1DS2 | Genus

Total Genus 13

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	13
sequence length	51
structure length	50
Chain Sequence	VDCSEYPKPACTEYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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Time for openFile(/file/5cfaf8e457ac4d0c134169d6/pdb.gz): 3505 ms

reading 50 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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50 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase/hydrolase inhibitor
source organism	Meleagris gallopavo
publication title	Contribution of peptide bonds to inhibitor-protease binding: crystal structures of the turkey ovomucoid third domain backbone variants OMTKY3-Pro18I and OMTKY3-psi[COO]-Leu18I in complex with Streptomyces griseus proteinase B (SGPB) and the structure of the free inhibitor, OMTKY-3-psi[CH2NH2+]-Asp19I pubmed doi rcsb
molecule keywords	PROTEINASE B (SGPB)
total genus	13
structure length	50
sequence length	51
ec nomenclature
pdb deposition date	2000-01-06

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
I	PF00050	Kazal_1	Kazal-type serine protease inhibitor domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.60.30	Alpha Beta	2-Layer Sandwich	Wheat Germ Agglutinin (Isolectin 2); domain 1	Wheat Germ Agglutinin (Isolectin 2); domain 1	1ds2I00

3QTLD 1DS2I 2KMRA 1TGSI 1YU6C 2JYYA 1CSOI 1CGII 2NU4I 1CE3A 2B0UC 2F3CI 2KMOA 2N17A 1LR7A 3OVOA 1FYBA 1CHOI 2ERWA 2V53A 2QQDA 5JHWC 1PCEA 1CT0I 2M5XA 1BMOA 1YTPA 1KMAA 2SGQI 1H0ZA 2N71A 1CGJI 2GKTI 2OVOA 3SGQI 2QQCA 4SGBI 2N52A 1IY5A 1HDLA 1AN1I 2NU2I 2ARPF 1N13A 1SGDI 2LEOA 1HJAI 2XRCA 2NU0I 1PJUA 2JXDA 1DS3I 1OMUA 5DAEA 1TUSA 1CT2I 2BUSA 2NU3I 1TBRR 1R0RI 1UVGA 1SGPI 2SGPI 1HPTA 2SGDI 2SGFI 4OVOA 1LR8A 2GKVA 1TBQR 1UUCA 2SGEI 1M8CA 1SGEI 3TJQA 3SGBI 2GKRI 4GI3C 1SGRI 2P6AC 2WCYA 1IY6A 3B4VC 1OMTA 3HH2C 1CT4I 2KMQA 1OVOA 1LR9A 3SEKC 1OYVI 1IW4A 1UVFA 1BUSA 1Z7KB 2KCXA 1SGYI 1MT1A 4HGUA 2JZMA 1M8BA 1Y1BA 2KMPA 1PPFI 1NUBA 2NU1I 1Y1CA 1SGNI 1TURA 1TIHA 1SGQI
chains in the Genus database with same CATH superfamily

