus 13
structure length 51
sequence length 51
ec nomenclature
pdb deposition date 1999-08-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
I PF00050 Kazal_1 Kazal-type serine protease inhibitor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.30 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 1ct4I00
3TJQA 2GKTI 1SGRI 2NU1I 2JZMA 1SGDI 2B0UC 1NUBA 1CE3A 2SGQI 1H0ZA 3QTLD 2N52A 1FYBA 1Z7KB 1CSOI 1SGQI 1OMTA 2GKRI 1OVOA 1BMOA 5DAEA 1LR9A 1DS3I 2GKVA 3SGQI 1HDLA 1TUSA 1HJAI 1MT1A 4SGBI 1M8BA 2KMOA 1TBRR 2NU3I 2F3CI 1IY5A 2LEOA 3SEKC 1TIHA 2JYYA 2XRCA 1IY6A 1CT2I 1CGJI 1CHOI 1CT0I 1AN1I 1UUCA 1UVGA 2JXDA 1SGNI 2QQDA 4GI3C 1Y1CA 1PJUA 4OVOA 2WCYA 1TURA 1CGII 2KCXA 2SGDI 2NU0I 1PPFI 2P6AC 2ARPF 1M8CA 1CT4I 2NU4I 1YU6C 1IW4A 1UVFA 1BUSA 2N71A 1KMAA 2M5XA 2KMRA 1OMUA 1OYVI 1YTPA 1TGSI 1SGYI 4HGUA 2V53A 5JHWC 2NU2I 1N13A 2KMQA 2N17A 2OVOA 1PCEA 3B4VC 2SGEI 2QQCA 3HH2C 1HPTA 1LR8A 1Y1BA 3SGBI 1SGEI 1LR7A 1R0RI 3OVOA 2BUSA 2ERWA 2KMPA 2SGPI 1DS2I 1TBQR 1SGPI 2SGFI
chains in the Genus database with same CATH superfamily
3TJQA 3UGIA 3TO6A 2FNFX 1ULNA 1XBTA 1SGRI 2GKTI 2A20A 2DIPA 2N1AB 3PDNA 1PTQA 2NU1I 5CCMA 1FARA 2JZMA 3TO9A 2V1CA 3CXLA 1SGDI 1RFHA 2B0UC 5FUYA 3VDUA 1NUBA 1CE3A 2E73A 1UHAA 2SGQI 1Q9BA 2E5RA 3QTLD 1H0ZA 2N52A 1FYBA 1Z7KB 3FSXA 2CJSC 1CSOI 1KBEA 1SGQI 1OMTA 2GKRI 3VDPA 1OVOA 3UOEA 3OXLA 3TOAA 1BMOA 2OD1A 5DAEA 1LR9A 1DS3I 1ULKA 2GKVA 1V1IA 2ODDA 3SGQI 5FUVA 3UGDA 1TUSA 5CCLA 1HDLA 1HJAI 2GVIA 1MT1A 4SGBI 3TOBA 1M8BA 2PQ8A 2KMOA 1TBRR 2NU3I 2QPOA 1MJ9A 2YQPA 4DNCA 2F3CI 5FUXA 3OL0A 4MPIA 2LEOA 2K9HA 3R5CA 1IY5A 2UZ3A 1TIHA 2ENNA 2YUUA 3SEKC 2JW6A 2JYYA 2QQ0A 2XRCA 3FC3A 1IY6A 1MJBA 2JA1A 1CT2I 1CGJI 1CHOI 2ENZA 2LB7A 1K7TA 1W3SA 1FAQA 1TBOA 5E3PA 1CT0I 1AN1I 1UUCA 3OXFA 1UVGA 2JXDA 1SGNI 2QQDA 4GI3C 1Y8FA 2X3TA 2Y0MA 1NXUA 1Y1CA 5HQ8A 1PJUA 2ORWA 2ROWA 1Z2IA 4OVOA 3R5BA 2RC4A 1KBFA 2ORVA 4UXHA 2WCYA 1TURA 2WVJA 2CWGA 1CGII 5FUWA 3UFFA 1WGTA 2LUYA 2KCXA 2SGDI 3RU0A 9WGAA 2CWFA 1PPFI 2NU0I 2X52A 3D00A 3MEKA 