3UGIA

Structural and functional characterization of an anesthetic binding site in the second cysteine-rich domain of protein kinase c delta
Total Genus 11
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
65
structure length
65
Chain Sequence
GSRRASVGSHRFKVYNYMSPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREKVANLCEFIVTD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structural and Functional Characterization of an Anesthetic Binding Site in the Second Cysteine-Rich Domain of Protein Kinase Cdelta
pubmed doi rcsb
molecule keywords Protein kinase C delta type
source organism Mus musculus
molecule tags Metal binding protein
total genus 11
structure length 65
sequence length 65
chains with identical sequence B
ec nomenclature ec 2.7.10.2: Non-specific protein-tyrosine kinase.
pdb deposition date 2011-11-02
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.20 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 3ugiA01
2FNFX 3CXLA 1XA6A 3KY9A 2GVIA 3BJIA 2ENZA 4L9MA 2JA1A 4FKDA 2YUUA 1TBNA 2ROWA 5FUWA 4B6DA 1R79A 1TBOA 2J87A 5FUYA 2ENNA 2WVJA 2QPOA 3UEJA 3E2IA 2ELIA 2ORVA 1W4RA 2B8TA 3UFFA 1PTRA 2QQ0A 5FUVA 1FARA 1KBEA 1RFHA 2DB6A 2UZ3A 2QQEA 4UXJA 3UEYA 1FAQA 4UXHA 1PTQA 1Y8FA 3UGDA 1KBFA 2J9RA 2VRWB 3UGIA 3UGLA 5FUXA 2ORWA 4UXIA 1XBTA 1XX6A 2E73A
chains in the Genus database with same CATH superfamily
3VDPA 1BUSA 2ERWA 3KY9A 5HQ8A 1WTJA 2P6AC 2KCXA 4L9MA 2UVOA 1MJ9A 2F3CI 2YUUA 4GI3C 2OU2A 1ULKA 2V1CC 3OXFA 4A24A 4B6DA 5E3QA 1HPTA 1PJUA 2N71A 4DNCA 5FUYA 2SGFI 1CGJI 2NU2I 4WP4A 3OVOA 2CWGA 3QWPA 2B8TA 3R5BA 1N13A 1HJAI 2YQPA 1CT2I 1S20A 1FARA 2RC4A 2WCYA 2DB6A 2DIPA 5CCMA 5JHWC 2LEOA 1TUSA 3TO7A 3TOBA 3QAHA 4UXHA 1TGSI 3TJQA 3FC3A 3GOXA 1M8CA 1OMUA 3UGIA 2NU4I 1Z2IA 1U5KA 2GKVA 2LB7A 2KMPA 2QQDA 3OXLA 4E1RA 1XBTA 2Y0MA 3FSXA 1WGTA 1Y1BA 1MT1A 1CT0I 1NXUA 1KMAA 3VDUA 2JA1A 4FKDA 2JXDA 1LR7A 1DS3I 1OMTA 1SGYI 2GKRI 1K7VA 2N17A 2SGQI 4JCVE 2LUYA 5J8CA 2JYYA 5E3RA 1TBOA 1CE3A 3R5AA 1NUBA 2ODDA 3R5CA 1UHAA 3TO6A 2ENNA 3UEJA 3HH2C 1Q9BA 2ELIA 1W4RA 3SGQI 1UVGA 1SGQI 2X52A 3UOEA 2X3TA 1CT4I 5E3PA 1FAQA 1Z7KB 1CSOI 2QQEA 1MJBA 4UXJA 2WGCA 2KMOA 2W0TA 2GIVA 3OXGA 1FY7A 1H0ZA 5FUXA 2CWHA 3SGBI 2JW6A 1DS2I 2ORWA 2ORVA 1P9ZA 2E73A 2M5XA 3RU0A 2PQ8A 1AN1I 3SEKC 1XA6A 4OVOA 1TIHA 2GVIA 2ENZA 1OYVI 1TURA 4UXIA 3VE5A 1CHOI 2ROWA 1YTPA 5FUWA 1BMOA 1R79A 1V1IA 1TOTA 7WGAA 3D00A 4SGBI 2L8EA 2NU1I 5J8FA 5EX3A 2NU0I 1V1HA 1SGPI 2QPOA 1ULMA 2L7XA 3E2IA 