4E1PA

Crystal structure of the dimerization domain of lsr2 from mycobacterium tuberculosis in the p 1 21 1 space group
Total Genus 12
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
55
structure length
55
Chain Sequence
KVTVTLVDDFDGSGAADETVEFGLDGVTYEIDLSTKNATKLRGDLKQWVAAGRRV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Dna binding protein
source organism Mycobacterium tuberculosis
publication title The structure of the oligomerization domain of Lsr2 from Mycobacterium tuberculosis reveals a mechanism for chromosome organization and protection.
pubmed doi rcsb
molecule keywords Protein lsr2
total genus 12
structure length 55
sequence length 55
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-03-06
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.230 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 4e1pA00
4E1RA 4E1PA
chains in the Genus database with same CATH superfamily
1WGTA 1PTQA 2FNFX 1V1HA 2GKTI 1MJ9A 3SGQI 1MT1A 1CHOI 1UUCA 2LB7A 2N71A 2WCYA 1Z2IA 1YU6C 3BJIA 5HI7A 1WKXA 1LR7A 1X74A 2L8EA 1XA6A 1TIHA 1XBTA 2V53A 2LEOA 3OXFA 1PJUA 9WGAA 1H0ZA 1Z7KB 4UXIA 2NU1I 2NU4I 1PCEA 2PQ8A 2CWGA 1W3SA 1LR9A 2W0TA 3GOXA 2RIJA 3TOAA 3UEJA 1HDLA 2SGFI 4E1RA 1TBQR 3E59A 3SGBI 1NUBA 2ORVA 2X52A 2JXDA 1NXUA 5CCMA 3UFFA 2GKVA 4HGUA 2KCXA 2Y0MA 5FUWA 1BUSA 2JYYA 4SGBI 1CGJI 1Y8FA 1FY7A 2SGQI 2KMRA 1OMUA 2UZ3A 4AMLA 5E3PA 4MPIA 1HJAI 1M8BA 1K7UA 2B8TA 1P9ZA 1VDDA 2ORWA 2QPOA 2J9RA 2V1CC 3HH2C 3TJQA 4UXJA 1SGYI 1TBNA 4UXHA 5CCLA 1N13A 3R5AA 3OXLA 1R0RI 1IY5A 1KMAA 5J8FA 2N52A 2NU3I 3R5BA 2J87A 3R5DA 1ULNA 5FUVA 1PTRA 2E5RA 2NU0I 1S20A 1CSOI 1IW4A 3OXGA 2DIPA 1CT0I 2ENZA 2YUUA 4B6DA 4GI3C 7WGAA 3SEKC 2CWHA 2OD1A 1TGSI 2ODDA 5HQ8A 1IY6A 1TOTA 2E73A 1CT2I 2K9HA 2V1CA 5J8CA 4L9MA 2XRCA 1KBEA 2OZUA 2KMPA 5JHWC 1Y1CA 2JW6A 1WTJA 5E3QA 1DS3I 2QQCA 2OVOA 1RFHA 3VDUA 1BMOA 1MJAA 2DKVA 2SGPI 3KY9A 3QWPA 3E2IA 5FUYA 1K7TA 1OVOA 4E1PA 3TO9A 2DB6A 2L7XA 2CJSC 5FUXA 1XX6A 2N1AB 2ELIA 1DS2I 2SGEI 3CXLA 4WP4A 1X4SA 3VE5A 4A24A 3D00A 1SGEI 2UVOA 1TURA 2LUYA 1HPTA 1SGQI 2OU2A 2VRWB 3OVOA 3PDNA 5EX0A 1W4RA 2SGDI 1HEVA 2JA1A 3TO6A 1SGPI 1ULMA 3VDPA 5E3RA 1WGCA 1PPFI 1LR8A 2KMOA 3FSYA 2X3TA 3FC3A 1TBOA 2QQDA 1TUSA 2QQEA 2ERWA 1AN1I 