4E1PA

Crystal structure of the dimerization domain of lsr2 from mycobacterium tuberculosis in the p 1 21 1 space group
Total Genus 12
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
55
structure length
55
Chain Sequence
KVTVTLVDDFDGSGAADETVEFGLDGVTYEIDLSTKNATKLRGDLKQWVAAGRRV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Dna binding protein
molecule keywords Protein lsr2
publication title The structure of the oligomerization domain of Lsr2 from Mycobacterium tuberculosis reveals a mechanism for chromosome organization and protection.
pubmed doi rcsb
source organism Mycobacterium tuberculosis
total genus 12
structure length 55
sequence length 55
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-03-06
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.230 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 4e1pA00
4E1RA 4E1PA
chains in the Genus database with same CATH superfamily
1ULNA 1SGQI 1TBQR 4FKDA 1OYVI 2J9RA 2XRCA 3TO6A 1LR8A 3OL0A 1SGEI 1SGYI 2GKTI 2J87A 1FARA 1TBRR 5CCMA 3OVOA 2KMRA 2BUSA 2NU2I 1HJAI 1Q9BA 2W0TA 1WGTA 3VDPA 4E1PA 2P6AC 1UUCA 4OVOA 2VRWB 2B0UC 5E3PA 1WKXA 2K9HA 2KMQA 1IY5A 2CJSC 4B6DA 3UGDA 7WGAA 5EX0A 5FUWA 5HI7A 1MJBA 1CE3A 3GOXA 1NXUA 1V1IA 2Y0MA 2JXDA 2CWGA 2OZUA 2OVOA 2V1CA 3QTLD 3TOAA 1HPTA 1LR9A 1CGJI 1TBNA 2JYYA 2QQEA 2ROWA 3TO9A 2DIPA 1P9GA 2KMOA 1IW4A 1FAQA 2JW6A 1R79A 1UVGA 1XBTA 2JA1A 3R5BA 1TURA 1YTPA 1N13A 1UHAA 2GIVA 1HEVA 2L8EA 1X4SA 2E73A 5J8CA 1CGII 3QWPA 2N1AB 5FUYA 1DS3I 2DKVA 4A24A 1H0ZA 1XA6A 2QQ0A 1AN1I 2X52A 1ULMA 1HDLA 1P9ZA 3KY9A 3TJQA 2OU2A 5EX3A 3UEYA 5E3QA 2ELIA 4WP4A 2RC4A 4UXHA 2FNFX 4E1RA 5DAEA 2ENZA 3QAHA 2V53A 2F3CI 3B4VC 3SGQI 3OXGA 2GVIA 1TUSA 2UVOA 1PJUA 1MT1A 2ODDA 3R5AA 1WGCA 2N52A 2ARPF 2NU3I 1CSOI 2V1CC 1TIHA 3TO7A 3UOEA 1IY6A 2QQDA 3E59A 1SGNI 1SGPI 2SGEI 1X74A 2PQ8A 2WCYA 1UVFA 1SGDI 2B8TA 4MPIA 1KMAA 2OD1A 1WTJA 1Z2IA 3CXLA 1U5KA 2N17A 1PTRA 1K7VA 2ENNA 3R5DA 2KCXA 2CWHA 2NU1I 2WVJA 1M8BA 1CT0I 1V1HA 3UGLA 3UEJA 3PDNA 1XX6A 2KMPA 2WGCA 2GKRI 5FUXA 1FYBA 2LEOA 1KBFA 4JCVE 5J8FA 1PPFI 2QPOA 1PTQA 1OMTA 1TBOA 1CT2I 2X3TA 5FUVA 2SGDI 4L9MA 3VDUA 1K7TA 1PCEA 1W4RA 1R0RI 1SGRI 3R5CA 1KBEA 3SGBI 2M5XA 1NUBA 2DB6A 3MEKA 1YU6C 5HQ8A 3FC3A 1Y1BA 