1DS3I

Crystal structure of omtky3-ch2-asp19i
Total Genus 12
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
51
structure length
50
Chain Sequence
VDCSEYPKPACTDYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase inhibitor
molecule keywords OVOMUCOID
publication title Contribution of peptide bonds to inhibitor-protease binding: crystal structures of the turkey ovomucoid third domain backbone variants OMTKY3-Pro18I and OMTKY3-psi[COO]-Leu18I in complex with Streptomyces griseus proteinase B (SGPB) and the structure of the free inhibitor, OMTKY-3-psi[CH2NH2+]-Asp19I
pubmed doi rcsb
source organism Meleagris gallopavo
total genus 12
structure length 50
sequence length 51
ec nomenclature
pdb deposition date 2000-01-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
I PF00050 Kazal_1 Kazal-type serine protease inhibitor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.30 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 1ds3I00
1YU6C 1SGNI 1SGRI 2KMOA 1KMAA 2SGDI 1SGEI 1SGYI 2NU0I 2ERWA 1TUSA 2NU1I 1DS3I 2N17A 1SGQI 1TBQR 2V53A 1SGPI 1OMTA 3SEKC 1N13A 2GKVA 4HGUA 1CGII 1TBRR 1DS2I 4OVOA 2QQDA 1UVGA 2OVOA 2BUSA 1NUBA 2JYYA 2N71A 1FYBA 1YTPA 2JZMA 1BMOA 2NU2I 3SGBI 1R0RI 1Z7KB 1LR9A 1TGSI 3TJQA 3HH2C 1PCEA 2NU4I 5JHWC 2P6AC 2GKTI 2M5XA 2KMRA 2ARPF 1IY5A 2SGFI 4SGBI 1M8CA 1AN1I 1M8BA 2NU3I 1Y1BA 2KCXA 1MT1A 2SGQI 3QTLD 1LR8A 1PPFI 2SGPI 2F3CI 1OYVI 1TIHA 1IW4A 2QQCA 1CHOI 3SGQI 1Y1CA 1CT4I 1HDLA 1CT0I 2SGEI 2GKRI 1PJUA 1H0ZA 2B0UC 1LR7A 1TURA 2N52A 3B4VC 1OMUA 1OVOA 1CT2I 1IY6A 1CSOI 2WCYA 2KMPA 2LEOA 1CGJI 2KMQA 1HPTA 1SGDI 2JXDA 2XRCA 3OVOA 4GI3C 1CE3A 1HJAI 1UUCA 1BUSA 5DAEA 1UVFA
chains in the Genus database with same CATH superfamily
1YU6C 1SGNI 3TOAA 1SGRI 2KMOA 1KMAA 2V1CA 4B6DA 1WTJA 2SGDI 3R5CA 3UOEA 1UHAA 1WKXA 4JCVE 3R5BA 3OXGA 1HEVA 1SGEI 2E73A 2A20A 2ROWA 1KBEA 2DKVA 2N1AB 4L9MA 3R5AA 1SGYI 2ORVA 5FUYA 2NU0I 4UXHA 2ERWA 1RFHA 1TUSA 2NU1I 5FUWA 3TO7A 1DS3I 2ODDA 3FSXA 2CJSC 1SGQI 1TBQR 2N17A 3KY9A 2V53A 1U5KA 3TO6A 2RC4A 1SGPI 2LB7A 1OMTA 2QPOA 1V1IA 3SEKC 1FAQA 2J87A 2J9RA 1N13A 2LUYA 5EX0A 3GOXA 1V1HA 2GKVA 1TBOA 1W4RA 