2CJSC 2ORWA 3OL0A 2FNFX 3QTLD 3TO7A 5J8CA 1DS2I 2ENNA 1U5KA 2ODDA 2KMRA 1PTQA 1TGSI 3R5CA 1TOTA 3BJIA 4UXIA 1MJ9A 1WGCA 2YQPA 1YU6C 2JA1A 2JYYA 3MEKA 3QAHA 1Q9BA 1S20A 1CSOI 1CE3A 4MPIA 3UGIA 1CGII 1W3SA 2NU4I 1NXUA 2B0UC 2F3CI 1W4RA 2KMOA 2L7XA 2N17A 1LR7A 3OVOA 3OXLA 1CHOI 1VDDA 2ERWA 2LUYA 2X52A 1FY7A 2V53A 2QQDA 3E59A 5HQ8A 5JHWC 1PCEA 3PDNA 2CWFA 1X74A 1CT0I 2RIJA 1BMOA 2M5XA 1YTPA 3UOEA 7WGAA 1KMAA 3QWPA 2SGQI 5HI7A 1H0ZA 3R5DA 2WVJA 2N71A 1CGJI 2GKTI 2JW6A 2X3TA 1FAQA 2K9HA 2QPOA 2YUUA 2OVOA 3SGQI 2QQCA 3TO6A 2PQ8A 4SGBI 3CXLA 2N52A 4AMLA 5EX0A 1IY5A 4E1PA 1HDLA 3UEYA 9WGAA 1AN1I 2ROWA 4WP4A 3UGDA 3RU0A 1MJAA 2J9RA 1K7UA 3E2IA 5FUVA 1TBNA 2GVIA 2NU2I 5FUXA 1RFHA 1Z2IA 2ARPF 1N13A 1SGDI 2LEOA 4B6DA 3OXFA 2GIVA 1HJAI 2XRCA 2NU0I 1FARA 1PJUA 2JXDA 2V1CC 1DS3I 1OMUA 5DAEA 2UZ3A 3R5BA 1TUSA 2ORVA 1V1HA 3D00A 1CT2I 2BUSA 3UGLA 2NU3I 1TBRR 1R0RI 1UVGA 2DIPA 1SGPI 2SGPI 2CWHA 1HPTA 1P9GA 2SGDI 3VE5A 2E73A 5E3RA 1KBEA 4A24A 2SGFI 2OZUA 3OXGA 1XX6A 2ELIA 4L9MA 4OVOA 1LR8A 2GKVA 3FC3A 1K7TA 1TBQR 1V1IA 1UUCA 2SGEI 1K7VA 1HEVA 5CCLA 3FSXA 1P9ZA 5J8FA 3UFFA 1UHAA 1M8CA 1MJBA 4UXJA 1SGEI 1ULMA 2LB7A 3TJQA 4DNCA 3SGBI 1WKXA 1WTJA 1WGTA 1SGRI 2GKRI 2P6AC 4GI3C 2WCYA 5E3PA 1FYBA 3KY9A 4E1RA 1IY6A 2QQEA 2W0TA 2L8EA 3B4VC 5CCMA 4JCVE 3TOAA 2V1CA 3TO9A 2VRWB 4UXHA 1OMTA 5E3QA 1TBOA 2J87A 3HH2C 1CT4I 2OD1A 2KMQA 5EX3A 1OVOA 1LR9A 2N1AB 1ULKA 3SEKC 1OYVI 2QQ0A 1IW4A 1XA6A 3R5AA 1PTRA 1ULNA 3FSYA 1UVFA 2DB6A 2Y0MA 1BUSA 1R79A 5FUYA 3VDPA 3VDUA 1Z7KB 5FUWA 2KCXA 1Y8FA 1XBTA 1SGYI 1MT1A 4HGUA 1KBFA 2JZMA 3UEJA 3TOBA 1X4SA 2E5RA 2RC4A 1M8BA 2A20A 2WGCA 1Y1BA 2KMPA 2ENZA 3GOXA 1PPFI 2CWGA 4FKDA 1NUBA 2NU1I 2OU2A 2B8TA 1Y1CA 2UVOA 1SGNI 1TURA 1TIHA 1SGQI 2DKVA
chains in the Genus database with same CATH topology

2CJSC 2ORWA 3OL0A 2FNFX 3QTLD 1DS2I 2ENNA 1U5KA 2ODDA 2KMRA 1PTQA 1TGSI 1TOTA 3BJIA 4UXIA 2YQPA 1YU6C 2JA1A 2JYYA 3MEKA 1CE3A 1CSOI 3UGIA 1CGII 1W3SA 2NU4I 2B0UC 2L7XA 2F3CI 1W4RA 2KMOA 2N17A 3OXLA 1LR7A 3OVOA 1FYBA 1CHOI 1VDDA 2ERWA 2LUYA 3E59A 2V53A 2QQDA 5HQ8A 5JHWC 1PCEA 3PDNA 1X74A 1CT0I 1BMOA 2M5XA 1YTPA 1KMAA 3QWPA 2SGQI 5HI7A 1H0ZA 2WVJA 2N71A 1CGJI 2GKTI 2JW6A 1FAQA 2K9HA 2QPOA 2YUUA 2OVOA 3SGQI 2QQCA 4SGBI 3CXLA 2N52A 1IY5A 5EX0A 1HDLA 4E1PA 3UEYA 1AN1I 2ROWA 3UGDA 3RU0A 2J9RA 3E2IA 5FUVA 1TBNA 2GVIA 2NU2I 5FUXA 1RFHA 2ARPF 