1DS2I

Crystal structure of sgpb:omtky3-coo-leu18i
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
51
structure length
50
Chain Sequence
VDCSEYPKPACTEYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords PROTEINASE B (SGPB)
publication title Contribution of peptide bonds to inhibitor-protease binding: crystal structures of the turkey ovomucoid third domain backbone variants OMTKY3-Pro18I and OMTKY3-psi[COO]-Leu18I in complex with Streptomyces griseus proteinase B (SGPB) and the structure of the free inhibitor, OMTKY-3-psi[CH2NH2+]-Asp19I
pubmed doi rcsb
source organism Meleagris gallopavo
molecule tags Hydrolase/hydrolase inhibitor
total genus 13
structure length 50
sequence length 51
ec nomenclature
pdb deposition date 2000-01-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
I PF00050 Kazal_1 Kazal-type serine protease inhibitor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.30 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 1ds2I00
1PPFI 3TJQA 1MT1A 1TIHA 4OVOA 2SGDI 2NU1I 1M8BA 3QTLD 2GKTI 3HH2C 1SGEI 2NU0I 1FYBA 2GKVA 2KMPA 2SGPI 1SGQI 5DAEA 3SGBI 2NU3I 1CSOI 1OMUA 4GI3C 1UVFA 2JZMA 2N71A 1OMTA 2KMRA 2SGFI 1YTPA 1PCEA 2BUSA 1CGII 2QQDA 1LR7A 1KMAA 3OVOA 2WCYA 1Z7KB 2XRCA 1CE3A 1Y1CA 1SGDI 1R0RI 1UUCA 1CT4I 5JHWC 3SEKC 1YU6C 2F3CI 1TURA 2GKRI 4SGBI 1CT0I 1CGJI 2N52A 2P6AC 1SGYI 2KMQA 1CHOI 1TGSI 2QQCA 1IY6A 3SGQI 2SGQI 1SGNI 2B0UC 2NU4I 2KCXA 2KMOA 1TBRR 2V53A 1SGRI 1TUSA 1DS2I 2ERWA 2JYYA 2LEOA 4HGUA 1OVOA 1LR8A 1HPTA 2JXDA 2M5XA 1H0ZA 1N13A 1M8CA 1BUSA 1LR9A 1IW4A 2SGEI 3B4VC 1PJUA 2NU2I 1NUBA 1DS3I 2OVOA 2ARPF 1TBQR 1AN1I 2N17A 1HJAI 1OYVI 1HDLA 1SGPI 1Y1BA 1BMOA 1CT2I 1UVGA 1IY5A
chains in the Genus database with same CATH superfamily
1PPFI 2YUUA 2E73A 3TJQA 1MT1A 1XX6A 4B6DA 2J9RA 3KY9A 1TIHA 2DIPA 1MJAA 2ORWA 4OVOA 1Z2IA 3MEKA 2SGDI 2NU1I 1K7VA 3E2IA 2V1CA 1M8BA 2ENZA 1K7UA 1PTRA 1WGCA 3QTLD 3TOBA 1UHAA 2GKTI 1HEVA 3HH2C 3VDUA 5EX3A 4E1PA 1SGEI 5E3PA 2NU0I 5E3RA 1FYBA 2GKVA 5JHWC 2KMPA 2OU2A 5FUWA 2SGPI 2CJSC 1RFHA 1SGQI 3OXFA 3R5BA 1X4SA 4FKDA 5DAEA 3UOEA 3SGBI 3TO6A 2B8TA 3QAHA 2L7XA 2ROWA 7WGAA 2NU3I 1MJ9A 