1X4SA 2CWHA 2P6AC 5EX3A 1ULMA 2L7XA 3R5AA 2ARPF 1FY7A 3FSYA 3KY9A 1XA6A 1M8CA 3UEYA 1MJAA 1CT4I 2NU4I 1YU6C 4WP4A 2DKVA 1R79A 1UVFA 4JCVE 2N71A 5J8FA 1BUSA 1IW4A 1KMAA 1HEVA 2M5XA 1K7UA 2OZUA 1S20A 3E2IA 2KMRA 1OMUA 2OU2A 4UXJA 5E3RA 1X74A 1P9ZA 1OYVI 3OXGA 1W4RA 1TOTA 2J87A 1YTPA 1TGSI 4UXIA 1SGYI 4HGUA 1WGCA 2V53A 3UEJA 4AMLA 5E3QA 4E1PA 5JHWC 3QAHA 2GIVA 1N13A 2NU2I 2KMQA 2N17A 1TBNA 2OVOA 4FKDA 1VDDA 1WTJA 1PCEA 4B6DA 3E59A 2QQEA 2VRWB 5HI7A 3QWPA 4E1RA 3B4VC 2RIJA 1XX6A 2J9RA 3GOXA 3R5DA 2SGEI 2V1CC 2QQCA 3BJIA 3TO7A 2UVOA 3HH2C 1HPTA 2ELIA 2B8TA 1LR8A 1Y1BA 3VE5A 3UGLA 1V1HA 1WKXA 5J8CA 2DB6A 5EX0A 4A24A 7WGAA 3SGBI 1U5KA 1SGEI 1LR7A 2WGCA 4L9MA 1R0RI 3OVOA 1PTRA 2BUSA 2ERWA 1P9GA 2KMPA 2L8EA 1DS2I 2SGPI 1K7VA 1TBQR 1SGPI 2W0TA 2SGFI
chains in the Genus database with same CATH topology
3TJQA 3UGIA 2FNFX 1XBTA 2GKTI 1SGRI 2N1AB 2A20A 2DIPA 3PDNA 1PTQA 2NU1I 5CCMA 1FARA 2JZMA 2V1CA 3CXLA 1SGDI 1RFHA 2B0UC 5FUYA 3VDUA 1NUBA 1CE3A 2E73A 2SGQI 2E5RA 3QTLD 1H0ZA 2N52A 1FYBA 1Z7KB 2CJSC 1CSOI 1KBEA 1SGQI 1OMTA 2GKRI 3VDPA 1OVOA 3OXLA 1BMOA 2OD1A 5DAEA 1LR9A 1DS3I 2GKVA 1V1IA 2ODDA 3SGQI 5FUVA 3UGDA 1TUSA 5CCLA 1HDLA 1HJAI 2GVIA 1MT1A 4SGBI 1M8BA 2KMOA 1TBRR 2NU3I 2QPOA 2YQPA 2F3CI 5FUXA 3OL0A 1IY5A 2LEOA 2K9HA 2UZ3A 1TIHA 2ENNA 2YUUA 3SEKC 2JW6A 2JYYA 2QQ0A 2XRCA 3FC3A 1IY6A 2JA1A 1CT2I 1CGJI 1CHOI 2ENZA 1W3SA 1FAQA 1TBOA 1CT0I 1AN1I 1UUCA 3OXFA 1UVGA 2JXDA 1SGNI 2QQDA 4GI3C 1Y8FA 1Y1CA 5HQ8A 1PJUA 2ORWA 2ROWA 4OVOA 1KBFA 2ORVA 4UXHA 2WCYA 1TURA 2WVJA 1CGII 5FUWA 3UFFA 2LUYA 2KCXA 2SGDI 3RU0A 1PPFI 2NU0I 3D00A 3MEKA 5EX3A 1X4SA 2P6AC 2L7XA 2ARPF 3KY9A 1XA6A 1M8CA 3UEYA 1CT4I 2NU4I 1YU6C 1R79A 1UVFA 4JCVE 2N71A 1BUSA 1IW4A 1KMAA 2M5XA 3E2IA 2KMRA 1OMUA 4UXJA 1X74A 1OYVI 3OXGA 1W4RA 1TOTA 2J87A 1YTPA 1TGSI 4UXIA 1SGYI 4HGUA 3UEJA 2V53A 4E1PA 5JHWC 1N13A 2NU2I 2KMQA 2N17A 1TBNA 2OVOA 4FKDA 1VDDA 1PCEA 4B6DA 3E59A 2QQEA 2VRWB 5HI7A 3QWPA 4E1RA 3B4VC 1XX6A 2J9RA 3GOXA 2SGEI 2V1CC 2QQCA 3BJIA 3HH2C 1HPTA 2ELIA 2B8TA 1LR8A 1Y1BA 3VE5A 3UGLA 1V1HA 2DB6A 5EX0A 4A24A 3SGBI 1U5KA 1SGEI 1LR7A 4L9MA 1R0RI 3OVOA 1PTRA 2BUSA 2ERWA 2KMPA 2SGPI 2L8EA 1DS2I 1TBQR 1SGPI 2W0TA 2SGFI