1N13A 1SGDI 2LEOA 4B6DA 3OXFA 1HJAI 2XRCA 2NU0I 1FARA 1PJUA 2JXDA 2V1CC 1DS3I 1OMUA 5DAEA 2UZ3A 1TUSA 2ORVA 1V1HA 3D00A 1CT2I 2BUSA 3UGLA 2NU3I 1TBRR 1R0RI 1UVGA 2DIPA 1SGPI 2SGPI 1HPTA 2SGDI 3VE5A 2E73A 4A24A 1KBEA 2SGFI 3OXGA 1XX6A 2ELIA 4L9MA 4OVOA 1LR8A 2GKVA 3FC3A 1TBQR 1V1IA 1UUCA 2SGEI 5CCLA 3UFFA 1M8CA 4UXJA 1SGEI 3TJQA 3SGBI 2GKRI 4GI3C 1SGRI 2P6AC 2WCYA 3KY9A 4E1RA 1IY6A 2QQEA 2W0TA 2L8EA 3B4VC 5CCMA 4JCVE 2V1CA 2VRWB 4UXHA 1OMTA 1TBOA 2J87A 3HH2C 1CT4I 2OD1A 2KMQA 5EX3A 1OVOA 1LR9A 2N1AB 3SEKC 1OYVI 2QQ0A 1IW4A 1XA6A 1PTRA 1UVFA 2DB6A 1BUSA 1R79A 5FUYA 3VDPA 3VDUA 1Z7KB 5FUWA 2KCXA 1Y8FA 1XBTA 1SGYI 1MT1A 4HGUA 1KBFA 2JZMA 3UEJA 1X4SA 2E5RA 1M8BA 2A20A 3GOXA 1Y1BA 2KMPA 2ENZA 1PPFI 4FKDA 1NUBA 2NU1I 2B8TA 1Y1CA 1SGNI 1TURA 1TIHA 1SGQI
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3QTL D;  1DS2 I;  2KMR A;  1TGS I;  1YU6 C;  2JYY A;  1CSO I;  1CGI I;  2NU4 I;  1CE3 A;  2B0U C;  2F3C I;  2KMO A;  2N17 A;  1LR7 A;  3OVO A;  1FYB A;  1CHO I;  2ERW A;  2V53 A;  2QQD A;  5JHW C;  1PCE A;  1CT0 I;  2M5X A;  1BMO A;  1YTP A;  1KMA A;  2SGQ I;  1H0Z A;  2N71 A;  1CGJ I;  2GKT I;  2OVO A;  3SGQ I;  2QQC A;  4SGB I;  2N52 A;  1IY5 A;  1HDL A;  1AN1 I;  2NU2 I;  2ARP F;  1N13 A;  1SGD I;  2LEO A;  1HJA I;  2XRC A;  2NU0 I;  1PJU A;  2JXD A;  1DS3 I;  1OMU A;  5DAE A;  1TUS A;  1CT2 I;  2BUS A;  2NU3 I;  1TBR R;  1R0R I;  1UVG A;  1SGP I;  2SGP I;  1HPT A;  2SGD I;  2SGF I;  4OVO A;  1LR8 A;  2GKV A;  1TBQ R;  1UUC A;  2SGE I;  1M8C A;  1SGE I;  3TJQ A;  3SGB I;  2GKR I;  4GI3 C;  1SGR I;  2P6A C;  2WCY A;  1IY6 A;  3B4V C;  1OMT A;  3HH2 C;  1CT4 I;  2KMQ A;  1OVO A;  1LR9 A;  3SEK C;  1OYV I;  1IW4 A;  1UVF A;  1BUS A;  1Z7K B;  2KCX A;  1SGY I;  1MT1 A;  4HGU A;  2JZM A;  1M8B A;  1Y1B A;  2KMP A;  1PPF I;  1NUB A;  2NU1 I;  1Y1C A;  1SGN I;  1TUR A;  1TIH A;  1SGQ I; 
#chains in the Genus database with same CATH topology