1OMTA 1OYVI 1Q9BA 4OVOA 3TO7A 2KMQA 1FARA 1ULKA 2P6AC 2A20A 1M8CA 1KBFA 1TBRR 3QTLD 1UVGA 2JZMA 3OL0A 3UEYA 2ARPF 2QQ0A 3TOBA 1CT4I 1P9GA 2GKRI 2WVJA 3UGDA 1SGNI 1SGDI 3B4VC 1YTPA 2N17A 1MJBA 4DNCA 3FSXA 2BUSA 1UHAA 1K7VA 2NU2I 4FKDA 1FYBA 2ENNA 1R79A 2YQPA 5DAEA 2GIVA 1CE3A 1U5KA 1FAQA 2B0UC 2WGCA 1CGII 2RC4A 3UGLA 3UGIA 3MEKA 2ROWA 2F3CI 2CWFA 1V1IA 4JCVE 3UOEA 1SGRI 2M5XA 3RU0A 1UVFA 1Y1BA 5EX3A 3R5CA 2GVIA 3QAHA
chains in the Genus database with same CATH topology
1PTQA 2FNFX 1V1HA 2GKTI 3SGQI 1MT1A 1CHOI 1UUCA 2N71A 2WCYA 5HI7A 1YU6C 3BJIA 1X74A 1LR7A 2L8EA 1XA6A 1TIHA 1XBTA 2V53A 2LEOA 3OXFA 1PJUA 1H0ZA 1Z7KB 4UXIA 2NU1I 2NU4I 1PCEA 1W3SA 1LR9A 2W0TA 3GOXA 1HDLA 3UEJA 2SGFI 4E1RA 1TBQR 3E59A 3SGBI 1NUBA 2ORVA 5CCMA 2JXDA 3UFFA 2GKVA 4HGUA 2KCXA 5FUWA 1BUSA 2JYYA 4SGBI 1CGJI 1Y8FA 2SGQI 2KMRA 1OMUA 2UZ3A 1HJAI 1M8BA 2B8TA 1VDDA 2ORWA 2QPOA 2J9RA 2V1CC 3HH2C 3TJQA 4UXJA 1SGYI 1TBNA 4UXHA 5CCLA 1N13A 1KMAA 3OXLA 1R0RI 1IY5A 2N52A 2NU3I 2J87A 5FUVA 1PTRA 2E5RA 2NU0I 1IW4A 1CSOI 3OXGA 2DIPA 1CT0I 2ENZA 2YUUA 4B6DA 4GI3C 3SEKC 2OD1A 1TGSI 2ODDA 5HQ8A 1IY6A 1TOTA 2E73A 1CT2I 2K9HA 2V1CA 4L9MA 2XRCA 1KBEA 2KMPA 5JHWC 1Y1CA 2JW6A 1DS3I 2QQCA 2OVOA 1RFHA 3VDUA 1BMOA 2SGPI 3KY9A 3QWPA 3E2IA 5FUYA 1OVOA 4E1PA 2DB6A 2L7XA 2CJSC 5FUXA 1XX6A 2N1AB 2ELIA 1DS2I 2SGEI 3CXLA 4A24A 1X4SA 3VE5A 3D00A 1SGEI 1TURA 2LUYA 1HPTA 1SGQI 3OVOA 2VRWB 3PDNA 5EX0A 1W4RA 2SGDI 2JA1A 1SGPI 3VDPA 1PPFI 1LR8A 2KMOA 3FC3A 1TBOA 2QQDA 1TUSA 2QQEA 2ERWA 1AN1I 1OMTA 1OYVI 4OVOA 2KMQA 1FARA 2P6AC 2A20A 1M8CA 1KBFA 1TBRR 3QTLD 1UVGA 2JZMA 3OL0A 3UEYA 2ARPF 2QQ0A 1CT4I 2GKRI 2WVJA 3UGDA 1SGNI 1SGDI 3B4VC 1YTPA 2N17A 2BUSA 2NU2I 4FKDA 1FYBA 2ENNA 1R79A 2YQPA 5DAEA 1CE3A 1U5KA 1FAQA 2B0UC 1CGII 3UGLA 3UGIA 3MEKA 2ROWA 2F3CI 1V1IA 4JCVE 1SGRI 2M5XA 3RU0A 1UVFA 1Y1BA 5EX3A 2GVIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4E1R A;  4E1P A; 
#chains in the Genus database with same CATH topology
 1WGT A;  1PTQ A;  2FNF X;  1V1H A;  2GKT I;  1MJ9 A;  3SGQ I;  1MT1 A;  1CHO I;  1UUC A;  2LB7 A;  2N71 A;  2WCY A;  1Z2I A;  1YU6 C;  3BJI A;  5HI7 A;  1WKX A;  1LR7 A;  1X74 A;  2L8E A;  1XA6 A;  1TIH A;  1XBT A;  2V53 A;  2LEO A;  3OXF A;  1PJU A;  9WGA A;  1H0Z A;  1Z7K B;  4UXI A;  2NU1 I;  2NU4 I;  1PCE A;  2PQ8 A;  2CWG A;  1W3S A;  1LR9 A;  2W0T A;  3GOX A;  2RIJ A;  3TOA A;  3UEJ A;  1HDL A;  2SGF I;  4E1R A;  1TBQ R;  3E59 A;  3SGB I;  1NUB A;  2ORV A;  2X52 A;  2JXD A;  1NXU A;  5CCM A;  3UFF A;  2GKV A;  4HGU A;  2KCX A;  2Y0M A;  5FUW A;  1BUS A;  2JYY A;  4SGB I;  1CGJ I;  1Y8F A;  1FY7 A;  2SGQ I;  2KMR A;  1OMU A;  2UZ3 A;  4AML A;  5E3P A;  4MPI A;  1HJA I;  1M8B A;  1K7U A;  2B8T A;  1P9Z A;  1VDD A;  2ORW A;  2QPO A;  2J9R A;  2V1C C;  3HH2 C;  3TJQ A;  4UXJ A;  1SGY I;  1TBN A;  4UXH A;  5CCL A;  1N13 A;  3R5A A;  3OXL A;  1R0R I;  1IY5 A;  1KMA A;  5J8F A;  2N52 A;  2NU3 I;  3R5B A;  2J87 A;  3R5D A;  1ULN A;  5FUV A;  1PTR A;  2E5R A;  2NU0 I;  1S20 A;  1CSO I;  1IW4 A;  3OXG A;  2DIP A;  1CT0 I;  2ENZ A;  2YUU A;  4B6D A;  4GI3 C;  7WGA A;  3SEK C;  2CWH A;  2OD1 A;  1TGS I;  2ODD A;  5HQ8 A;  1IY6 A;  1TOT A;  2E73 A;  1CT2 I;  2K9H A;  2V1C A;  5J8C A;  4L9M A;  2XRC A;  1KBE A;  2OZU A;  2KMP A;  5JHW C;  1Y1C A;  2JW6 A;  1WTJ A;  5E3Q A;  1DS3 I;  2QQC A;  2OVO A;  1RFH A;  3VDU A;  1BMO A;  1MJA A;  2DKV A;  2SGP I;  3KY9 A;  3QWP A;  3E2I A;  5FUY A;  1K7T A;  1OVO A;  4E1P A;  3TO9 A;  2DB6 A;  2L7X A;  2CJS C;  5FUX A;  1XX6 A;  2N1A B;  2ELI A;  1DS2 I;  2SGE I;  3CXL A;  4WP4 A;  1X4S A;  3VE5 A;  4A24 A;  3D00 A;  1SGE I;  2UVO A;  1TUR A;  2LUY A;  1HPT A;  1SGQ I;  2OU2 A;  2VRW B;  3OVO A;  3PDN A;  5EX0 A;  1W4R A;  2SGD I;  1HEV A;  2JA1 A;  3TO6 A;  1SGP I;  1ULM A;  3VDP A;  5E3R A;  1WGC A;  1PPF I;  1LR8 A;  2KMO A;  3FSY A;  2X3T A;  3FC3 A;  1TBO A;  2QQD A;  1TUS A;  2QQE A;  2ERW A;  1AN1 I;  1OMT A;  1OYV I;  1Q9B A;  4OVO A;  3TO7 A;  2KMQ A;  1FAR A;  1ULK A;  2P6A C;  2A20 A;  1M8C A;  1KBF A;  1TBR R;  3QTL D;  1UVG A;  2JZM A;  3OL0 A;  3UEY A;  2ARP F;  2QQ0 A;  3TOB A;  1CT4 I;  1P9G A;  2GKR I;  2WVJ A;  3UGD A;  1SGN I;  1SGD I;  3B4V C;  1YTP A;  2N17 A;  1MJB A;  4DNC A;  3FSX A;  2BUS A;  1UHA A;  1K7V A;  2NU2 I;  4FKD A;  1FYB A;  2ENN A;  1R79 A;  2YQP A;  5DAE A;  2GIV A;  1CE3 A;  1U5K A;  1FAQ A;  2B0U C;  2WGC A;  1CGI I;  2RC4 A;  3UGL A;  3UGI A;  3MEK A;  2ROW A;  2F3C I;  2CWF A;  1V1I A;  4JCV E;  3UOE A;  1SGR I;  2M5X A;  3RU0 A;  1UVF A;  1Y1B A;  5EX3 A;  3R5C A;  2GVI A;  3QAH A; 