3R5DA 2RIJA 1HEVA 1PCEA 2SGDI 3UFFA 1PTRA 1R0RI 2ARPF 2QQCA 1ULNA 2UZ3A 2KMRA 1IY5A 1SGRI 2DKVA 1UVFA 1LR9A 1PTQA 1Y8FA 1KBFA 2J9RA 2SGEI 1Y1CA 2VRWB 3UGLA 4MPIA 4HGUA 4E1PA 2E5RA 3MEKA 1CGII 1WKXA 1XX6A 5EX0A 1K7UA 1YU6C 1FYBA 2FNFX 3CXLA 1SGDI 3BJIA 3QTLD 1IW4A 5HI7A 2A20A 2N1AB 1K7TA 1TBQR 2OD1A 1SGEI 2JZMA 1LR8A 2BUSA 2KMQA 3FSYA 2K9HA 3B4VC 1MJAA 2V1CA 3OL0A 2J87A 5DAEA 9WGAA 2XRCA 1P9GA 1X4SA 2WVJA 1X74A 3E59A 2NU3I 2N52A 1IY6A 1PPFI 2QQ0A 5FUVA 5CCLA 1M8BA 1KBEA 1RFHA 1TBRR 2OVOA 3UEYA 1SGNI 2GKTI 2OZUA 1HDLA 2CWFA 3UGDA 3TOAA 1WGCA 1W3SA 2V53A 3PDNA 2CJSC 1OVOA 2B0UC 2SGPI 1UUCA 3TO9A 4AMLA 1VDDA 1TBNA
chains in the Genus database with same CATH topology
3VDPA 1BUSA 2ERWA 3KY9A 5HQ8A 2P6AC 4L9MA 2KCXA 2F3CI 2YUUA 4GI3C 2V1CC 3OXFA 4A24A 4B6DA 1HPTA 1PJUA 2N71A 5FUYA 2SGFI 1CGJI 2NU2I 3OVOA 3QWPA 2B8TA 1N13A 1HJAI 2YQPA 1CT2I 1FARA 2WCYA 5CCMA 2DB6A 2DIPA 5JHWC 2LEOA 1TUSA 4UXHA 1TGSI 3TJQA 3FC3A 3GOXA 1M8CA 1OMUA 3UGIA 2NU4I 1U5KA 2GKVA 2KMPA 2QQDA 3OXLA 4E1RA 1XBTA 1Y1BA 1MT1A 1CT0I 1KMAA 3VDUA 2JA1A 4FKDA 2JXDA 1LR7A 1DS3I 1OMTA 1SGYI 2GKRI 2N17A 2SGQI 4JCVE 2LUYA 2JYYA 1TBOA 1CE3A 1NUBA 2ODDA 2ENNA 3UEJA 3HH2C 2ELIA 1W4RA 3SGQI 1UVGA 1SGQI 1CT4I 1FAQA 1Z7KB 1CSOI 2QQEA 4UXJA 2KMOA 2W0TA 3OXGA 1H0ZA 5FUXA 3SGBI 2JW6A 1DS2I 2ORWA 2ORVA 2E73A 2M5XA 3RU0A 3SEKC 1AN1I 1XA6A 4OVOA 1TIHA 2GVIA 2ENZA 1OYVI 1TURA 4UXIA 3VE5A 1CHOI 2ROWA 1YTPA 5FUWA 1BMOA 1R79A 1V1IA 1TOTA 3D00A 4SGBI 2L8EA 2NU1I 5EX3A 2NU0I 1V1HA 1SGPI 2QPOA 3E2IA 2L7XA 1PCEA 2SGDI 3UFFA 1PTRA 2ARPF 1R0RI 2QQCA 2UZ3A 1IY5A 2KMRA 1SGRI 1UVFA 1LR9A 1PTQA 1Y8FA 1KBFA 2J9RA 2SGEI 1Y1CA 2VRWB 3UGLA 4HGUA 4E1PA 2E5RA 3MEKA 1CGII 5EX0A 1XX6A 1YU6C 1FYBA 2FNFX 3CXLA 1SGDI 3BJIA 3QTLD 1IW4A 5HI7A 2A20A 2N1AB 2OD1A 1TBQR 1SGEI 2JZMA 1LR8A 2BUSA 2KMQA 2K9HA 3B4VC 2V1CA 3OL0A 2J87A 5DAEA 2XRCA 1X4SA 2WVJA 1X74A 3E59A 2NU3I 2N52A 1IY6A 1PPFI 2QQ0A 5FUVA 5CCLA 1M8BA 1KBEA 1RFHA 1TBRR 2OVOA 3UEYA 1SGNI 2GKTI 1HDLA 3UGDA 1W3SA 2V53A 3PDNA 2CJSC 1OVOA 2B0UC 2SGPI 1UUCA 1VDDA 1TBNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FNF X;  3CXL A;  1XA6 A;  3KY9 A;  2GVI A;  3BJI A;  2ENZ A;  4L9M A;  2JA1 A;  4FKD A;  2YUU A;  1TBN A;  2ROW A;  5FUW A;  4B6D A;  1R79 A;  1TBO A;  2J87 A;  5FUY A;  2ENN A;  2WVJ A;  2QPO A;  3UEJ A;  3E2I A;  2ELI A;  2ORV A;  1W4R A;  2B8T A;  3UFF A;  1PTR A;  2QQ0 A;  5FUV A;  1FAR A;  1KBE A;  1RFH A;  2DB6 A;  2UZ3 A;  2QQE A;  4UXJ A;  3UEY A;  1FAQ A;  4UXH A;  1PTQ A;  1Y8F A;  3UGD A;  1KBF A;  2J9R A;  2VRW B;  3UGI A;  3UGL A;  5FUX A;  2ORW A;  4UXI A;  1XBT A;  1XX6 A;  2E73 A; 