 2CJS C;  2ORW A;  3OL0 A;  2FNF X;  3QTL D;  3TO7 A;  5J8C A;  1DS2 I;  2ENN A;  1U5K A;  2ODD A;  2KMR A;  1PTQ A;  1TGS I;  3R5C A;  1TOT A;  3BJI A;  4UXI A;  1MJ9 A;  1WGC A;  2YQP A;  1YU6 C;  2JA1 A;  2JYY A;  3MEK A;  3QAH A;  1Q9B A;  1S20 A;  1CSO I;  1CE3 A;  4MPI A;  3UGI A;  1CGI I;  1W3S A;  2NU4 I;  1NXU A;  2B0U C;  2F3C I;  1W4R A;  2KMO A;  2L7X A;  2N17 A;  1LR7 A;  3OVO A;  3OXL A;  1CHO I;  1VDD A;  2ERW A;  2LUY A;  2X52 A;  1FY7 A;  2V53 A;  2QQD A;  3E59 A;  5HQ8 A;  5JHW C;  1PCE A;  3PDN A;  2CWF A;  1X74 A;  1CT0 I;  2RIJ A;  1BMO A;  2M5X A;  1YTP A;  3UOE A;  7WGA A;  1KMA A;  3QWP A;  2SGQ I;  5HI7 A;  1H0Z A;  3R5D A;  2WVJ A;  2N71 A;  1CGJ I;  2GKT I;  2JW6 A;  2X3T A;  1FAQ A;  2K9H A;  2QPO A;  2YUU A;  2OVO A;  3SGQ I;  2QQC A;  3TO6 A;  2PQ8 A;  4SGB I;  3CXL A;  2N52 A;  4AML A;  5EX0 A;  1IY5 A;  4E1P A;  1HDL A;  3UEY A;  9WGA A;  1AN1 I;  2ROW A;  4WP4 A;  3UGD A;  3RU0 A;  1MJA A;  2J9R A;  1K7U A;  3E2I A;  5FUV A;  1TBN A;  2GVI A;  2NU2 I;  5FUX A;  1RFH A;  1Z2I A;  2ARP F;  1N13 A;  1SGD I;  2LEO A;  4B6D A;  3OXF A;  2GIV A;  1HJA I;  2XRC A;  2NU0 I;  1FAR A;  1PJU A;  2JXD A;  2V1C C;  1DS3 I;  1OMU A;  5DAE A;  2UZ3 A;  3R5B A;  1TUS A;  2ORV A;  1V1H A;  3D00 A;  1CT2 I;  2BUS A;  3UGL A;  2NU3 I;  1TBR R;  1R0R I;  1UVG A;  2DIP A;  1SGP I;  2SGP I;  2CWH A;  1HPT A;  1P9G A;  2SGD I;  3VE5 A;  2E73 A;  5E3R A;  1KBE A;  4A24 A;  2SGF I;  2OZU A;  3OXG A;  1XX6 A;  2ELI A;  4L9M A;  4OVO A;  1LR8 A;  2GKV A;  3FC3 A;  1K7T A;  1TBQ R;  1V1I A;  1UUC A;  2SGE I;  1K7V A;  1HEV A;  5CCL A;  3FSX A;  1P9Z A;  5J8F A;  3UFF A;  1UHA A;  1M8C A;  1MJB A;  4UXJ A;  1SGE I;  1ULM A;  2LB7 A;  3TJQ A;  4DNC A;  3SGB I;  1WKX A;  1WTJ A;  1WGT A;  1SGR I;  2GKR I;  2P6A C;  4GI3 C;  2WCY A;  5E3P A;  1FYB A;  3KY9 A;  4E1R A;  1IY6 A;  2QQE A;  2W0T A;  2L8E A;  3B4V C;  5CCM A;  4JCV E;  3TOA A;  2V1C A;  3TO9 A;  2VRW B;  4UXH A;  1OMT A;  5E3Q A;  1TBO A;  2J87 A;  3HH2 C;  1CT4 I;  2OD1 A;  2KMQ A;  5EX3 A;  1OVO A;  1LR9 A;  2N1A B;  1ULK A;  3SEK C;  1OYV I;  2QQ0 A;  1IW4 A;  1XA6 A;  3R5A A;  1PTR A;  1ULN A;  3FSY A;  1UVF A;  2DB6 A;  2Y0M A;  1BUS A;  1R79 A;  5FUY A;  3VDP A;  3VDU A;  1Z7K B;  5FUW A;  2KCX A;  1Y8F A;  1XBT A;  1SGY I;  1MT1 A;  4HGU A;  1KBF A;  2JZM A;  3UEJ A;  3TOB A;  1X4S A;  2E5R A;  2RC4 A;  1M8B A;  2A20 A;  2WGC A;  1Y1B A;  2KMP A;  2ENZ A;  3GOX A;  1PPF I;  2CWG A;  4FKD A;  1NUB A;  2NU1 I;  2OU2 A;  2B8T A;  1Y1C A;  2UVO A;  1SGN I;  1TUR A;  1TIH A;  1SGQ I;  2DKV A; 