1CSOI 1OMUA 1W4RA 1WKXA 4GI3C 1R79A 1TBNA 1UVFA 1K7TA 2JZMA 2N71A 1OMTA 1TOTA 2KMRA 2SGFI 2V1CC 1YTPA 1PCEA 2BUSA 3R5DA 1CGII 1MJBA 1PTQA 2QQDA 1P9GA 3E59A 2RIJA 4DNCA 2GIVA 1WTJA 1LR7A 5CCLA 2QPOA 1IY5A 3D00A 5FUXA 1KMAA 2A20A 3OVOA 2WCYA 1Z7KB 2XRCA 1CE3A 4L9MA 2WGCA 3QWPA 1Y1CA 3PDNA 1ULKA 3UFFA 1FY7A 1SGDI 4AMLA 3TOAA 3OXGA 1R0RI 1VDDA 3FSYA 3FC3A 2FNFX 1WGTA 1UUCA 1CT4I 1V1HA 1Q9BA 1ULNA 1ULMA 1XBTA 2QQ0A 2VRWB 1YU6C 3R5CA 4UXHA 5FUVA 2F3CI 1TURA 3SEKC 3BJIA 2JW6A 2GKRI 4SGBI 1CT0I 1CGJI 2LB7A 2N52A 2ODDA 5EX0A 2P6AC 4JCVE 1SGYI 2KMQA 1CHOI 1TGSI 2QQCA 5J8CA 1KBFA 1IY6A 1S20A 2SGQI 3FSXA 3RU0A 3SGQI 5J8FA 1SGNI 2UZ3A 1FARA 3UEJA 2B0UC 2J87A 4WP4A 2NU4I 3UGIA 2UVOA 2CWHA 2KCXA 1V1IA 1TBRR 1XA6A 2KMOA 2V53A 9WGAA 1SGRI 1TUSA 2CWFA 2QQEA 1DS2I 5FUYA 3CXLA 2ERWA 3VE5A 4E1RA 2L8EA 2JYYA 3OXLA 2LEOA 4HGUA 2LUYA 1OVOA 1LR8A 2K9HA 1HPTA 2JXDA 2PQ8A 3UGDA 2CWGA 2M5XA 5E3QA 2W0TA 2ENNA 4UXIA 1H0ZA 2X52A 1NXUA 1N13A 2JA1A 5CCMA 1M8CA 1BUSA 2YQPA 1LR9A 2ELIA 4MPIA 3TO9A 2SGEI 2X3TA 1U5KA 1IW4A 2GVIA 1P9ZA 4UXJA 3GOXA 3B4VC 3UEYA 3TO7A 3OL0A 2OD1A 2E5RA 5HQ8A 1FAQA 1PJUA 1Y8FA 2NU2I 2N1AB 1NUBA 3VDPA 1DS3I 2OVOA 2ARPF 1W3SA 1TBQR 2DKVA 1AN1I 2N17A 1HJAI 1KBEA 2DB6A 1OYVI 3UGLA 4A24A 1HDLA 1SGPI 2RC4A 1X74A 1TBOA 1Y1BA 1BMOA 2ORVA 1CT2I 1UVGA 2OZUA 2WVJA 3R5AA 5HI7A 2Y0MA
chains in the Genus database with same CATH topology
1PPFI 2YUUA 2E73A 3TJQA 1MT1A 1XX6A 4B6DA 2J9RA 3KY9A 1TIHA 2DIPA 4OVOA 2ORWA 3MEKA 2SGDI 2NU1I 3E2IA 2V1CA 1M8BA 2ENZA 1PTRA 3QTLD 2GKTI 3HH2C 3VDUA 5EX3A 4E1PA 1SGEI 2NU0I 1FYBA 2GKVA 2KMPA 5FUWA 2SGPI 2CJSC 1RFHA 1SGQI 3OXFA 1X4SA 4FKDA 5DAEA 3SGBI 2B8TA 2L7XA 2ROWA 2NU3I 1CSOI 1OMUA 1W4RA 4GI3C 1R79A 1TBNA 1UVFA 2JZMA 2N71A 1OMTA 1TOTA 2KMRA 2SGFI 2V1CC 1YTPA 1PCEA 2BUSA 1CGII 1PTQA 2QQDA 3E59A 5CCLA 1IY5A 1LR7A 2QPOA 3D00A 5FUXA 1KMAA 2A20A 3OVOA 2WCYA 1Z7KB 2XRCA 1CE3A 4L9MA 3QWPA 1Y1CA 3PDNA 3UFFA 1SGDI 3OXGA 1R0RI 1VDDA 3FC3A 2FNFX 2QQ0A 1UUCA 1CT4I 1XBTA 1V1HA 2VRWB 4UXHA 3UGLA 3SEKC 5JHWC 1YU6C 5FUVA 2F3CI 1TURA 3BJIA 2JW6A 2GKRI 4SGBI 1CT0I 1CGJI 2N52A 2ODDA 5EX0A 2P6AC 4JCVE 1SGYI 2KMQA 1CHOI 1TGSI 2QQCA 1KBFA 1IY6A 3SGQI 2SGQI 