4E1PA

Crystal structure of the dimerization domain of lsr2 from mycobacterium tuberculosis in the p 1 21 1 space group
Total Genus 12
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
55
structure length
55
Chain Sequence
KVTVTLVDDFDGSGAADETVEFGLDGVTYEIDLSTKNATKLRGDLKQWVAAGRRV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Protein lsr2
publication title The structure of the oligomerization domain of Lsr2 from Mycobacterium tuberculosis reveals a mechanism for chromosome organization and protection.
pubmed doi rcsb
source organism Mycobacterium tuberculosis
molecule tags Dna binding protein
total genus 12
structure length 55
sequence length 55
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-03-06
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.230 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 4e1pA00
4E1RA 4E1PA
chains in the Genus database with same CATH superfamily
1FY7A 2M5XA 1R79A 2ELIA 2QQ0A 1TBQR 1LR9A 1OMUA 2E5RA 3KY9A 1K7TA 1DS3I 1K7UA 3UOEA 1PPFI 1MJAA 1VDDA 1Q9BA 3UGIA 4FKDA 1MJ9A 3BJIA 2SGEI 1TBOA 1CHOI 2N1AB 1TUSA 1PJUA 1CGJI 4SGBI 1TURA 3FSYA 5JHWC 4AMLA 3FC3A 2ROWA 2LUYA 3TOBA 4UXJA 2QQCA 1AN1I 2E73A 5J8FA 3UFFA 1TOTA 2QPOA 2KMPA 1UVFA 2GKTI 1WKXA 2QQDA 3R5DA 1SGQI 1XA6A 1CT0I 1X4SA 3VE5A 1P9GA 1SGPI 2GKVA 2L8EA 1HPTA 2CWHA 2SGDI 2ORWA 3OVOA 2V1CA 5EX0A 1CSOI 2ODDA 1MJBA 2K9HA 2KCXA 3OXFA 1M8BA 3UGLA 1FYBA 3SGBI 5FUVA 2B0UC 2LEOA 3OXGA 3CXLA 4OVOA 1S20A 2UVOA 2J9RA 5DAEA 3QTLD 3QWPA 4E1RA 2BUSA 1TGSI 2N17A 5HI7A 1SGRI 2J87A 1Z7KB 1IY6A 5E3PA 2L7XA 2YUUA 1SGYI 2DB6A 1KBEA 2B8TA 2Y0MA 2YQPA 1W4RA 1Y8FA 1OYVI 1R0RI 1K7VA 1SGEI 1NXUA 1UVGA 1Y1CA 2V1CC 1IW4A 2WGCA 2KMRA 1V1HA 1KMAA 3TOAA 3E59A 3UEYA 2NU1I 1LR8A 1Y1BA 1UHAA 1TBRR 3PDNA 1N13A 2FNFX 2CJSC 5CCLA 1SGDI 1X74A 2KMQA 2WCYA 1CT2I 4WP4A 1V1IA 4L9MA 2OU2A 3VDPA 2GVIA 2GIVA 3SEKC 3UGDA 2GKRI 1SGNI 5E3RA 3TJQA 3D00A 2NU4I 4B6DA 2SGFI 2CWGA 3QAHA 4DNCA 1PTQA 1ULNA 1WGCA 2ARPF 2NU0I 1CT4I 2RC4A 1Z2IA 1DS2I 3GOXA 3E2IA 1UUCA 2KMOA 2N52A 7WGAA 5FUYA 1IY5A 1PCEA 1U5KA 2PQ8A 2P6AC 2SGPI 1FARA 2JW6A 1P9ZA 1W3SA 1YU6C 2X3TA 5E3QA 3R5CA 2A20A 2QQEA 4UXHA 1OMTA 1HDLA 2OVOA 1XX6A 2WVJA 1BUSA 2RIJA 2V53A 2SGQI 5HQ8A 1XBTA 1LR7A 3HH2C 3MEKA 4A24A 