#chains in the Genus database with same CATH topology
 3VDP A;  1BUS A;  2ERW A;  3KY9 A;  5HQ8 A;  1WTJ A;  2P6A C;  2KCX A;  4L9M A;  2UVO A;  1MJ9 A;  2F3C I;  2YUU A;  4GI3 C;  2OU2 A;  1ULK A;  2V1C C;  3OXF A;  4A24 A;  4B6D A;  5E3Q A;  1HPT A;  1PJU A;  2N71 A;  4DNC A;  5FUY A;  2SGF I;  1CGJ I;  2NU2 I;  4WP4 A;  3OVO A;  2CWG A;  3QWP A;  2B8T A;  3R5B A;  1N13 A;  1HJA I;  2YQP A;  1CT2 I;  1S20 A;  1FAR A;  2RC4 A;  2WCY A;  2DB6 A;  2DIP A;  5CCM A;  5JHW C;  2LEO A;  1TUS A;  3TO7 A;  3TOB A;  3QAH A;  4UXH A;  1TGS I;  3TJQ A;  3FC3 A;  3GOX A;  1M8C A;  1OMU A;  3UGI A;  2NU4 I;  1Z2I A;  1U5K A;  2GKV A;  2LB7 A;  2KMP A;  2QQD A;  3OXL A;  4E1R A;  1XBT A;  2Y0M A;  3FSX A;  1WGT A;  1Y1B A;  1MT1 A;  1CT0 I;  1NXU A;  1KMA A;  3VDU A;  2JA1 A;  4FKD A;  2JXD A;  1LR7 A;  1DS3 I;  1OMT A;  1SGY I;  2GKR I;  1K7V A;  2N17 A;  2SGQ I;  4JCV E;  2LUY A;  5J8C A;  2JYY A;  5E3R A;  1TBO A;  1CE3 A;  3R5A A;  1NUB A;  2ODD A;  3R5C A;  1UHA A;  3TO6 A;  2ENN A;  3UEJ A;  3HH2 C;  1Q9B A;  2ELI A;  1W4R A;  3SGQ I;  1UVG A;  1SGQ I;  2X52 A;  3UOE A;  2X3T A;  1CT4 I;  5E3P A;  1FAQ A;  1Z7K B;  1CSO I;  2QQE A;  1MJB A;  4UXJ A;  2WGC A;  2KMO A;  2W0T A;  2GIV A;  3OXG A;  1FY7 A;  1H0Z A;  5FUX A;  2CWH A;  3SGB I;  2JW6 A;  1DS2 I;  2ORW A;  2ORV A;  1P9Z A;  2E73 A;  2M5X A;  3RU0 A;  2PQ8 A;  1AN1 I;  3SEK C;  1XA6 A;  4OVO A;  1TIH A;  2GVI A;  2ENZ A;  1OYV I;  1TUR A;  4UXI A;  3VE5 A;  1CHO I;  2ROW A;  1YTP A;  5FUW A;  1BMO A;  1R79 A;  1V1I A;  1TOT A;  7WGA A;  3D00 A;  4SGB I;  2L8E A;  2NU1 I;  5J8F A;  5EX3 A;  2NU0 I;  1V1H A;  1SGP I;  2QPO A;  1ULM A;  2L7X A;  3E2I A;  3R5D A;  2RIJ A;  1HEV A;  1PCE A;  2SGD I;  3UFF A;  1PTR A;  1R0R I;  2ARP F;  2QQC A;  1ULN A;  2UZ3 A;  2KMR A;  1IY5 A;  1SGR I;  2DKV A;  1UVF A;  1LR9 A;  1PTQ A;  1Y8F A;  1KBF A;  2J9R A;  2SGE I;  1Y1C A;  2VRW B;  3UGL A;  4MPI A;  4HGU A;  4E1P A;  2E5R A;  3MEK A;  1CGI I;  1WKX A;  1XX6 A;  5EX0 A;  1K7U A;  1YU6 C;  1FYB A;  2FNF X;  3CXL A;  1SGD I;  3BJI A;  3QTL D;  1IW4 A;  5HI7 A;  2A20 A;  2N1A B;  1K7T A;  1TBQ R;  2OD1 A;  1SGE I;  2JZM A;  1LR8 A;  2BUS A;  2KMQ A;  3FSY A;  2K9H A;  3B4V C;  1MJA A;  2V1C A;  3OL0 A;  2J87 A;  5DAE A;  9WGA A;  2XRC A;  1P9G A;  1X4S A;  2WVJ A;  1X74 A;  3E59 A;  2NU3 I;  2N52 A;  1IY6 A;  1PPF I;  2QQ0 A;  5FUV A;  5CCL A;  1M8B A;  1KBE A;  1RFH A;  1TBR R;  2OVO A;  3UEY A;  1SGN I;  2GKT I;  2OZU A;  1HDL A;  2CWF A;  3UGD A;  3TOA A;  1WGC A;  1W3S A;  2V53 A;  3PDN A;  2CJS C;  1OVO A;  2B0U C;  2SGP I;  1UUC A;  3TO9 A;  4AML A;  1VDD A;  1TBN A; 