3RU0A 1SGNI 2UZ3A 1FARA 3UEJA 2B0UC 2J87A 2NU4I 3UGIA 2KCXA 1V1IA 1TBRR 1XA6A 2KMOA 2V53A 1SGRI 1TUSA 2QQEA 1DS2I 5FUYA 3CXLA 2ERWA 3VE5A 4E1RA 2L8EA 2JYYA 3OXLA 2LEOA 4HGUA 2LUYA 1OVOA 1LR8A 2K9HA 1HPTA 2JXDA 3UGDA 2M5XA 2W0TA 2ENNA 4UXIA 1H0ZA 2JA1A 1N13A 5CCMA 1M8CA 1BUSA 2YQPA 1LR9A 2ELIA 1IW4A 2SGEI 1U5KA 2GVIA 4UXJA 3GOXA 3B4VC 3UEYA 3OL0A 2OD1A 2E5RA 5HQ8A 1FAQA 1PJUA 1Y8FA 2NU2I 2N1AB 1NUBA 3VDPA 1DS3I 2OVOA 2ARPF 1W3SA 1TBQR 1AN1I 2N17A 1HJAI 1KBEA 2DB6A 1OYVI 4A24A 1HDLA 1SGPI 1X74A 1TBOA 1Y1BA 1BMOA 2ORVA 1CT2I 1UVGA 2WVJA 5HI7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1PPF I;  3TJQ A;  1MT1 A;  1TIH A;  4OVO A;  2SGD I;  2NU1 I;  1M8B A;  3QTL D;  2GKT I;  3HH2 C;  1SGE I;  2NU0 I;  1FYB A;  2GKV A;  2KMP A;  2SGP I;  1SGQ I;  5DAE A;  3SGB I;  2NU3 I;  1CSO I;  1OMU A;  4GI3 C;  1UVF A;  2JZM A;  2N71 A;  1OMT A;  2KMR A;  2SGF I;  1YTP A;  1PCE A;  2BUS A;  1CGI I;  2QQD A;  1LR7 A;  1KMA A;  3OVO A;  2WCY A;  1Z7K B;  2XRC A;  1CE3 A;  1Y1C A;  1SGD I;  1R0R I;  1UUC A;  1CT4 I;  5JHW C;  3SEK C;  1YU6 C;  2F3C I;  1TUR A;  2GKR I;  4SGB I;  1CT0 I;  1CGJ I;  2N52 A;  2P6A C;  1SGY I;  2KMQ A;  1CHO I;  1TGS I;  2QQC A;  1IY6 A;  3SGQ I;  2SGQ I;  1SGN I;  2B0U C;  2NU4 I;  2KCX A;  2KMO A;  1TBR R;  2V53 A;  1SGR I;  1TUS A;  1DS2 I;  2ERW A;  2JYY A;  2LEO A;  4HGU A;  1OVO A;  1LR8 A;  1HPT A;  2JXD A;  2M5X A;  1H0Z A;  1N13 A;  1M8C A;  1BUS A;  1LR9 A;  1IW4 A;  2SGE I;  3B4V C;  1PJU A;  2NU2 I;  1NUB A;  1DS3 I;  2OVO A;  2ARP F;  1TBQ R;  1AN1 I;  2N17 A;  1HJA I;  1OYV I;  1HDL A;  1SGP I;  1Y1B A;  1BMO A;  1CT2 I;  1UVG A;  1IY5 A; 
#chains in the Genus database with same CATH topology
 1PPF I;  2YUU A;  2E73 A;  3TJQ A;  1MT1 A;  1XX6 A;  4B6D A;  2J9R A;  3KY9 A;  1TIH A;  2DIP A;  1MJA A;  2ORW A;  4OVO A;  1Z2I A;  3MEK A;  2SGD I;  2NU1 I;  1K7V A;  3E2I A;  2V1C A;  1M8B A;  2ENZ A;  1K7U A;  1PTR A;  1WGC A;  3QTL D;  3TOB A;  1UHA A;  2GKT I;  1HEV A;  3HH2 C;  3VDU A;  5EX3 A;  4E1P A;  1SGE I;  5E3P A;  2NU0 I;  5E3R A;  1FYB A;  2GKV A;  5JHW C;  2KMP A;  2OU2 A;  5FUW A;  2SGP I;  2CJS C;  1RFH A;  