2NU2I 1NUBA 3UEJA 1KBFA 2CWFA 2W0TA 3TO6A 1ULMA 4GI3C 3R5AA 4E1PA 5FUWA 5CCMA 1H0ZA 2OZUA 3OL0A 1CE3A 2ERWA 2ENNA 2ENZA 5EX3A 5J8CA 2DKVA 1M8CA 3TO9A 1TBNA 2F3CI 2JYYA 2VRWB 1HJAI 2XRCA 2ORVA 3B4VC 1RFHA 4MPIA 1HEVA 1WGTA 2UZ3A 1TIHA 2LB7A 3VDUA 5FUXA 3R5BA 2NU3I 1OVOA 3FSXA 2JA1A 2JXDA 2OD1A 9WGAA 3RU0A 3SGQI 1CGII 1WTJA 1PTRA 1BMOA 4HGUA 1FAQA 1YTPA 4JCVE 4UXIA 2N71A 2DIPA 3OXLA 3TO7A 1MT1A 2JZMA 2X52A 1ULKA
chains in the Genus database with same CATH topology
2M5XA 1R79A 2ELIA 2QQ0A 1TBQR 1LR9A 1OMUA 2E5RA 3KY9A 1DS3I 1PPFI 1VDDA 3UGIA 4FKDA 3BJIA 2SGEI 1TBOA 1CHOI 2N1AB 1TUSA 1PJUA 1CGJI 4SGBI 1TURA 5JHWC 3FC3A 2ROWA 2LUYA 4UXJA 2QQCA 1AN1I 2E73A 3UFFA 1TOTA 2QPOA 2KMPA 1UVFA 2GKTI 2QQDA 1SGQI 1XA6A 1CT0I 1X4SA 3VE5A 1SGPI 2GKVA 2L8EA 1HPTA 2SGDI 3OVOA 2ORWA 2V1CA 5EX0A 1CSOI 2ODDA 3OXFA 2K9HA 2KCXA 1FYBA 1M8BA 3UGLA 3SGBI 5FUVA 2B0UC 2LEOA 3OXGA 3CXLA 2J9RA 5DAEA 3QTLD 3QWPA 4E1RA 2BUSA 1TGSI 2N17A 5HI7A 1SGRI 2J87A 1Z7KB 1IY6A 2L7XA 2YUUA 1SGYI 2DB6A 1KBEA 2B8TA 2YQPA 1W4RA 1Y8FA 1OYVI 1R0RI 1SGEI 1UVGA 1Y1CA 2V1CC 1IW4A 1KMAA 2KMRA 1V1HA 3E59A 3UEYA 2NU1I 1LR8A 1Y1BA 1TBRR 3PDNA 1N13A 2FNFX 2CJSC 5CCLA 1SGDI 1X74A 2KMQA 2WCYA 1CT2I 1V1IA 4L9MA 3VDPA 2GVIA 3SEKC 3UGDA 2GKRI 1SGNI 3TJQA 3D00A 2NU4I 4B6DA 2SGFI 1PTQA 2ARPF 2NU0I 1CT4I 1DS2I 3GOXA 3E2IA 1UUCA 2KMOA 2N52A 1IY5A 5FUYA 1PCEA 1U5KA 2P6AC 2SGPI 1FARA 2JW6A 1W3SA 1YU6C 2A20A 2QQEA 4UXHA 1OMTA 1HDLA 2OVOA 1XX6A 2WVJA 1BUSA 2V53A 2SGQI 5HQ8A 1XBTA 1LR7A 3HH2C 3MEKA 4A24A 2NU2I 1NUBA 3UEJA 1KBFA 2W0TA 4GI3C 4E1PA 5FUWA 5CCMA 1H0ZA 3OL0A 1CE3A 2ERWA 2ENNA 2ENZA 5EX3A 1M8CA 1TBNA 2F3CI 2JYYA 2VRWB 1HJAI 2XRCA 2ORVA 3B4VC 1RFHA 2UZ3A 1TIHA 3VDUA 5FUXA 2NU3I 1OVOA 2JA1A 2JXDA 2OD1A 3RU0A 3SGQI 1CGII 1PTRA 1BMOA 4HGUA 1FAQA 1YTPA 4JCVE 4UXIA 2N71A 2DIPA 3OXLA 1MT1A 2JZMA 4OVOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4E1R A;  4E1P A; 
#chains in the Genus database with same CATH topology
