The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
38
|
sequence length |
82
|
structure length |
82
|
Chain Sequence |
QCTGGADCTSCTGACTGCGNCPNAVTCTNSQHCVKANTCTGSTDCNTAQTCTNSKDCFEANTCTDSTNCYKATACTNSSGCP
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Mimicry of ice structure by surface hydroxyls and water of a beta-helix antifreeze protein.
pubmed doi rcsb |
| molecule tags |
Antifreeze protein
|
| source organism |
Tenebrio molitor
|
| molecule keywords |
THERMAL HYSTERESIS PROTEIN ISOFORM YL-1
|
| total genus |
38
|
| structure length |
82
|
| sequence length |
82
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2000-05-10 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF02420 | AFP | Insect antifreeze protein repeat |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | 3 Solenoid | Pectate Lyase C-like | Insect antifreeze protein |
#chains in the Genus database with same CATH superfamily 1L1I A; 1EZG A; #chains in the Genus database with same CATH topology 2VBE A; 2NZM A; 2XC1 A; 1NHC A; 3N90 A; 5AMV A; 2BSP A; 3VSV A; 3TH0 A; 4XOT A; 3P4G A; 4YFO A; 1OOC A; 1K8F A; 1TYW A; 2X6Y A; 4Z05 A; 1WMR A; 1KCC A; 2O1D A; 1O8G A; 1O8K A; 3EQO A; 3N6Z A; 1OFE A; 2O0W A; 4YC5 A; 2PYH A; 2BM6 A; 3KRG A; 4OJL A; 2NST A; 2X6X A; 3VMW A; 2NTQ A; 1TYV A; 2VFQ A; 3BH7 B; 4NK8 A; 1K5C A; 1O8F A; 1PLU A; 2QXZ A; 2J8K A; 1JRG A; 1EZG A; 2W7Z A; 2X3H A; 1O88 A; 2VFM A; 1IB4 A; 4C2L A; 5C1C A; 1KTW A; 3GQ8 A; 1TSP A; 1QCX A; 2IOU G; 3SY2 A; 1GQ8 A; 1TYX A; 2O04 A; 2O6W A; 4OJO A; 2QYU A; 3LYC A; 4OZZ A; 1QJV A; 3B4N A; 4XKV A; 2NTP A; 3SUC A; 4KH3 A; 1KCD A; 2IQ7 A; 1IA5 A; 3ZSC A; 4W8T A; 3VSU A; 1WXR A; 3PET A; 1CZF A; 3GRH A; 4W8S A; 2YUH A; 3GQ9 A; 2NSP A; 3PSS A; 2VBM A; 4XON A; 1RU4 A; 4YZQ A; 1IDJ A; 3VMV A; 4YEL A; 1EA0 A; 1O8E A; 1PE9 A; 2EWE A; 2XTY A; 2Z8G A; 3B90 A; 3JUR A; 3ZPP A; 4MXN A; 4U4B A; 4XNF A; 4XOR A; 2VFP A; 1OGO X; 3GQA A; 3FY3 A; 4XN0 A; 2O17 A; 1QA1 A; 3RIQ A; 1K4Z A; 1O8J A; 4OJ5 A; 4XM3 A; 3BH6 B; 2BM4 A; 4OZY A; 3WWG A; 4YEI A; 4YZA A; 1BN8 A; 1TYU A; 2QZA A; 4XOP A; 2UVF A; 2B0R A; 3NB2 A; 4OPW A; 2VFN A; 5C1E A; 4W8R A; 4I84 A; 3LJY A; 3DU1 X; 1HF2 A; 2INU A; 4XLF A; 4EW9 A; 1KQ5 A; 1QRB A; 1QA3 A; 3AK5 A; 2XTW A; 1BHE A; 2J8I A; 2BM7 A; 4XLA A; 3UW0 A; 4Z06 A; 2PEC A; 1LM1 A; 1RMG A; 4OJP A; 3GQ7 A; 3EQN A; 4PMH A; 4URR A; 3H09 A; 1JTA A; 3B8Y A; 4YCQ A; 2QX3 A; 4U49 A; 4W8Q A; 1QRC A; 2INV A; 1DAB A; 4XR6 A; 1LLZ A; 1IDK A; 3JX8 A; 2VBK A; 1O8L A; 4JRA C; 1EE6 A; 2VFO A; 3T9G A; 1HG8 A; 1VBL A; 4OM9 A; 1AIR A; 2O0V A; 4V02 C; 2XT2 A; 2QY1 A; 1QA2 A; 1H80 A; 3VST A; 5JLV C; 2UVE A; 1DBG A; 4XMY A; 4XQF A; 1O8H A; 3LMW A; 5JMC B; 4MR0 A; 2ODL A; 2G0Y A; 3SYJ A; 3PSZ A; 1L1I A; 2XTX A; 2PYG A; 4XL9 A; 4XLC A; 1PXZ A; 4AVZ A; 2X6W A; 5DNS A; 1O8D A; 4XN3 A; 1X0C A; 2X85 A; 3ML3 A; 4YZ0 A; 2NTB A; 2BM5 A; 3NAW A; 4XLH A; 1OFL A; 4HWV A; 3SQV A; 2VJI A; 1OFD A; 2BX6 A; 4YEJ A; 1OGM X; 4Z03 A; 2NT6 A; 1OFM A; 1LLW A; 4YDT A; 4XLE A; 1RWR A; 4XKW A; 2XT4 A; 1XG2 A; 1DBO A; 1O8I A; 2F3L A; 2NT9 A; 4NK6 A; 2VJJ A; 4OJ6 A; 4YZX A; 2V5I A; 1O8M A; 1QQ1 A; 3SZE A; 1CLW A; #chains in the Genus database with same CATH homology 3GQ8 A; 1L1I A; 3GQ7 A; 3SUC A; 1L0S A; 1M8N A; 1EZG A; 3GQA A; 1EWW A; 1N4I A; 3GQ9 A; 1Z2F A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