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TJQ A;  2GKT I;  1SGR I;  2NU1 I;  2JZM A;  1SGD I;  2B0U C;  1NUB A;  1CE3 A;  2SGQ I;  1H0Z A;  3QTL D;  2N52 A;  1FYB A;  1Z7K B;  1CSO I;  1SGQ I;  1OMT A;  2GKR I;  1OVO A;  1BMO A;  5DAE A;  1LR9 A;  1DS3 I;  2GKV A;  3SGQ I;  1HDL A;  1TUS A;  1HJA I;  1MT1 A;  4SGB I;  1M8B A;  2KMO A;  1TBR R;  2NU3 I;  2F3C I;  1IY5 A;  2LEO A;  3SEK C;  1TIH A;  2JYY A;  2XRC A;  1IY6 A;  1CT2 I;  1CGJ I;  1CHO I;  1CT0 I;  1AN1 I;  1UUC A;  1UVG A;  2JXD A;  1SGN I;  2QQD A;  4GI3 C;  1Y1C A;  1PJU A;  4OVO A;  2WCY A;  1TUR A;  1CGI I;  2KCX A;  2SGD I;  2NU0 I;  1PPF I;  2P6A C;  2ARP F;  1M8C A;  1CT4 I;  2NU4 I;  1YU6 C;  1IW4 A;  1UVF A;  1BUS A;  2N71 A;  1KMA A;  2M5X A;  2KMR A;  1OMU A;  1OYV I;  1YTP A;  1TGS I;  1SGY I;  4HGU A;  2V53 A;  5JHW C;  2NU2 I;  1N13 A;  2KMQ A;  2N17 A;  2OVO A;  1PCE A;  3B4V C;  2SGE I;  2QQC A;  3HH2 C;  1HPT A;  1LR8 A;  1Y1B A;  3SGB I;  1SGE I;  1LR7 A;  1R0R I;  3OVO A;  2BUS A;  2ERW A;  2KMP A;  2SGP I;  1DS2 I;  1TBQ R;  1SGP I;  2SGF I; 
#chains in the Genus database with same CATH topology
 3TJQ A;  3UGI A;  3TO6 A;  2FNF X;  1ULN A;  1XBT A;  1SGR I;  2GKT I;  2A20 A;  2DIP A;  2N1A B;  3PDN A;  1PTQ A;  2NU1 I;  5CCM A;  1FAR A;  2JZM A;  3TO9 A;  2V1C A;  3CXL A;  1SGD I;  1RFH A;  2B0U C;  5FUY A;  3VDU A;  1NUB A;  1CE3 A;  2E73 A;  1UHA A;  2SGQ I;  1Q9B A;  2E5R A;  3QTL D;  1H0Z A;  2N52 A;  1FYB A;  1Z7K B;  3FSX A;  2CJS C;  1CSO I;  1KBE A;  1SGQ I;  1OMT A;  2GKR I;  3VDP A;  1OVO A;  3UOE A;  3OXL A;  3TOA A;  1BMO A;  2OD1 A;  5DAE A;  1LR9 A;  1DS3 I;  1ULK A;  2GKV A;  1V1I A;  2ODD A;  3SGQ I;  5FUV A;  3UGD A;  1TUS A;  5CCL A;  1HDL A;  1HJA I;  2GVI A;  1MT1 A;  4SGB I;  3TOB A;  1M8B A;  2PQ8 A;  2KMO A;  1TBR R;  2NU3 I;  2QPO A;  1MJ9 A;  2YQP A;  4DNC