1SGQ I;  3OXF A;  3R5B A;  1X4S A;  4FKD A;  5DAE A;  3UOE A;  3SGB I;  3TO6 A;  2B8T A;  3QAH A;  2L7X A;  2ROW A;  7WGA A;  2NU3 I;  1MJ9 A;  1CSO I;  1OMU A;  1W4R A;  1WKX A;  4GI3 C;  1R79 A;  1TBN A;  1UVF A;  1K7T A;  2JZM A;  2N71 A;  1OMT A;  1TOT A;  2KMR A;  2SGF I;  2V1C C;  1YTP A;  1PCE A;  2BUS A;  3R5D A;  1CGI I;  1MJB A;  1PTQ A;  2QQD A;  1P9G A;  3E59 A;  2RIJ A;  4DNC A;  2GIV A;  1WTJ A;  1LR7 A;  5CCL A;  2QPO A;  1IY5 A;  3D00 A;  5FUX A;  1KMA A;  2A20 A;  3OVO A;  2WCY A;  1Z7K B;  2XRC A;  1CE3 A;  4L9M A;  2WGC A;  3QWP A;  1Y1C A;  3PDN A;  1ULK A;  3UFF A;  1FY7 A;  1SGD I;  4AML A;  3TOA A;  3OXG A;  1R0R I;  1VDD A;  3FSY A;  3FC3 A;  2FNF X;  1WGT A;  1UUC A;  1CT4 I;  1V1H A;  1Q9B A;  1ULN A;  1ULM A;  1XBT A;  2QQ0 A;  2VRW B;  1YU6 C;  3R5C A;  4UXH A;  5FUV A;  2F3C I;  1TUR A;  3SEK C;  3BJI A;  2JW6 A;  2GKR I;  4SGB I;  1CT0 I;  1CGJ I;  2LB7 A;  2N52 A;  2ODD A;  5EX0 A;  2P6A C;  4JCV E;  1SGY I;  2KMQ A;  1CHO I;  1TGS I;  2QQC A;  5J8C A;  1KBF A;  1IY6 A;  1S20 A;  2SGQ I;  3FSX A;  3RU0 A;  3SGQ I;  5J8F A;  1SGN I;  2UZ3 A;  1FAR A;  3UEJ A;  2B0U C;  2J87 A;  4WP4 A;  2NU4 I;  3UGI A;  2UVO A;  2CWH A;  2KCX A;  1V1I A;  1TBR R;  1XA6 A;  2KMO A;  2V53 A;  9WGA A;  1SGR I;  1TUS A;  2CWF A;  2QQE A;  1DS2 I;  5FUY A;  3CXL A;  2ERW A;  3VE5 A;  4E1R A;  2L8E A;  2JYY A;  3OXL A;  2LEO A;  4HGU A;  2LUY A;  1OVO A;  1LR8 A;  2K9H A;  1HPT A;  2JXD A;  2PQ8 A;  3UGD A;  2CWG A;  2M5X A;  5E3Q A;  2W0T A;  2ENN A;  4UXI A;  1H0Z A;  2X52 A;  1NXU A;  1N13 A;  2JA1 A;  5CCM A;  1M8C A;  1BUS A;  2YQP A;  1LR9 A;  2ELI A;  4MPI A;  3TO9 A;  2SGE I;  2X3T A;  1U5K A;  1IW4 A;  2GVI A;  1P9Z A;  4UXJ A;  3GOX A;  3B4V C;  3UEY A;  3TO7 A;  3OL0 A;  2OD1 A;  2E5R A;  5HQ8 A;  1FAQ A;  1PJU A;  1Y8F A;  2NU2 I;  2N1A B;  1NUB A;  3VDP A;  1DS3 I;  2OVO A;  2ARP F;  1W3S A;  1TBQ R;  2DKV A;  1AN1 I;  2N17 A;  1HJA I;  1KBE A;  2DB6 A;  1OYV I;  3UGL A;  4A24 A;  1HDL A;  1SGP I;  2RC4 A;  1X74 A;  1TBO A;  1Y1B A;  1BMO A;  2ORV A;  1CT2 I;  1UVG A;  2OZU A;  2WVJ A;  3R5A A;  5HI7 A;  2Y0M A; 