4HGUA 1CGII 3UEJA 1TBRR 1ULKA 5DAEA 1FY7A 3MEKA 4FKDA 3TOBA 1DS2I 1K7VA 4E1PA 2JA1A 5J8CA 4OVOA 3VE5A 2QQDA 2K9HA 1UVGA 2GIVA 2OVOA 2X3TA 2BUSA 3UFFA 1ULNA 3FC3A 1IY6A 1NUBA 2JYYA 1FARA 2N71A 1FYBA 1YTPA 2L7XA 2JZMA 1PTRA 1BMOA 1WGCA 4AMLA 2NU2I 7WGAA 2WVJA 3SGBI 1R0RI 1Z7KB 1LR9A 1TGSI 2E5RA 1TBNA 2DIPA 3TJQA 3HH2C 1PCEA 1PTQA 1KBFA 2NU4I 5JHWC 3QAHA 1X74A 2P6AC 1WGTA 4UXIA 2GKTI 2M5XA 2OD1A 1XBTA 2KMRA 2ARPF 1IY5A 2YUUA 3UGLA 2ELIA 5E3PA 3UGDA 2SGFI 4SGBI 2QQEA 1M8CA 1XA6A 1AN1I 2L8EA 1K7UA 1M8BA 2NU3I 3FSYA 4UXJA 2FNFX 1Y1BA 3TO9A 2KCXA 3UGIA 1MT1A 3OXLA 2SGQI 3QTLD 2OZUA 5HI7A 3QWPA 1LR8A 1PPFI 2SGPI 2F3CI 5E3QA 2UVOA 1OYVI 1TIHA 1IW4A 2QQCA 1CHOI 3CXLA 1TOTA 1Y1CA 3SGQI 5CCLA 2ENZA 1CT4I 1HDLA 4DNCA 3E2IA 2ORWA 1CT0I 2SGEI 5HQ8A 2GKRI 1PJUA 1H0ZA 1ULMA 2RIJA 5FUVA 1VDDA 3UEYA 2Y0MA 1LR7A 2B0UC 5E3RA 1Y8FA 3VDPA 1TURA 2N52A 2ENNA 1MJ9A 2UZ3A 1NXUA 2X52A 2JW6A 3B4VC 1OMUA 1OVOA 1CT2I 3R5DA 5EX3A 1CSOI 2OU2A 3D00A 4WP4A 3RU0A 1P9ZA 1Q9BA 1P9GA 2B8TA 2YQPA 3OL0A 2WCYA 3OXFA 2KMPA 2CWHA 2LEOA 1XX6A 1CGJI 2KMQA 3BJIA 1HPTA 1SGDI 2JXDA 2PQ8A 2XRCA 3PDNA 2CWGA 4MPIA 5J8FA 2DB6A 1Z2IA 3OVOA 4GI3C 1CE3A 9WGAA 1HJAI 1R79A 2WGCA 2QQ0A 4A24A 1X4SA 3VDUA 1MJAA 2CWFA 4E1RA 1S20A 1MJBA 1UUCA 1BUSA 3E59A 5FUXA 2V1CC 1K7TA 5CCMA 1UVFA 2VRWB 2W0TA 1W3SA 2GVIA
chains in the Genus database with same CATH topology
1YU6C 1SGNI 1SGRI 2KMOA 1KMAA 2V1CA 4B6DA 2SGDI 4JCVE 3OXGA 1SGEI 2E73A 2A20A 2ROWA 1KBEA 4L9MA 2N1AB 1SGYI 2ORVA 5FUYA 2NU0I 4UXHA 2ERWA 1RFHA 1TUSA 2NU1I 5FUWA 1DS3I 2ODDA 2CJSC 1SGQI 1TBQR 2N17A 3KY9A 2V53A 1U5KA 1SGPI 1OMTA 2QPOA 1V1IA 3SEKC 1FAQA 2J87A 2J9RA 1N13A 2LUYA 5EX0A 3GOXA 1V1HA 2GKVA 1TBOA 1W4RA 4HGUA 1CGII 3UEJA 1TBRR 5DAEA 3MEKA 4FKDA 1DS2I 4E1PA 2JA1A 4OVOA 3VE5A 2QQDA 2K9HA 1UVGA 2OVOA 3UFFA 2BUSA 3FC3A 1NUBA 2JYYA 1FARA 2N71A 1FYBA 1YTPA 2L7XA 2JZMA 1PTRA 1BMOA 2NU2I 2WVJA 3SGBI 1R0RI 1Z7KB 1LR9A 1TGSI 2E5RA 1TBNA 2DIPA 3TJQA 3HH2C 1PCEA 1PTQA 1KBFA 2NU4I 5JHWC 1X74A 2P6AC 4UXIA 2GKTI 2M5XA 2OD1A 1XBTA 2KMRA 2ARPF 1IY5A 2YUUA 3UGLA 2ELIA 3UGDA 2SGFI 4SGBI 2QQEA 1M8CA 1XA6A 1AN1I 2L8EA 1M8BA 2NU3I 4UXJA 2FNFX 1Y1BA 2KCXA 3UGIA 1MT1A 