#chains in the Genus database with same CATH homology
 2CJS C;  2ORW A;  3OL0 A;  2FNF X;  3QTL D;  1DS2 I;  2ENN A;  1U5K A;  2ODD A;  2KMR A;  1PTQ A;  1TGS I;  1TOT A;  3BJI A;  4UXI A;  2YQP A;  1YU6 C;  2JA1 A;  2JYY A;  3MEK A;  1CE3 A;  1CSO I;  3UGI A;  1CGI I;  1W3S A;  2NU4 I;  2B0U C;  2L7X A;  2F3C I;  1W4R A;  2KMO A;  2N17 A;  3OXL A;  1LR7 A;  3OVO A;  1FYB A;  1CHO I;  1VDD A;  2ERW A;  2LUY A;  3E59 A;  2V53 A;  2QQD A;  5HQ8 A;  5JHW C;  1PCE A;  3PDN A;  1X74 A;  1CT0 I;  1BMO A;  2M5X A;  1YTP A;  1KMA A;  3QWP A;  2SGQ I;  5HI7 A;  1H0Z A;  2WVJ A;  2N71 A;  1CGJ I;  2GKT I;  2JW6 A;  1FAQ A;  2K9H A;  2QPO A;  2YUU A;  2OVO A;  3SGQ I;  2QQC A;  4SGB I;  3CXL A;  2N52 A;  1IY5 A;  5EX0 A;  1HDL A;  4E1P A;  3UEY A;  1AN1 I;  2ROW A;  3UGD A;  3RU0 A;  2J9R A;  3E2I A;  5FUV A;  1TBN A;  2GVI A;  2NU2 I;  5FUX A;  1RFH A;  2ARP F;  1N13 A;  1SGD I;  2LEO A;  4B6D A;  3OXF A;  1HJA I;  2XRC A;  2NU0 I;  1FAR A;  1PJU A;  2JXD A;  2V1C C;  1DS3 I;  1OMU A;  5DAE A;  2UZ3 A;  1TUS A;  2ORV A;  1V1H A;  3D00 A;  1CT2 I;  2BUS A;  3UGL A;  2NU3 I;  1TBR R;  1R0R I;  1UVG A;  2DIP A;  1SGP I;  2SGP I;  1HPT A;  2SGD I;  3VE5 A;  2E73 A;  4A24 A;  1KBE A;  2SGF I;  3OXG A;  1XX6 A;  2ELI A;  4L9M A;  4OVO A;  1LR8 A;  2GKV A;  3FC3 A;  1TBQ R;  1V1I A;  1UUC A;  2SGE I;  5CCL A;  3UFF A;  1M8C A;  4UXJ A;  1SGE I;  3TJQ A;  3SGB I;  2GKR I;  4GI3 C;  1SGR I;  2P6A C;  2WCY A;  3KY9 A;  4E1R A;  1IY6 A;  2QQE A;  2W0T A;  2L8E A;  3B4V C;  5CCM A;  4JCV E;  2V1C A;  2VRW B;  4UXH A;  1OMT A;  1TBO A;  2J87 A;  3HH2 C;  1CT4 I;  2OD1 A;  2KMQ A;  5EX3 A;  1OVO A;  1LR9 A;  2N1A B;  3SEK C;  1OYV I;  2QQ0 A;  1IW4 A;  1XA6 A;  1PTR A;  1UVF A;  2DB6 A;  1BUS A;  1R79 A;  5FUY A;  3VDP A;  3VDU A;  1Z7K B;  5FUW A;  2KCX A;  1Y8F A;  1XBT A;  1SGY I;  1MT1 A;  4HGU A;  1KBF A;  2JZM A;  3UEJ A;  1X4S A;  2E5R A;  1M8B A;  2A20 A;  3GOX A;  1Y1B A;  2KMP A;  2ENZ A;  1PPF I;  4FKD A;  1NUB A;  2NU1 I;  2B8T A;  1Y1C A;  1SGN I;  1TUR A;  1TIH A;  1SGQ I;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1DS2I

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations