1DS2I

Crystal structure of sgpb:omtky3-coo-leu18i
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
51
structure length
50
Chain Sequence
VDCSEYPKPACTEYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/hydrolase inhibitor
source organism Meleagris gallopavo
publication title Contribution of peptide bonds to inhibitor-protease binding: crystal structures of the turkey ovomucoid third domain backbone variants OMTKY3-Pro18I and OMTKY3-psi[COO]-Leu18I in complex with Streptomyces griseus proteinase B (SGPB) and the structure of the free inhibitor, OMTKY-3-psi[CH2NH2+]-Asp19I
pubmed doi rcsb
molecule keywords PROTEINASE B (SGPB)
total genus 13
structure length 50
sequence length 51
ec nomenclature
pdb deposition date 2000-01-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
I PF00050 Kazal_1 Kazal-type serine protease inhibitor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.30 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 1ds2I00
1YTPA 2SGFI 1SGQI 4HGUA 1SGYI 2P6AC 1IY5A 4SGBI 3SEKC 2SGQI 3SGBI 1CSOI 1BMOA 1Y1BA 1YU6C 3QTLD 1HJAI 2LEOA 1N13A 1UVFA 1CGJI 2M5XA 2KCXA 5JHWC 1TBRR 1CGII 2GKTI 1CT2I 1OMUA 2ARPF 1NUBA 1Z7KB 1IY6A 2NU4I 2GKRI 1TIHA 1PCEA 1SGRI 1TUSA 1OYVI 1KMAA 2N17A 1SGPI 1SGEI 2NU3I 3SGQI 1M8BA 1HPTA 1CT0I 1CT4I 2NU1I 2NU2I 2KMRA 1DS2I 1LR8A 2SGPI 2V53A 1IW4A 2KMPA 1BUSA 1AN1I 2WCYA 1CE3A 3OVOA 2NU0I 2JXDA 4GI3C 1FYBA 2JYYA 2SGEI 2F3CI 1R0RI 2GKVA 2JZMA 1H0ZA 1TBQR 4OVOA 3HH2C 1SGDI 2OVOA 2QQCA 1LR9A 2SGDI 1MT1A 2B0UC 5DAEA 1PJUA 1DS3I 1PPFI 1Y1CA 2XRCA 2N52A 1M8CA 2QQDA 1TURA 1TGSI 1HDLA 1CHOI 2N71A 2KMOA 3TJQA 1OMTA 1SGNI 1OVOA 1UVGA 3B4VC 2KMQA 2BUSA 1UUCA 1LR7A 2ERWA
chains in the Genus database with same CATH superfamily
3UEJA 3R5CA 1WGTA 3QAHA 1YTPA 2SGFI 3R5BA 5EX0A 1SGQI 5HQ8A 1VDDA 2CJSC 3E2IA 3E59A 4HGUA 4E1PA 1V1IA 1SGYI 2DIPA 2Y0MA 1U5KA 2P6AC 2K9HA 2V1CA 4AMLA 1IY5A 5FUXA 4SGBI 3SEKC 2N1AB 2V1CC 3OXGA 3UEYA 2SGQI 3SGBI 3BJIA 3D00A 3OL0A 1CSOI 1BMOA 4UXIA 1Y1BA 1YU6C 2OD1A 1XA6A 2ORWA 2B8TA 3QTLD 1K7UA 1HJAI 2E73A 2LEOA 2ORVA 1Q9BA 1N13A 1UVFA 2RIJA 1CGJI 5J8FA 2W0TA 2M5XA 2KCXA 3OXFA 1MJAA 1K7TA 1NXUA 