3OXLA 2SGQI 3QTLD 5HI7A 3QWPA 1LR8A 1PPFI 2SGPI 2F3CI 1OYVI 1TIHA 1IW4A 2QQCA 1CHOI 3CXLA 1TOTA 1Y1CA 3SGQI 5CCLA 2ENZA 1CT4I 1HDLA 3E2IA 2ORWA 1CT0I 2SGEI 5HQ8A 2GKRI 1PJUA 1H0ZA 5FUVA 1VDDA 3UEYA 2B0UC 1LR7A 1Y8FA 3VDPA 1TURA 2N52A 2ENNA 2UZ3A 2JW6A 3B4VC 1OMUA 1OVOA 1CT2I 5EX3A 1IY6A 1CSOI 3D00A 3RU0A 2B8TA 2YQPA 3OL0A 2WCYA 3OXFA 2KMPA 2LEOA 1XX6A 1CGJI 2KMQA 3BJIA 1HPTA 1SGDI 2JXDA 2XRCA 3PDNA 2DB6A 3OVOA 4GI3C 1CE3A 1HJAI 1R79A 4A24A 2QQ0A 1X4SA 3VDUA 4E1RA 1UUCA 1BUSA 3E59A 5FUXA 2V1CC 5CCMA 1UVFA 2VRWB 2W0TA 1W3SA 2GVIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YU6 C;  1SGN I;  1SGR I;  2KMO A;  1KMA A;  2SGD I;  1SGE I;  1SGY I;  2NU0 I;  2ERW A;  1TUS A;  2NU1 I;  1DS3 I;  2N17 A;  1SGQ I;  1TBQ R;  2V53 A;  1SGP I;  1OMT A;  3SEK C;  1N13 A;  2GKV A;  4HGU A;  1CGI I;  1TBR R;  1DS2 I;  4OVO A;  2QQD A;  1UVG A;  2OVO A;  2BUS A;  1NUB A;  2JYY A;  2N71 A;  1FYB A;  1YTP A;  2JZM A;  1BMO A;  2NU2 I;  3SGB I;  1R0R I;  1Z7K B;  1LR9 A;  1TGS I;  3TJQ A;  3HH2 C;  1PCE A;  2NU4 I;  5JHW C;  2P6A C;  2GKT I;  2M5X A;  2KMR A;  2ARP F;  1IY5 A;  2SGF I;  4SGB I;  1M8C A;  1AN1 I;  1M8B A;  2NU3 I;  1Y1B A;  2KCX A;  1MT1 A;  2SGQ I;  3QTL D;  1LR8 A;  1PPF I;  2SGP I;  2F3C I;  1OYV I;  1TIH A;  1IW4 A;  2QQC A;  1CHO I;  3SGQ I;  1Y1C A;  1CT4 I;  1HDL A;  1CT0 I;  2SGE I;  2GKR I;  1PJU A;  1H0Z A;  2B0U C;  1LR7 A;  1TUR A;  2N52 A;  3B4V C;  1OMU A;  1OVO A;  1CT2 I;  1IY6 A;  1CSO I;  2WCY A;  2KMP A;  2LEO A;  1CGJ I;  2KMQ A;  1HPT A;  1SGD I;  2JXD A;  2XRC A;  3OVO A;  4GI3 C;  1CE3 A;  1HJA I;  1UUC A;  1BUS A;  5DAE A;  1UVF A; 
#chains in the Genus database with same CATH topology
 1YU6 C;  1SGN I;  3TOA A;  1SGR I;  2KMO A;  1KMA A;  2V1C A;  4B6D A;  1WTJ A;  2SGD I;  3R5C A;  3UOE A;  1UHA A;  1WKX A;  4JCV E;  3R5B A;  3OXG A;  1HEV A;  1SGE I;  2E73 A;  2A20 A;  2ROW A;  1KBE A;  2DKV A;  2N1A B;  4L9M A;  3R5A A;  1SGY I;  2ORV A;  5FUY A;  2NU0 I;  4UXH A;  2ERW A;  1RFH A;  1TUS A;  2NU1 I;  5FUW A;  3TO7 A;  1DS3 I;  2ODD A;  3FSX A;  2CJS C;  1SGQ I;  1TBQ R;  2N17 A;  3KY9 A;  2V53 A;  1U5K A;  3TO6 A;  