#chains in the Genus database with same CATH homology
 1PPF I;  2YUU A;  2E73 A;  3TJQ A;  1MT1 A;  1XX6 A;  4B6D A;  2J9R A;  3KY9 A;  1TIH A;  2DIP A;  4OVO A;  2ORW A;  3MEK A;  2SGD I;  2NU1 I;  3E2I A;  2V1C A;  1M8B A;  2ENZ A;  1PTR A;  3QTL D;  2GKT I;  3HH2 C;  3VDU A;  5EX3 A;  4E1P A;  1SGE I;  2NU0 I;  1FYB A;  2GKV A;  2KMP A;  5FUW A;  2SGP I;  2CJS C;  1RFH A;  1SGQ I;  3OXF A;  1X4S A;  4FKD A;  5DAE A;  3SGB I;  2B8T A;  2L7X A;  2ROW A;  2NU3 I;  1CSO I;  1OMU A;  1W4R A;  4GI3 C;  1R79 A;  1TBN A;  1UVF A;  2JZM A;  2N71 A;  1OMT A;  1TOT A;  2KMR A;  2SGF I;  2V1C C;  1YTP A;  1PCE A;  2BUS A;  1CGI I;  1PTQ A;  2QQD A;  3E59 A;  5CCL A;  1IY5 A;  1LR7 A;  2QPO A;  3D00 A;  5FUX A;  1KMA A;  2A20 A;  3OVO A;  2WCY A;  1Z7K B;  2XRC A;  1CE3 A;  4L9M A;  3QWP A;  1Y1C A;  3PDN A;  3UFF A;  1SGD I;  3OXG A;  1R0R I;  1VDD A;  3FC3 A;  2FNF X;  2QQ0 A;  1UUC A;  1CT4 I;  1XBT A;  1V1H A;  2VRW B;  4UXH A;  3UGL A;  3SEK C;  5JHW C;  1YU6 C;  5FUV A;  2F3C I;  1TUR A;  3BJI A;  2JW6 A;  2GKR I;  4SGB I;  1CT0 I;  1CGJ I;  2N52 A;  2ODD A;  5EX0 A;  2P6A C;  4JCV E;  1SGY I;  2KMQ A;  1CHO I;  1TGS I;  2QQC A;  1KBF A;  1IY6 A;  3SGQ I;  2SGQ I;  3RU0 A;  1SGN I;  2UZ3 A;  1FAR A;  3UEJ A;  2B0U C;  2J87 A;  2NU4 I;  3UGI A;  2KCX A;  1V1I A;  1TBR R;  1XA6 A;  2KMO A;  2V53 A;  1SGR I;  1TUS A;  2QQE A;  1DS2 I;  5FUY A;  3CXL A;  2ERW A;  3VE5 A;  4E1R A;  2L8E A;  2JYY A;  3OXL A;  2LEO A;  4HGU A;  2LUY A;  1OVO A;  1LR8 A;  2K9H A;  1HPT A;  2JXD A;  3UGD A;  2M5X A;  2W0T A;  2ENN A;  4UXI A;  1H0Z A;  2JA1 A;  1N13 A;  5CCM A;  1M8C A;  1BUS A;  2YQP A;  1LR9 A;  2ELI A;  1IW4 A;  2SGE I;  1U5K A;  2GVI A;  4UXJ A;  3GOX A;  3B4V C;  3UEY A;  3OL0 A;  2OD1 A;  2E5R A;  5HQ8 A;  1FAQ A;  1PJU A;  1Y8F A;  2NU2 I;  2N1A B;  1NUB A;  3VDP A;  1DS3 I;  2OVO A;  2ARP F;  1W3S A;  1TBQ R;  1AN1 I;  2N17 A;  1HJA I;  1KBE A;  2DB6 A;  1OYV I;  4A24 A;  1HDL A;  1SGP I;  1X74 A;  1TBO A;  1Y1B A;  1BMO A;  2ORV A;  1CT2 I;  1UVG A;  2WVJ A;  5HI7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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