5JHWC 1TBRR 1CGII 2CWHA 1TOTA 1ULMA 1P9ZA 2CWFA 1CT2I 2GKTI 1OMUA 1WGCA 2J9RA 3RU0A 2ARPF 1MJBA 1NUBA 1Z7KB 2X3TA 3VE5A 5HI7A 5CCMA 1IY6A 2NU4I 3TO7A 1ULKA 1TBNA 1TIHA 2GKRI 1PCEA 1SGRI 3UOEA 1TUSA 2OU2A 2RC4A 1OYVI 1PTRA 1KMAA 1FAQA 2N17A 2GIVA 1SGPI 2JA1A 2L8EA 2A20A 2YQPA 3MEKA 3FC3A 1SGEI 2NU3I 1ULNA 1WKXA 2ENNA 4JCVE 1S20A 3SGQI 1M8BA 1TBOA 1HPTA 3TO6A 5E3PA 9WGAA 1CT0I 2DKVA 2ELIA 2ODDA 3KY9A 5FUYA 3UGLA 4B6DA 1CT4I 2J87A 2CWGA 2KMRA 2NU1I 2NU2I 2UVOA 5FUWA 1DS2I 1LR8A 2SGPI 2V53A 1IW4A 2KMPA 4A24A 1Y8FA 2OZUA 2QPOA 3R5AA 2X52A 5EX3A 1BUSA 1AN1I 2QQEA 2WCYA 2LB7A 1XBTA 1CE3A 5E3RA 1XX6A 3OVOA 1MJ9A 3R5DA 2NU0I 1K7VA 2JXDA 1WTJA 2PQ8A 2QQ0A 2FNFX 4GI3C 5J8CA 3PDNA 4UXHA 1V1HA 1FYBA 2JYYA 2SGEI 3OXLA 1KBEA 1W3SA 2F3CI 1R0RI 2UZ3A 3FSYA 2GKVA 5E3QA 5CCLA 2WVJA 3UGIA 2ROWA 2JZMA 2WGCA 1H0ZA 3TOAA 4E1RA 1PTQA 1TBQR 2GVIA 3HH2C 4OVOA 1SGDI 2OVOA 2QQCA 3VDUA 4DNCA 4MPIA 1LR9A 5FUVA 2SGDI 4UXJA 1FARA 1MT1A 2B0UC 2ENZA 4FKDA 5DAEA 1PJUA 2LUYA 1DS3I 1PPFI 1Y1CA 1Z2IA 2XRCA 2YUUA 3FSXA 4WP4A 2N52A 3VDPA 1FY7A 1M8CA 2QQDA 3TOBA 1X4SA 2DB6A 3CXLA 1TURA 2L7XA 1HEVA 1RFHA 1TGSI 1HDLA 1CHOI 1UHAA 2KMOA 2N71A 3TO9A 3UGDA 1P9GA 3TJQA 7WGAA 1OMTA 1R79A 1SGNI 1OVOA 2VRWB 3GOXA 1UVGA 1KBFA 3UFFA 3B4VC 2KMQA 1X74A 2BUSA 1UUCA 1LR7A 3QWPA 4L9MA 2E5RA 2ERWA 2JW6A 1W4RA
chains in the Genus database with same CATH topology
3UEJA 1YTPA 2SGFI 5EX0A 1SGQI 5HQ8A 1VDDA 2CJSC 3E2IA 3E59A 4HGUA 4E1PA 1V1IA 1SGYI 2DIPA 1U5KA 2P6AC 2K9HA 2V1CA 1IY5A 5FUXA 4SGBI 3SEKC 2N1AB 2V1CC 3OXGA 3UEYA 2SGQI 3SGBI 3BJIA 3D00A 3OL0A 1CSOI 1BMOA 4UXIA 1Y1BA 1YU6C 2OD1A 1XA6A 2ORWA 2B8TA 3QTLD 1HJAI 2E73A 2LEOA 2ORVA 1N13A 1UVFA 1CGJI 2W0TA 2M5XA 2KCXA 3OXFA 5JHWC 1TBRR 1CGII 1TOTA 2GKTI 2J9RA 3RU0A 1CT2I 1OMUA 2ARPF 1NUBA 3VE5A 1Z7KB 5HI7A 5CCMA 1IY6A 2NU4I 1TBNA 1TIHA 2GKRI 1PCEA 1SGRI 1TUSA 1OYVI 1PTRA 1KMAA 1FAQA 2N17A 1SGPI 2JA1A 2L8EA 2A20A 2YQPA 3MEKA 3FC3A 1SGEI 2NU3I 4JCVE 2ENNA 3SGQI 1M8BA 1TBOA 1HPTA 1CT0I 2ELIA 2ODDA 3KY9A 5FUYA 3UGLA 4B6DA 1CT4I 2J87A 2NU1I 2KMRA 2NU2I 5FUWA 1DS2I 1LR8A 2SGPI 2V53A 1IW4A 2KMPA 4A24A 1Y8FA 2QPOA 5EX3A 1BUSA 1AN1I 2QQEA 2WCYA 1XBTA 1CE3A 1XX6A 