2LB7A 2ORWA 3OXFA 3UGIA 1K7UA 4AMLA 3RU0A 1S20A 2GKVA 2YUUA 2E5RA 4SGBI 1BMOA 2NU4I 4DNCA 1BUSA 1OVOA 2N71A 2SGFI 3OXLA 5CCLA 1VDDA 3D00A 4UXJA 2LUYA 1W3SA 2SGPI 1ULKA 3UFFA 1TGSI 1TOTA 2ORVA 5E3RA 2ERWA 1Y8FA 2JZMA 2QQCA 1Z7KB 1M8CA 4GI3C 1OMUA 2L7XA 2YQPA 1RFHA 1FY7A 2SGQI 2RIJA 2CWFA 1Y1CA 3SEKC 3TOBA 4UXIA 3HH2C 4HGUA 1DS2I 2NU0I 1LR7A 9WGAA 2A20A 2UZ3A 3FSYA 3VE5A 1MJAA 1MJ9A 1CHOI 3BJIA 1CT4I 5JHWC 3E2IA 3FSXA
chains in the Genus database with same CATH topology
1SGQI 1TBQR 4FKDA 1OYVI 2J9RA 2XRCA 1LR8A 3OL0A 1SGEI 1SGYI 2GKTI 2J87A 1FARA 1TBRR 5CCMA 3OVOA 2KMRA 2BUSA 2NU2I 1HJAI 2W0TA 3VDPA 4E1PA 2P6AC 1UUCA 4OVOA 2VRWB 2B0UC 2K9HA 2KMQA 1IY5A 2CJSC 4B6DA 3UGDA 5EX0A 5FUWA 5HI7A 1CE3A 3GOXA 1V1IA 2JXDA 1IW4A 2V1CA 2OVOA 3QTLD 1HPTA 1LR9A 1CGJI 1TBNA 2JYYA 2QQEA 2ROWA 2DIPA 2KMOA 1FAQA 2JW6A 1R79A 1UVGA 1XBTA 2JA1A 1TURA 1YTPA 1N13A 2L8EA 1X4SA 2E73A 1CGII 3QWPA 2N1AB 5FUYA 1DS3I 4A24A 1H0ZA 1XA6A 2QQ0A 1AN1I 1HDLA 3KY9A 3TJQA 5EX3A 3UEYA 2ELIA 4UXHA 2FNFX 4E1RA 5DAEA 2ENZA 2V53A 2F3CI 3B4VC 3SGQI 3OXGA 2GVIA 1TUSA 1PJUA 1MT1A 2ODDA 2N52A 2ARPF 2NU3I 1CSOI 2V1CC 1TIHA 1IY6A 2QQDA 3E59A 1SGNI 1SGPI 2SGEI 1X74A 2WCYA 1UVFA 1SGDI 2B8TA 1KMAA 2OD1A 3CXLA 1U5KA 2N17A 1PTRA 2ENNA 2KCXA 2NU1I 2WVJA 1M8BA 1CT0I 1V1HA 3UGLA 3UEJA 3PDNA 1XX6A 2KMPA 5FUXA 2GKRI 2LEOA 1KBFA 4JCVE 1PPFI 2QPOA 1PTQA 1OMTA 1TBOA 1CT2I 5FUVA 2SGDI 4L9MA 3VDUA 1PCEA 1W4RA 1R0RI 1SGRI 3SGBI 1KBEA 2M5XA 1NUBA 2DB6A 3MEKA 1YU6C 5HQ8A 3FC3A 1Y1BA 2ORWA 3OXFA 3UGIA 3RU0A 2GKVA 2YUUA 2E5RA 4SGBI 1BMOA 2NU4I 1BUSA 1OVOA 2N71A 2SGFI 3OXLA 5CCLA 1VDDA 3D00A 4UXJA 2LUYA 1W3SA 2SGPI 3UFFA 1TGSI 1TOTA 2ORVA 2ERWA 1Y8FA 2JZMA 2QQCA 1Z7KB 1M8CA 4GI3C 1OMUA 2L7XA 2YQPA 1RFHA 2SGQI 1Y1CA 3SEKC 4UXIA 3HH2C 4HGUA 1DS2I 2NU0I 1LR7A 2A20A 2UZ3A 3VE5A 1CHOI 3BJIA 1CT4I 5JHWC 3E2IA 1FYBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4E1R A;  4E1P A; 
#chains in the Genus database with same CATH topology