 1FY7 A;  2M5X A;  1R79 A;  2ELI A;  2QQ0 A;  1TBQ R;  1LR9 A;  1OMU A;  2E5R A;  3KY9 A;  1K7T A;  1DS3 I;  1K7U A;  3UOE A;  1PPF I;  1MJA A;  1VDD A;  1Q9B A;  3UGI A;  4FKD A;  1MJ9 A;  3BJI A;  2SGE I;  1TBO A;  1CHO I;  2N1A B;  1TUS A;  1PJU A;  1CGJ I;  4SGB I;  1TUR A;  3FSY A;  5JHW C;  4AML A;  3FC3 A;  2ROW A;  2LUY A;  3TOB A;  4UXJ A;  2QQC A;  1AN1 I;  2E73 A;  5J8F A;  3UFF A;  1TOT A;  2QPO A;  2KMP A;  1UVF A;  2GKT I;  1WKX A;  2QQD A;  3R5D A;  1SGQ I;  1XA6 A;  1CT0 I;  1X4S A;  3VE5 A;  1P9G A;  1SGP I;  2GKV A;  2L8E A;  1HPT A;  2CWH A;  2SGD I;  2ORW A;  3OVO A;  2V1C A;  5EX0 A;  1CSO I;  2ODD A;  1MJB A;  2K9H A;  2KCX A;  3OXF A;  1M8B A;  3UGL A;  1FYB A;  3SGB I;  5FUV A;  2B0U C;  2LEO A;  3OXG A;  3CXL A;  4OVO A;  1S20 A;  2UVO A;  2J9R A;  5DAE A;  3QTL D;  3QWP A;  4E1R A;  2BUS A;  1TGS I;  2N17 A;  5HI7 A;  1SGR I;  2J87 A;  1Z7K B;  1IY6 A;  5E3P A;  2L7X A;  2YUU A;  1SGY I;  2DB6 A;  1KBE A;  2B8T A;  2Y0M A;  2YQP A;  1W4R A;  1Y8F A;  1OYV I;  1R0R I;  1K7V A;  1SGE I;  1NXU A;  1UVG A;  1Y1C A;  2V1C C;  1IW4 A;  2WGC A;  2KMR A;  1V1H A;  1KMA A;  3TOA A;  3E59 A;  3UEY A;  2NU1 I;  1LR8 A;  1Y1B A;  1UHA A;  1TBR R;  3PDN A;  1N13 A;  2FNF X;  2CJS C;  5CCL A;  1SGD I;  1X74 A;  2KMQ A;  2WCY A;  1CT2 I;  4WP4 A;  1V1I A;  4L9M A;  2OU2 A;  3VDP A;  2GVI A;  2GIV A;  3SEK C;  3UGD A;  2GKR I;  1SGN I;  5E3R A;  3TJQ A;  3D00 A;  2NU4 I;  4B6D A;  2SGF I;  2CWG A;  3QAH A;  4DNC A;  1PTQ A;  1ULN A;  1WGC A;  2ARP F;  2NU0 I;  1CT4 I;  2RC4 A;  1Z2I A;  1DS2 I;  3GOX A;  3E2I A;  1UUC A;  2KMO A;  2N52 A;  7WGA A;  5FUY A;  1IY5 A;  1PCE A;  1U5K A;  2PQ8 A;  2P6A C;  2SGP I;  1FAR A;  2JW6 A;  1P9Z A;  1W3S A;  1YU6 C;  2X3T A;  5E3Q A;  3R5C A;  2A20 A;  2QQE A;  4UXH A;  1OMT A;  1HDL A;  2OVO A;  1XX6 A;  2WVJ A;  1BUS A;  2RIJ A;  2V53 A;  2SGQ I;  5HQ8 A;  1XBT A;  1LR7 A;  3HH2 C;  3MEK A;  4A24 A;  2NU2 I;  1NUB A;  3UEJ A;  1KBF A;  2CWF A;  2W0T A;  3TO6 A;  1ULM A;  4GI3 C;  3R5A A;  4E1P A;  5FUW A;  5CCM A;  1H0Z A;  2OZU A;  3OL0 A;  1CE3 A;  2ERW A;  2ENN A;  2ENZ A;  5EX3 A;  5J8C A;  2DKV A;  1M8C A;  3TO9 A;  1TBN A;  2F3C I;  2JYY A;  2VRW B;  1HJA I;  2XRC A;  2ORV A;  3B4V C;  1RFH A;  4MPI A;  1HEV A;  1WGT A;  2UZ3 A;  1TIH A;  2LB7 A;  3VDU A;  5FUX A;  3R5B A;  2NU3 I;  1OVO A;  3FSX A;  2JA1 A;  2JXD A;  2OD1 A;  9WGA A;  3RU0 A;  3SGQ I;  1CGI I;  1WTJ A;  1PTR A;  1BMO A;  4HGU A;  1FAQ A;  1YTP A;  4JCV E;  4UXI A;  2N71 A;  2DIP A;  3OXL A;  3TO7 A;  1MT1 A;  2JZM A;  2X52 A;  1ULK A; 