3OVOA 2NU0I 2JXDA 2QQ0A 2FNFX 4GI3C 3PDNA 4UXHA 1V1HA 1FYBA 2JYYA 2SGEI 3OXLA 1KBEA 1W3SA 2F3CI 1R0RI 2UZ3A 2GKVA 5CCLA 2WVJA 3UGIA 2ROWA 2JZMA 1H0ZA 4E1RA 1PTQA 1TBQR 2GVIA 3HH2C 4OVOA 1SGDI 2OVOA 2QQCA 3VDUA 1LR9A 5FUVA 2SGDI 4UXJA 1FARA 1MT1A 2B0UC 2ENZA 4FKDA 5DAEA 1PJUA 2LUYA 1DS3I 1PPFI 1Y1CA 2XRCA 2YUUA 2N52A 3VDPA 1M8CA 2QQDA 1X4SA 2DB6A 3CXLA 1TURA 2L7XA 1RFHA 1TGSI 1HDLA 1CHOI 2N71A 2KMOA 3UGDA 3TJQA 1OMTA 1R79A 1SGNI 1OVOA 2VRWB 3GOXA 1UVGA 1KBFA 3UFFA 3B4VC 2KMQA 1X74A 2BUSA 1UUCA 1LR7A 3QWPA 4L9MA 2E5RA 2ERWA 2JW6A 1W4RA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YTP A;  2SGF I;  1SGQ I;  4HGU A;  1SGY I;  2P6A C;  1IY5 A;  4SGB I;  3SEK C;  2SGQ I;  3SGB I;  1CSO I;  1BMO A;  1Y1B A;  1YU6 C;  3QTL D;  1HJA I;  2LEO A;  1N13 A;  1UVF A;  1CGJ I;  2M5X A;  2KCX A;  5JHW C;  1TBR R;  1CGI I;  2GKT I;  1CT2 I;  1OMU A;  2ARP F;  1NUB A;  1Z7K B;  1IY6 A;  2NU4 I;  2GKR I;  1TIH A;  1PCE A;  1SGR I;  1TUS A;  1OYV I;  1KMA A;  2N17 A;  1SGP I;  1SGE I;  2NU3 I;  3SGQ I;  1M8B A;  1HPT A;  1CT0 I;  1CT4 I;  2NU1 I;  2NU2 I;  2KMR A;  1DS2 I;  1LR8 A;  2SGP I;  2V53 A;  1IW4 A;  2KMP A;  1BUS A;  1AN1 I;  2WCY A;  1CE3 A;  3OVO A;  2NU0 I;  2JXD A;  4GI3 C;  1FYB A;  2JYY A;  2SGE I;  2F3C I;  1R0R I;  2GKV A;  2JZM A;  1H0Z A;  1TBQ R;  4OVO A;  3HH2 C;  1SGD I;  2OVO A;  2QQC A;  1LR9 A;  2SGD I;  1MT1 A;  2B0U C;  5DAE A;  1PJU A;  1DS3 I;  1PPF I;  1Y1C A;  2XRC A;  2N52 A;  1M8C A;  2QQD A;  1TUR A;  1TGS I;  1HDL A;  1CHO I;  2N71 A;  2KMO A;  3TJQ A;  1OMT A;  1SGN I;  1OVO A;  1UVG A;  3B4V C;  2KMQ A;  2BUS A;  1UUC A;  1LR7 A;  2ERW A; 
#chains in the Genus database with same CATH topology
 3UEJ A;  3R5C A;  1WGT A;  3QAH A;  1YTP A;  2SGF I;  3R5B A;  5EX0 A;  1SGQ I;  5HQ8 A;  1VDD A;  2CJS C;  3E2I A;  3E59 A;  4HGU A;  4E1P A;  1V1I A;  1SGY I;  2DIP A;  2Y0M A;  1U5K A;  2P6A C;  2K9H A;  2V1C A;  4AML A;  1IY5 A;  5FUX A;  4SGB I;  3SEK C;  2N1A B;  2V1C C;  3OXG A;  3UEY A;  2SGQ I;  3SGB I;  3BJI A;  3D00 A;  3OL0 A;  1CSO I;  1BMO A;  4UXI A;  1Y1B A;  1YU6 C;  2OD1 A;  1XA6 A;  2ORW A;  2B8T A;  3QTL D;  1K7U