A;  2F3C I;  5FUX A;  3OL0 A;  4MPI A;  2LEO A;  2K9H A;  3R5C A;  1IY5 A;  2UZ3 A;  1TIH A;  2ENN A;  2YUU A;  3SEK C;  2JW6 A;  2JYY A;  2QQ0 A;  2XRC A;  3FC3 A;  1IY6 A;  1MJB A;  2JA1 A;  1CT2 I;  1CGJ I;  1CHO I;  2ENZ A;  2LB7 A;  1K7T A;  1W3S A;  1FAQ A;  1TBO A;  5E3P A;  1CT0 I;  1AN1 I;  1UUC A;  3OXF A;  1UVG A;  2JXD A;  1SGN I;  2QQD A;  4GI3 C;  1Y8F A;  2X3T A;  2Y0M A;  1NXU A;  1Y1C A;  5HQ8 A;  1PJU A;  2ORW A;  2ROW A;  1Z2I A;  4OVO A;  3R5B A;  2RC4 A;  1KBF A;  2ORV A;  4UXH A;  2WCY A;  1TUR A;  2WVJ A;  2CWG A;  1CGI I;  5FUW A;  3UFF A;  1WGT A;  2LUY A;  2KCX A;  2SGD I;  3RU0 A;  9WGA A;  2CWF A;  1PPF I;  2NU0 I;  2X52 A;  3D00 A;  3MEK A;  1X4S A;  2CWH A;  2P6A C;  5EX3 A;  1ULM A;  2L7X A;  3R5A A;  2ARP F;  1FY7 A;  3FSY A;  3KY9 A;  1XA6 A;  1M8C A;  3UEY A;  1MJA A;  1CT4 I;  2NU4 I;  1YU6 C;  4WP4 A;  2DKV A;  1R79 A;  1UVF A;  4JCV E;  2N71 A;  5J8F A;  1BUS A;  1IW4 A;  1KMA A;  1HEV A;  2M5X A;  1K7U A;  2OZU A;  1S20 A;  3E2I A;  2KMR A;  1OMU A;  2OU2 A;  4UXJ A;  5E3R A;  1X74 A;  1P9Z A;  1OYV I;  3OXG A;  1W4R A;  1TOT A;  2J87 A;  1YTP A;  1TGS I;  4UXI A;  1SGY I;  4HGU A;  1WGC A;  2V53 A;  3UEJ A;  4AML A;  5E3Q A;  4E1P A;  5JHW C;  3QAH A;  2GIV A;  1N13 A;  2NU2 I;  2KMQ A;  2N17 A;  1TBN A;  2OVO A;  4FKD A;  1VDD A;  1WTJ A;  1PCE A;  4B6D A;  3E59 A;  2QQE A;  2VRW B;  5HI7 A;  3QWP A;  4E1R A;  3B4V C;  2RIJ A;  1XX6 A;  2J9R A;  3GOX A;  3R5D A;  2SGE I;  2V1C C;  2QQC A;  3BJI A;  3TO7 A;  2UVO A;  3HH2 C;  1HPT A;  2ELI A;  2B8T A;  1LR8 A;  1Y1B A;  3VE5 A;  3UGL A;  1V1H A;  1WKX A;  5J8C A;  2DB6 A;  5EX0 A;  4A24 A;  7WGA A;  3SGB I;  1U5K A;  1SGE I;  1LR7 A;  2WGC A;  4L9M A;  1R0R I;  3OVO A;  1PTR A;  2BUS A;  2ERW A;  1P9G A;  2KMP A;  2L8E A;  1DS2 I;  2SGP I;  1K7V A;  1TBQ R;  1SGP I;  2W0T A;  2SGF I; 
#chains in the Genus database with same CATH homology