#chains in the Genus database with same CATH homology
 2M5X A;  1R79 A;  2ELI A;  2QQ0 A;  1TBQ R;  1LR9 A;  1OMU A;  2E5R A;  3KY9 A;  1DS3 I;  1PPF I;  1VDD A;  3UGI A;  4FKD A;  3BJI A;  2SGE I;  1TBO A;  1CHO I;  2N1A B;  1TUS A;  1PJU A;  1CGJ I;  4SGB I;  1TUR A;  5JHW C;  3FC3 A;  2ROW A;  2LUY A;  4UXJ A;  2QQC A;  1AN1 I;  2E73 A;  3UFF A;  1TOT A;  2QPO A;  2KMP A;  1UVF A;  2GKT I;  2QQD A;  1SGQ I;  1XA6 A;  1CT0 I;  1X4S A;  3VE5 A;  1SGP I;  2GKV A;  2L8E A;  1HPT A;  2SGD I;  3OVO A;  2ORW A;  2V1C A;  5EX0 A;  1CSO I;  2ODD A;  3OXF A;  2K9H A;  2KCX A;  1FYB A;  1M8B A;  3UGL A;  3SGB I;  5FUV A;  2B0U C;  2LEO A;  3OXG A;  3CXL A;  2J9R A;  5DAE A;  3QTL D;  3QWP A;  4E1R A;  2BUS A;  1TGS I;  2N17 A;  5HI7 A;  1SGR I;  2J87 A;  1Z7K B;  1IY6 A;  2L7X A;  2YUU A;  1SGY I;  2DB6 A;  1KBE A;  2B8T A;  2YQP A;  1W4R A;  1Y8F A;  1OYV I;  1R0R I;  1SGE I;  1UVG A;  1Y1C A;  2V1C C;  1IW4 A;  1KMA A;  2KMR A;  1V1H A;  3E59 A;  3UEY A;  2NU1 I;  1LR8 A;  1Y1B A;  1TBR R;  3PDN A;  1N13 A;  2FNF X;  2CJS C;  5CCL A;  1SGD I;  1X74 A;  2KMQ A;  2WCY A;  1CT2 I;  1V1I A;  4L9M A;  3VDP A;  2GVI A;  3SEK C;  3UGD A;  2GKR I;  1SGN I;  3TJQ A;  3D00 A;  2NU4 I;  4B6D A;  2SGF I;  1PTQ A;  2ARP F;  2NU0 I;  1CT4 I;  1DS2 I;  3GOX A;  3E2I A;  1UUC A;  2KMO A;  2N52 A;  1IY5 A;  5FUY A;  1PCE A;  1U5K A;  2P6A C;  2SGP I;  1FAR A;  2JW6 A;  1W3S A;  1YU6 C;  2A20 A;  2QQE A;  4UXH A;  1OMT A;  1HDL A;  2OVO A;  1XX6 A;  2WVJ A;  1BUS A;  2V53 A;  2SGQ I;  5HQ8 A;  1XBT A;  1LR7 A;  3HH2 C;  3MEK A;  4A24 A;  2NU2 I;  1NUB A;  3UEJ A;  1KBF A;  2W0T A;  4GI3 C;  4E1P A;  5FUW A;  5CCM A;  1H0Z A;  3OL0 A;  1CE3 A;  2ERW A;  2ENN A;  2ENZ A;  5EX3 A;  1M8C A;  1TBN A;  2F3C I;  2JYY A;  2VRW B;  1HJA I;  2XRC A;  2ORV A;  3B4V C;  1RFH A;  2UZ3 A;  1TIH A;  3VDU A;  5FUX A;  2NU3 I;  1OVO A;  2JA1 A;  2JXD A;  2OD1 A;  3RU0 A;  3SGQ I;  1CGI I;  1PTR A;  1BMO A;  4HGU A;  1FAQ A;  1YTP A;  4JCV E;  4UXI A;  2N71 A;  2DIP A;  3OXL A;  1MT1 A;  2JZM A;  4OVO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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