A;  1HJA I;  2E73 A;  2LEO A;  2ORV A;  1Q9B A;  1N13 A;  1UVF A;  2RIJ A;  1CGJ I;  5J8F A;  2W0T A;  2M5X A;  2KCX A;  3OXF A;  1MJA A;  1K7T A;  1NXU A;  5JHW C;  1TBR R;  1CGI I;  2CWH A;  1TOT A;  1ULM A;  1P9Z A;  2CWF A;  1CT2 I;  2GKT I;  1OMU A;  1WGC A;  2J9R A;  3RU0 A;  2ARP F;  1MJB A;  1NUB A;  1Z7K B;  2X3T A;  3VE5 A;  5HI7 A;  5CCM A;  1IY6 A;  2NU4 I;  3TO7 A;  1ULK A;  1TBN A;  1TIH A;  2GKR I;  1PCE A;  1SGR I;  3UOE A;  1TUS A;  2OU2 A;  2RC4 A;  1OYV I;  1PTR A;  1KMA A;  1FAQ A;  2N17 A;  2GIV A;  1SGP I;  2JA1 A;  2L8E A;  2A20 A;  2YQP A;  3MEK A;  3FC3 A;  1SGE I;  2NU3 I;  1ULN A;  1WKX A;  2ENN A;  4JCV E;  1S20 A;  3SGQ I;  1M8B A;  1TBO A;  1HPT A;  3TO6 A;  5E3P A;  9WGA A;  1CT0 I;  2DKV A;  2ELI A;  2ODD A;  3KY9 A;  5FUY A;  3UGL A;  4B6D A;  1CT4 I;  2J87 A;  2CWG A;  2KMR A;  2NU1 I;  2NU2 I;  2UVO A;  5FUW A;  1DS2 I;  1LR8 A;  2SGP I;  2V53 A;  1IW4 A;  2KMP A;  4A24 A;  1Y8F A;  2OZU A;  2QPO A;  3R5A A;  2X52 A;  5EX3 A;  1BUS A;  1AN1 I;  2QQE A;  2WCY A;  2LB7 A;  1XBT A;  1CE3 A;  5E3R A;  1XX6 A;  3OVO A;  1MJ9 A;  3R5D A;  2NU0 I;  1K7V A;  2JXD A;  1WTJ A;  2PQ8 A;  2QQ0 A;  2FNF X;  4GI3 C;  5J8C A;  3PDN A;  4UXH A;  1V1H A;  1FYB A;  2JYY A;  2SGE I;  3OXL A;  1KBE A;  1W3S A;  2F3C I;  1R0R I;  2UZ3 A;  3FSY A;  2GKV A;  5E3Q A;  5CCL A;  2WVJ A;  3UGI A;  2ROW A;  2JZM A;  2WGC A;  1H0Z A;  3TOA A;  4E1R A;  1PTQ A;  1TBQ R;  2GVI A;  3HH2 C;  4OVO A;  1SGD I;  2OVO A;  2QQC A;  3VDU A;  4DNC A;  4MPI A;  1LR9 A;  5FUV A;  2SGD I;  4UXJ A;  1FAR A;  1MT1 A;  2B0U C;  2ENZ A;  4FKD A;  5DAE A;  1PJU A;  2LUY A;  1DS3 I;  1PPF I;  1Y1C A;  1Z2I A;  2XRC A;  2YUU A;  3FSX A;  4WP4 A;  2N52 A;  3VDP A;  1FY7 A;  1M8C A;  2QQD A;  3TOB A;  1X4S A;  2DB6 A;  3CXL A;  1TUR A;  2L7X A;  1HEV A;  1RFH A;  1TGS I;  1HDL A;  1CHO I;  1UHA A;  2KMO A;  2N71 A;  3TO9 A;  3UGD A;  1P9G A;  3TJQ A;  7WGA A;  1OMT A;  1R79 A;  1SGN I;  1OVO A;  2VRW B;  3GOX A;  1UVG A;  1KBF A;  3UFF A;  3B4V C;  2KMQ A;  1X74 A;  2BUS A;  1UUC A;  1LR7 A;  3QWP A;  4L9M A;  2E5R A;  2ERW A;  2JW6 A;  1W4R A; 