2RC4 A;  1SGP I;  2LB7 A;  1OMT A;  2QPO A;  1V1I A;  3SEK C;  1FAQ A;  2J87 A;  2J9R A;  1N13 A;  2LUY A;  5EX0 A;  3GOX A;  1V1H A;  2GKV A;  1TBO A;  1W4R A;  4HGU A;  1CGI I;  3UEJ A;  1TBR R;  1ULK A;  5DAE A;  1FY7 A;  3MEK A;  4FKD A;  3TOB A;  1DS2 I;  1K7V A;  4E1P A;  2JA1 A;  5J8C A;  4OVO A;  3VE5 A;  2QQD A;  2K9H A;  1UVG A;  2GIV A;  2OVO A;  2X3T A;  2BUS A;  3UFF A;  1ULN A;  3FC3 A;  1IY6 A;  1NUB A;  2JYY A;  1FAR A;  2N71 A;  1FYB A;  1YTP A;  2L7X A;  2JZM A;  1PTR A;  1BMO A;  1WGC A;  4AML A;  2NU2 I;  7WGA A;  2WVJ A;  3SGB I;  1R0R I;  1Z7K B;  1LR9 A;  1TGS I;  2E5R A;  1TBN A;  2DIP A;  3TJQ A;  3HH2 C;  1PCE A;  1PTQ A;  1KBF A;  2NU4 I;  5JHW C;  3QAH A;  1X74 A;  2P6A C;  1WGT A;  4UXI A;  2GKT I;  2M5X A;  2OD1 A;  1XBT A;  2KMR A;  2ARP F;  1IY5 A;  2YUU A;  3UGL A;  2ELI A;  5E3P A;  3UGD A;  2SGF I;  4SGB I;  2QQE A;  1M8C A;  1XA6 A;  1AN1 I;  2L8E A;  1K7U A;  1M8B A;  2NU3 I;  3FSY A;  4UXJ A;  2FNF X;  1Y1B A;  3TO9 A;  2KCX A;  3UGI A;  1MT1 A;  3OXL A;  2SGQ I;  3QTL D;  2OZU A;  5HI7 A;  3QWP A;  1LR8 A;  1PPF I;  2SGP I;  2F3C I;  5E3Q A;  2UVO A;  1OYV I;  1TIH A;  1IW4 A;  2QQC A;  1CHO I;  3CXL A;  1TOT A;  1Y1C A;  3SGQ I;  5CCL A;  2ENZ A;  1CT4 I;  1HDL A;  4DNC A;  3E2I A;  2ORW A;  1CT0 I;  2SGE I;  5HQ8 A;  2GKR I;  1PJU A;  1H0Z A;  1ULM A;  2RIJ A;  5FUV A;  1VDD A;  3UEY A;  2Y0M A;  1LR7 A;  2B0U C;  5E3R A;  1Y8F A;  3VDP A;  1TUR A;  2N52 A;  2ENN A;  1MJ9 A;  2UZ3 A;  1NXU A;  2X52 A;  2JW6 A;  3B4V C;  1OMU A;  1OVO A;  1CT2 I;  3R5D A;  5EX3 A;  1CSO I;  2OU2 A;  3D00 A;  4WP4 A;  3RU0 A;  1P9Z A;  1Q9B A;  1P9G A;  2B8T A;  2YQP A;  3OL0 A;  2WCY A;  3OXF A;  2KMP A;  2CWH A;  2LEO A;  1XX6 A;  1CGJ I;  2KMQ A;  3BJI A;  1HPT A;  1SGD I;  2JXD A;  2PQ8 A;  2XRC A;  3PDN A;  2CWG A;  4MPI A;  5J8F A;  2DB6 A;  1Z2I A;  3OVO A;  4GI3 C;  1CE3 A;  9WGA A;  1HJA I;  1R79 A;  2WGC A;  2QQ0 A;  4A24 A;  1X4S A;  3VDU A;  1MJA A;  2CWF A;  4E1R A;  1S20 A;  1MJB A;  1UUC A;  1BUS A;  3E59 A;  5FUX A;  2V1C C;  1K7T A;  5CCM A;  1UVF A;  2VRW B;  2W0T A;  1W3S A;  2GVI A; 