 3TJQ A;  3UGI A;  2FNF X;  1XBT A;  2GKT I;  1SGR I;  2N1A B;  2A20 A;  2DIP A;  3PDN A;  1PTQ A;  2NU1 I;  5CCM A;  1FAR A;  2JZM A;  2V1C A;  3CXL A;  1SGD I;  1RFH A;  2B0U C;  5FUY A;  3VDU A;  1NUB A;  1CE3 A;  2E73 A;  2SGQ I;  2E5R A;  3QTL D;  1H0Z A;  2N52 A;  1FYB A;  1Z7K B;  2CJS C;  1CSO I;  1KBE A;  1SGQ I;  1OMT A;  2GKR I;  3VDP A;  1OVO A;  3OXL A;  1BMO A;  2OD1 A;  5DAE A;  1LR9 A;  1DS3 I;  2GKV A;  1V1I A;  2ODD A;  3SGQ I;  5FUV A;  3UGD A;  1TUS A;  5CCL A;  1HDL A;  1HJA I;  2GVI A;  1MT1 A;  4SGB I;  1M8B A;  2KMO A;  1TBR R;  2NU3 I;  2QPO A;  2YQP A;  2F3C I;  5FUX A;  3OL0 A;  1IY5 A;  2LEO A;  2K9H A;  2UZ3 A;  1TIH A;  2ENN A;  2YUU A;  3SEK C;  2JW6 A;  2JYY A;  2QQ0 A;  2XRC A;  3FC3 A;  1IY6 A;  2JA1 A;  1CT2 I;  1CGJ I;  1CHO I;  2ENZ A;  1W3S A;  1FAQ A;  1TBO A;  1CT0 I;  1AN1 I;  1UUC A;  3OXF A;  1UVG A;  2JXD A;  1SGN I;  2QQD A;  4GI3 C;  1Y8F A;  1Y1C A;  5HQ8 A;  1PJU A;  2ORW A;  2ROW A;  4OVO A;  1KBF A;  2ORV A;  4UXH A;  2WCY A;  1TUR A;  2WVJ A;  1CGI I;  5FUW A;  3UFF A;  2LUY A;  2KCX A;  2SGD I;  3RU0 A;  1PPF I;  2NU0 I;  3D00 A;  3MEK A;  5EX3 A;  1X4S A;  2P6A C;  2L7X A;  2ARP F;  3KY9 A;  1XA6 A;  1M8C A;  3UEY A;  1CT4 I;  2NU4 I;  1YU6 C;  1R79 A;  1UVF A;  4JCV E;  2N71 A;  1BUS A;  1IW4 A;  1KMA A;  2M5X A;  3E2I A;  2KMR A;  1OMU A;  4UXJ A;  1X74 A;  1OYV I;  3OXG A;  1W4R A;  1TOT A;  2J87 A;  1YTP A;  1TGS I;  4UXI A;  1SGY I;  4HGU A;  3UEJ A;  2V53 A;  4E1P A;  5JHW C;  1N13 A;  2NU2 I;  2KMQ A;  2N17 A;  1TBN A;  2OVO A;  4FKD A;  1VDD A;  1PCE A;  4B6D A;  3E59 A;  2QQE A;  2VRW B;  5HI7 A;  3QWP A;  4E1R A;  3B4V C;  1XX6 A;  2J9R A;  3GOX A;  2SGE I;  2V1C C;  2QQC A;  3BJI A;  3HH2 C;  1HPT A;  2ELI A;  2B8T A;  1LR8 A;  1Y1B A;  3VE5 A;  3UGL A;  1V1H A;  2DB6 A;  5EX0 A;  4A24 A;  3SGB I;  1U5K A;  1SGE I;  1LR7 A;  4L9M A;  1R0R I;  3OVO A;  1PTR A;  2BUS A;  2ERW A;  2KMP A;  2SGP I;  2L8E A;  1DS2 I;  1TBQ R;  1SGP I;  2W0T A;  2SGF I; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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