 1ULN A;  1SGQ I;  1TBQ R;  4FKD A;  1OYV I;  2J9R A;  2XRC A;  3TO6 A;  1LR8 A;  3OL0 A;  1SGE I;  1SGY I;  2GKT I;  2J87 A;  1FAR A;  1TBR R;  5CCM A;  3OVO A;  2KMR A;  2BUS A;  2NU2 I;  1HJA I;  1Q9B A;  2W0T A;  1WGT A;  3VDP A;  4E1P A;  2P6A C;  1UUC A;  4OVO A;  2VRW B;  2B0U C;  5E3P A;  1WKX A;  2K9H A;  2KMQ A;  1IY5 A;  2CJS C;  4B6D A;  3UGD A;  7WGA A;  5EX0 A;  5FUW A;  5HI7 A;  1MJB A;  1CE3 A;  3GOX A;  1NXU A;  1V1I A;  2Y0M A;  2JXD A;  2CWG A;  2OZU A;  2OVO A;  2V1C A;  3QTL D;  3TOA A;  1HPT A;  1LR9 A;  1CGJ I;  1TBN A;  2JYY A;  2QQE A;  2ROW A;  3TO9 A;  2DIP A;  1P9G A;  2KMO A;  1IW4 A;  1FAQ A;  2JW6 A;  1R79 A;  1UVG A;  1XBT A;  2JA1 A;  3R5B A;  1TUR A;  1YTP A;  1N13 A;  1UHA A;  2GIV A;  1HEV A;  2L8E A;  1X4S A;  2E73 A;  5J8C A;  1CGI I;  3QWP A;  2N1A B;  5FUY A;  1DS3 I;  2DKV A;  4A24 A;  1H0Z A;  1XA6 A;  2QQ0 A;  1AN1 I;  2X52 A;  1ULM A;  1HDL A;  1P9Z A;  3KY9 A;  3TJQ A;  2OU2 A;  5EX3 A;  3UEY A;  5E3Q A;  2ELI A;  4WP4 A;  2RC4 A;  4UXH A;  2FNF X;  4E1R A;  5DAE A;  2ENZ A;  3QAH A;  2V53 A;  2F3C I;  3B4V C;  3SGQ I;  3OXG A;  2GVI A;  1TUS A;  2UVO A;  1PJU A;  1MT1 A;  2ODD A;  3R5A A;  1WGC A;  2N52 A;  2ARP F;  2NU3 I;  1CSO I;  2V1C C;  1TIH A;  3TO7 A;  3UOE A;  1IY6 A;  2QQD A;  3E59 A;  1SGN I;  1SGP I;  2SGE I;  1X74 A;  2PQ8 A;  2WCY A;  1UVF A;  1SGD I;  2B8T A;  4MPI A;  1KMA A;  2OD1 A;  1WTJ A;  1Z2I A;  3CXL A;  1U5K A;  2N17 A;  1PTR A;  1K7V A;  2ENN A;  3R5D A;  2KCX A;  2CWH A;  2NU1 I;  2WVJ A;  1M8B A;  1CT0 I;  1V1H A;  3UGL A;  3UEJ A;  3PDN A;  1XX6 A;  2KMP A;  2WGC A;  2GKR I;  5FUX A;  1FYB A;  2LEO A;  1KBF A;  4JCV E;  5J8F A;  1PPF I;  2QPO A;  1PTQ A;  1OMT A;  1TBO A;  1CT2 I;  2X3T A;  5FUV A;  2SGD I;  4L9M A;  3VDU A;  1K7T A;  1PCE A;  1W4R A;  1R0R I;  1SGR I;  3R5C A;  1KBE A;  3SGB I;  2M5X A;  1NUB A;  2DB6 A;  3MEK A;  1YU6 C;  5HQ8 A;  3FC3 A;  1Y1B A;  2LB7 A;  2ORW A;  3OXF A;  3UGI A;  1K7U A;  4AML A;  3RU0 A;  1S20 A;  2GKV A;  2YUU A;  2E5R A;  4SGB I;  1BMO A;  2NU4 I;  4DNC A;  1BUS A;  1OVO A;  2N71 A;  2SGF I;  3OXL A;  5CCL A;  1VDD A;  3D00 A;  4UXJ A;  2LUY A;  1W3S A;  2SGP I;  1ULK A;  3UFF A;  1TGS I;  1TOT A;  2ORV A;  5E3R A;  2ERW A;  1Y8F A;  2JZM A;  2QQC A;  1Z7K B;  1M8C A;  4GI3 C;  1OMU A;  2L7X A;  2YQP A;  1RFH A;  1FY7 A;  2SGQ I;  2RIJ A;  2CWF A;  1Y1C A;  3SEK C;  3TOB A;  4UXI A;  3HH2 C;  4HGU A;  1DS2 I;  2NU0 I;  1LR7 A;  9WGA A;  2A20 A;  2UZ3 A;  3FSY A;  3VE5 A;  1MJA A;  1MJ9 A;  1CHO I;  3BJI A;  1CT4 I;  5JHW C;  3E2I A;  3FSX A; 