#chains in the Genus database with same CATH homology
 1PTQ A;  2FNF X;  1V1H A;  2GKT I;  3SGQ I;  1MT1 A;  1CHO I;  1UUC A;  2N71 A;  2WCY A;  5HI7 A;  1YU6 C;  3BJI A;  1X74 A;  1LR7 A;  2L8E A;  1XA6 A;  1TIH A;  1XBT A;  2V53 A;  2LEO A;  3OXF A;  1PJU A;  1H0Z A;  1Z7K B;  4UXI A;  2NU1 I;  2NU4 I;  1PCE A;  1W3S A;  1LR9 A;  2W0T A;  3GOX A;  1HDL A;  3UEJ A;  2SGF I;  4E1R A;  1TBQ R;  3E59 A;  3SGB I;  1NUB A;  2ORV A;  5CCM A;  2JXD A;  3UFF A;  2GKV A;  4HGU A;  2KCX A;  5FUW A;  1BUS A;  2JYY A;  4SGB I;  1CGJ I;  1Y8F A;  2SGQ I;  2KMR A;  1OMU A;  2UZ3 A;  1HJA I;  1M8B A;  2B8T A;  1VDD A;  2ORW A;  2QPO A;  2J9R A;  2V1C C;  3HH2 C;  3TJQ A;  4UXJ A;  1SGY I;  1TBN A;  4UXH A;  5CCL A;  1N13 A;  1KMA A;  3OXL A;  1R0R I;  1IY5 A;  2N52 A;  2NU3 I;  2J87 A;  5FUV A;  1PTR A;  2E5R A;  2NU0 I;  1IW4 A;  1CSO I;  3OXG A;  2DIP A;  1CT0 I;  2ENZ A;  2YUU A;  4B6D A;  4GI3 C;  3SEK C;  2OD1 A;  1TGS I;  2ODD A;  5HQ8 A;  1IY6 A;  1TOT A;  2E73 A;  1CT2 I;  2K9H A;  2V1C A;  4L9M A;  2XRC A;  1KBE A;  2KMP A;  5JHW C;  1Y1C A;  2JW6 A;  1DS3 I;  2QQC A;  2OVO A;  1RFH A;  3VDU A;  1BMO A;  2SGP I;  3KY9 A;  3QWP A;  3E2I A;  5FUY A;  1OVO A;  4E1P A;  2DB6 A;  2L7X A;  2CJS C;  5FUX A;  1XX6 A;  2N1A B;  2ELI A;  1DS2 I;  2SGE I;  3CXL A;  4A24 A;  1X4S A;  3VE5 A;  3D00 A;  1SGE I;  1TUR A;  2LUY A;  1HPT A;  1SGQ I;  3OVO A;  2VRW B;  3PDN A;  5EX0 A;  1W4R A;  2SGD I;  2JA1 A;  1SGP I;  3VDP A;  1PPF I;  1LR8 A;  2KMO A;  3FC3 A;  1TBO A;  2QQD A;  1TUS A;  2QQE A;  2ERW A;  1AN1 I;  1OMT A;  1OYV I;  4OVO A;  2KMQ A;  1FAR A;  2P6A C;  2A20 A;  1M8C A;  1KBF A;  1TBR R;  3QTL D;  1UVG A;  2JZM A;  3OL0 A;  3UEY A;  2ARP F;  2QQ0 A;  1CT4 I;  2GKR I;  2WVJ A;  3UGD A;  1SGN I;  1SGD I;  3B4V C;  1YTP A;  2N17 A;  2BUS A;  2NU2 I;  4FKD A;  1FYB A;  2ENN A;  1R79 A;  2YQP A;  5DAE A;  1CE3 A;  1U5K A;  1FAQ A;  2B0U C;  1CGI I;  3UGL A;  3UGI A;  3MEK A;  2ROW A;  2F3C I;  1V1I A;  4JCV E;  1SGR I;  2M5X A;  3RU0 A;  1UVF A;  1Y1B A;  5EX3 A;  2GVI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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