#chains in the Genus database with same CATH homology
 1YU6 C;  1SGN I;  1SGR I;  2KMO A;  1KMA A;  2V1C A;  4B6D A;  2SGD I;  4JCV E;  3OXG A;  1SGE I;  2E73 A;  2A20 A;  2ROW A;  1KBE A;  4L9M A;  2N1A B;  1SGY I;  2ORV A;  5FUY A;  2NU0 I;  4UXH A;  2ERW A;  1RFH A;  1TUS A;  2NU1 I;  5FUW A;  1DS3 I;  2ODD A;  2CJS C;  1SGQ I;  1TBQ R;  2N17 A;  3KY9 A;  2V53 A;  1U5K A;  1SGP I;  1OMT A;  2QPO A;  1V1I A;  3SEK C;  1FAQ A;  2J87 A;  2J9R A;  1N13 A;  2LUY A;  5EX0 A;  3GOX A;  1V1H A;  2GKV A;  1TBO A;  1W4R A;  4HGU A;  1CGI I;  3UEJ A;  1TBR R;  5DAE A;  3MEK A;  4FKD A;  1DS2 I;  4E1P A;  2JA1 A;  4OVO A;  3VE5 A;  2QQD A;  2K9H A;  1UVG A;  2OVO A;  3UFF A;  2BUS A;  3FC3 A;  1NUB A;  2JYY A;  1FAR A;  2N71 A;  1FYB A;  1YTP A;  2L7X A;  2JZM A;  1PTR A;  1BMO A;  2NU2 I;  2WVJ A;  3SGB I;  1R0R I;  1Z7K B;  1LR9 A;  1TGS I;  2E5R A;  1TBN A;  2DIP A;  3TJQ A;  3HH2 C;  1PCE A;  1PTQ A;  1KBF A;  2NU4 I;  5JHW C;  1X74 A;  2P6A C;  4UXI A;  2GKT I;  2M5X A;  2OD1 A;  1XBT A;  2KMR A;  2ARP F;  1IY5 A;  2YUU A;  3UGL A;  2ELI A;  3UGD A;  2SGF I;  4SGB I;  2QQE A;  1M8C A;  1XA6 A;  1AN1 I;  2L8E A;  1M8B A;  2NU3 I;  4UXJ A;  2FNF X;  1Y1B A;  2KCX A;  3UGI A;  1MT1 A;  3OXL A;  2SGQ I;  3QTL D;  5HI7 A;  3QWP A;  1LR8 A;  1PPF I;  2SGP I;  2F3C I;  1OYV I;  1TIH A;  1IW4 A;  2QQC A;  1CHO I;  3CXL A;  1TOT A;  1Y1C A;  3SGQ I;  5CCL A;  2ENZ A;  1CT4 I;  1HDL A;  3E2I A;  2ORW A;  1CT0 I;  2SGE I;  5HQ8 A;  2GKR I;  1PJU A;  1H0Z A;  5FUV A;  1VDD A;  3UEY A;  2B0U C;  1LR7 A;  1Y8F A;  3VDP A;  1TUR A;  2N52 A;  2ENN A;  2UZ3 A;  2JW6 A;  3B4V C;  1OMU A;  1OVO A;  1CT2 I;  5EX3 A;  1IY6 A;  1CSO I;  3D00 A;  3RU0 A;  2B8T A;  2YQP A;  3OL0 A;  2WCY A;  3OXF A;  2KMP A;  2LEO A;  1XX6 A;  1CGJ I;  2KMQ A;  3BJI A;  1HPT A;  1SGD I;  2JXD A;  2XRC A;  3PDN A;  2DB6 A;  3OVO A;  4GI3 C;  1CE3 A;  1HJA I;  1R79 A;  4A24 A;  2QQ0 A;  1X4S A;  3VDU A;  4E1R A;  1UUC A;  1BUS A;  3E59 A;  5FUX A;  2V1C C;  5CCM A;  1UVF A;  2VRW B;  2W0T A;  1W3S A;  2GVI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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