#chains in the Genus database with same CATH homology
 3VDP A;  1BUS A;  2ERW A;  3KY9 A;  5HQ8 A;  2P6A C;  4L9M A;  2KCX A;  2F3C I;  2YUU A;  4GI3 C;  2V1C C;  3OXF A;  4A24 A;  4B6D A;  1HPT A;  1PJU A;  2N71 A;  5FUY A;  2SGF I;  1CGJ I;  2NU2 I;  3OVO A;  3QWP A;  2B8T A;  1N13 A;  1HJA I;  2YQP A;  1CT2 I;  1FAR A;  2WCY A;  5CCM A;  2DB6 A;  2DIP A;  5JHW C;  2LEO A;  1TUS A;  4UXH A;  1TGS I;  3TJQ A;  3FC3 A;  3GOX A;  1M8C A;  1OMU A;  3UGI A;  2NU4 I;  1U5K A;  2GKV A;  2KMP A;  2QQD A;  3OXL A;  4E1R A;  1XBT A;  1Y1B A;  1MT1 A;  1CT0 I;  1KMA A;  3VDU A;  2JA1 A;  4FKD A;  2JXD A;  1LR7 A;  1DS3 I;  1OMT A;  1SGY I;  2GKR I;  2N17 A;  2SGQ I;  4JCV E;  2LUY A;  2JYY A;  1TBO A;  1CE3 A;  1NUB A;  2ODD A;  2ENN A;  3UEJ A;  3HH2 C;  2ELI A;  1W4R A;  3SGQ I;  1UVG A;  1SGQ I;  1CT4 I;  1FAQ A;  1Z7K B;  1CSO I;  2QQE A;  4UXJ A;  2KMO A;  2W0T A;  3OXG A;  1H0Z A;  5FUX A;  3SGB I;  2JW6 A;  1DS2 I;  2ORW A;  2ORV A;  2E73 A;  2M5X A;  3RU0 A;  3SEK C;  1AN1 I;  1XA6 A;  4OVO A;  1TIH A;  2GVI A;  2ENZ A;  1OYV I;  1TUR A;  4UXI A;  3VE5 A;  1CHO I;  2ROW A;  1YTP A;  5FUW A;  1BMO A;  1R79 A;  1V1I A;  1TOT A;  3D00 A;  4SGB I;  2L8E A;  2NU1 I;  5EX3 A;  2NU0 I;  1V1H A;  1SGP I;  2QPO A;  3E2I A;  2L7X A;  1PCE A;  2SGD I;  3UFF A;  1PTR A;  2ARP F;  1R0R I;  2QQC A;  2UZ3 A;  1IY5 A;  2KMR A;  1SGR I;  1UVF A;  1LR9 A;  1PTQ A;  1Y8F A;  1KBF A;  2J9R A;  2SGE I;  1Y1C A;  2VRW B;  3UGL A;  4HGU A;  4E1P A;  2E5R A;  3MEK A;  1CGI I;  5EX0 A;  1XX6 A;  1YU6 C;  1FYB A;  2FNF X;  3CXL A;  1SGD I;  3BJI A;  3QTL D;  1IW4 A;  5HI7 A;  2A20 A;  2N1A B;  2OD1 A;  1TBQ R;  1SGE I;  2JZM A;  1LR8 A;  2BUS A;  2KMQ A;  2K9H A;  3B4V C;  2V1C A;  3OL0 A;  2J87 A;  5DAE A;  2XRC A;  1X4S A;  2WVJ A;  1X74 A;  3E59 A;  2NU3 I;  2N52 A;  1IY6 A;  1PPF I;  2QQ0 A;  5FUV A;  5CCL A;  1M8B A;  1KBE A;  1RFH A;  1TBR R;  2OVO A;  3UEY A;  1SGN I;  2GKT I;  1HDL A;  3UGD A;  1W3S A;  2V53 A;  3PDN A;  2CJS C;  1OVO A;  2B0U C;  2SGP I;  1UUC A;  1VDD A;  1TBN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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