#chains in the Genus database with same CATH homology
 3UEJ A;  1YTP A;  2SGF I;  5EX0 A;  1SGQ I;  5HQ8 A;  1VDD A;  2CJS C;  3E2I A;  3E59 A;  4HGU A;  4E1P A;  1V1I A;  1SGY I;  2DIP A;  1U5K A;  2P6A C;  2K9H A;  2V1C A;  1IY5 A;  5FUX A;  4SGB I;  3SEK C;  2N1A B;  2V1C C;  3OXG A;  3UEY A;  2SGQ I;  3SGB I;  3BJI A;  3D00 A;  3OL0 A;  1CSO I;  1BMO A;  4UXI A;  1Y1B A;  1YU6 C;  2OD1 A;  1XA6 A;  2ORW A;  2B8T A;  3QTL D;  1HJA I;  2E73 A;  2LEO A;  2ORV A;  1N13 A;  1UVF A;  1CGJ I;  2W0T A;  2M5X A;  2KCX A;  3OXF A;  5JHW C;  1TBR R;  1CGI I;  1TOT A;  2GKT I;  2J9R A;  3RU0 A;  1CT2 I;  1OMU A;  2ARP F;  1NUB A;  3VE5 A;  1Z7K B;  5HI7 A;  5CCM A;  1IY6 A;  2NU4 I;  1TBN A;  1TIH A;  2GKR I;  1PCE A;  1SGR I;  1TUS A;  1OYV I;  1PTR A;  1KMA A;  1FAQ A;  2N17 A;  1SGP I;  2JA1 A;  2L8E A;  2A20 A;  2YQP A;  3MEK A;  3FC3 A;  1SGE I;  2NU3 I;  4JCV E;  2ENN A;  3SGQ I;  1M8B A;  1TBO A;  1HPT A;  1CT0 I;  2ELI A;  2ODD A;  3KY9 A;  5FUY A;  3UGL A;  4B6D A;  1CT4 I;  2J87 A;  2NU1 I;  2KMR A;  2NU2 I;  5FUW A;  1DS2 I;  1LR8 A;  2SGP I;  2V53 A;  1IW4 A;  2KMP A;  4A24 A;  1Y8F A;  2QPO A;  5EX3 A;  1BUS A;  1AN1 I;  2QQE A;  2WCY A;  1XBT A;  1CE3 A;  1XX6 A;  3OVO A;  2NU0 I;  2JXD A;  2QQ0 A;  2FNF X;  4GI3 C;  3PDN A;  4UXH A;  1V1H A;  1FYB A;  2JYY A;  2SGE I;  3OXL A;  1KBE A;  1W3S A;  2F3C I;  1R0R I;  2UZ3 A;  2GKV A;  5CCL A;  2WVJ A;  3UGI A;  2ROW A;  2JZM A;  1H0Z A;  4E1R A;  1PTQ A;  1TBQ R;  2GVI A;  3HH2 C;  4OVO A;  1SGD I;  2OVO A;  2QQC A;  3VDU A;  1LR9 A;  5FUV A;  2SGD I;  4UXJ A;  1FAR A;  1MT1 A;  2B0U C;  2ENZ A;  4FKD A;  5DAE A;  1PJU A;  2LUY A;  1DS3 I;  1PPF I;  1Y1C A;  2XRC A;  2YUU A;  2N52 A;  3VDP A;  1M8C A;  2QQD A;  1X4S A;  2DB6 A;  3CXL A;  1TUR A;  2L7X A;  1RFH A;  1TGS I;  1HDL A;  1CHO I;  2N71 A;  2KMO A;  3UGD A;  3TJQ A;  1OMT A;  1R79 A;  1SGN I;  1OVO A;  2VRW B;  3GOX A;  1UVG A;  1KBF A;  3UFF A;  3B4V C;  2KMQ A;  1X74 A;  2BUS A;  1UUC A;  1LR7 A;  3QWP A;  4L9M A;  2E5R A;  2ERW A;  2JW6 A;  1W4R A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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