#chains in the Genus database with same CATH homology
 1SGQ I;  1TBQ R;  4FKD A;  1OYV I;  2J9R A;  2XRC A;  1LR8 A;  3OL0 A;  1SGE I;  1SGY I;  2GKT I;  2J87 A;  1FAR A;  1TBR R;  5CCM A;  3OVO A;  2KMR A;  2BUS A;  2NU2 I;  1HJA I;  2W0T A;  3VDP A;  4E1P A;  2P6A C;  1UUC A;  4OVO A;  2VRW B;  2B0U C;  2K9H A;  2KMQ A;  1IY5 A;  2CJS C;  4B6D A;  3UGD A;  5EX0 A;  5FUW A;  5HI7 A;  1CE3 A;  3GOX A;  1V1I A;  2JXD A;  1IW4 A;  2V1C A;  2OVO A;  3QTL D;  1HPT A;  1LR9 A;  1CGJ I;  1TBN A;  2JYY A;  2QQE A;  2ROW A;  2DIP A;  2KMO A;  1FAQ A;  2JW6 A;  1R79 A;  1UVG A;  1XBT A;  2JA1 A;  1TUR A;  1YTP A;  1N13 A;  2L8E A;  1X4S A;  2E73 A;  1CGI I;  3QWP A;  2N1A B;  5FUY A;  1DS3 I;  4A24 A;  1H0Z A;  1XA6 A;  2QQ0 A;  1AN1 I;  1HDL A;  3KY9 A;  3TJQ A;  5EX3 A;  3UEY A;  2ELI A;  4UXH A;  2FNF X;  4E1R A;  5DAE A;  2ENZ A;  2V53 A;  2F3C I;  3B4V C;  3SGQ I;  3OXG A;  2GVI A;  1TUS A;  1PJU A;  1MT1 A;  2ODD A;  2N52 A;  2ARP F;  2NU3 I;  1CSO I;  2V1C C;  1TIH A;  1IY6 A;  2QQD A;  3E59 A;  1SGN I;  1SGP I;  2SGE I;  1X74 A;  2WCY A;  1UVF A;  1SGD I;  2B8T A;  1KMA A;  2OD1 A;  3CXL A;  1U5K A;  2N17 A;  1PTR A;  2ENN A;  2KCX A;  2NU1 I;  2WVJ A;  1M8B A;  1CT0 I;  1V1H A;  3UGL A;  3UEJ A;  3PDN A;  1XX6 A;  2KMP A;  5FUX A;  2GKR I;  2LEO A;  1KBF A;  4JCV E;  1PPF I;  2QPO A;  1PTQ A;  1OMT A;  1TBO A;  1CT2 I;  5FUV A;  2SGD I;  4L9M A;  3VDU A;  1PCE A;  1W4R A;  1R0R I;  1SGR I;  3SGB I;  1KBE A;  2M5X A;  1NUB A;  2DB6 A;  3MEK A;  1YU6 C;  5HQ8 A;  3FC3 A;  1Y1B A;  2ORW A;  3OXF A;  3UGI A;  3RU0 A;  2GKV A;  2YUU A;  2E5R A;  4SGB I;  1BMO A;  2NU4 I;  1BUS A;  1OVO A;  2N71 A;  2SGF I;  3OXL A;  5CCL A;  1VDD A;  3D00 A;  4UXJ A;  2LUY A;  1W3S A;  2SGP I;  3UFF A;  1TGS I;  1TOT A;  2ORV A;  2ERW A;  1Y8F A;  2JZM A;  2QQC A;  1Z7K B;  1M8C A;  4GI3 C;  1OMU A;  2L7X A;  2YQP A;  1RFH A;  2SGQ I;  1Y1C A;  3SEK C;  4UXI A;  3HH2 C;  4HGU A;  1DS2 I;  2NU0 I;  1LR7 A;  2A20 A;  2UZ3 A;  3VE5 A;  1CHO I;  3BJI A;  1CT4 I;  5JHW C;  3E2I A;  1FYB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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