1K7TA

Crystal structure analysis of crosslinked-wga3/glcnacbeta1,6gal complex
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
171
structure length
171
Chain Sequence
ERCGEQGSGMECPNNLCCSQYGYCGMGGDYCGKGCQNGACWTSKRCGSQAGGKTCPNNHCCSQYGHCGFGAEYCGAGCQGGPCRADIKCGSQAGGKLCPNNLCCSQWGYCGLGSEFCGEGCQNGACSTDKPCGKDAGGRVCTNNYCCSKWGSCGIGPGYCGAGCQSGGCDG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Sugar binding protein
publication title Interactions of wheat-germ agglutinin with GlcNAc beta 1,6Gal sequence
pubmed doi rcsb
molecule keywords agglutinin isolectin 3
total genus 40
structure length 171
sequence length 171
chains with identical sequence B
ec nomenclature
pdb deposition date 2001-10-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00187 Chitin_bind_1 Chitin recognition protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 1k7tA02
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 1k7tA03
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 1k7tA01
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 1k7tA04
1P9ZA 1Q9BA 1WGCA 1K7VA 4MPIA 2CWGA 2DKVA 4WP4A 1WKXA 1P9GA 1ULNA 2WGCA 2LB7A 2X52A 1K7UA 9WGAA 1K7TA 2X3TA 1ULKA 4AMLA 1HEVA 1ULMA 1WGTA 2UVOA 1UHAA 7WGAA
chains in the Genus database with same CATH superfamily
1PCEA 1TGSI 4GI3C 2N52A 1P9ZA 3UGLA 2OZUA 2CWFA 4E1PA 2LEOA 1Y1CA 4MPIA 1S20A 1CE3A 1M8CA 1TBQR 2DKVA 2LUYA 1SGPI 1CSOI 3OXLA 4WP4A 1V1HA 2QPOA 5FUVA 2WCYA 2ROWA 1P9GA 2JXDA 2OVOA 4A24A 2N71A 2LB7A 3RU0A 1CGJI 3QTLD 2ARPF 2N17A 3KY9A 3SGQI 5HQ8A 2SGFI 4B6DA 2ERWA 3VE5A 1KBEA 1NUBA 2GKRI 2UZ3A 3E59A 1XBTA 2VRWB 3QAHA 4AMLA 5J8FA 1ULMA 3FSYA 3BJIA 1Z7KB 1HEVA 1OYVI 1W4RA 1WTJA 1Y1BA 1YU6C 2A20A 1TUSA 2B8TA 2BUSA 1LR9A 2K9HA 3R5CA 1MJAA 1MJBA 1PJUA 3R5BA 1Q9BA 1CT2I 5JHWC 2QQEA 3GOXA 3OL0A 1AN1I 2L7XA 4L9MA 1UVGA 1W3SA 3UGIA 2V1CA 2NU3I 2ENNA 5J8CA 5E3RA 4HGUA 3VDPA 2NU1I 3B4VC 2JZMA 3OXFA 2KMQA 5FUWA 1WKXA 2WGCA 1UUCA 2N1AB 2YUUA 5CCMA 1YTPA 2QQ0A 2DB6A 5FUXA 5HI7A 3TO6A 2JA1A 3UEJA 9WGAA 2ODDA 3PDNA 2E73A 1K7TA 1SGNI 4UXJA 1Y8FA 2OD1A 2ENZA 3VDUA 1HJAI 2ELIA 3D00A 1CHOI 2E5RA 1IY5A 1TOTA 2J87A 1HDLA 1UHAA 1Z2IA 2SGQI 3R5AA 1IW4A 1DS3I 2L8EA 1HPTA 1LR8A 3FSXA 2B0UC 4DNCA 2DIPA 1CT4I 1K7VA 1FYBA 1PTRA 1RFHA 1TIHA 5CCLA 1V1IA 2FNFX 1XX6A 5E3QA 3UEYA 2CWGA 1FARA 1X4SA 1NXUA 2YQPA 1CT0I 1PTQA 2M5XA 1KMAA 2NU0I 1LR7A 1ULNA 1VDDA 2GKTI 2ORWA 5E3PA 3SEKC 2CWHA 2JYYA 1H0ZA 4OVOA 2JW6A 2CJSC 2PQ8A 2ORVA 3CXLA 4FKDA 2RIJA 1BUSA 1IY6A 1CGII 2SGPI 3TO7A 2SGEI 3OXGA 2QQDA 1DS2I 1U5KA 1SGDI 1TBRR 2KMRA 1R79A 1FY7A 1ULKA 2GKVA 2X3TA 2Y0MA 2NU4I 3UFFA 4JCVE 3TOAA 1WGTA 2XRCA 5EX3A 1MJ9A 2NU2I 4UXIA 7WGAA 3TO9A 1FAQA 2KCXA 2RC4A 4UXHA 1WGCA 1TURA 2V1CC 1KBFA 1UVFA 2SGDI 3TOBA 2W0TA 1SGYI 2V53A 1XA6A 2GVIA 3R5DA 1N13A 2KMOA 3OVOA 3TJQA 3FC3A 2OU2A 2WVJA 1R0RI 2F3CI 2QQCA 5FUYA 4E1RA 1BMOA 1TBOA 1X74A 2P6AC 3MEKA 2X52A 1K7UA 1SGRI 1OMTA 1PPFI 1SGEI 1TBNA 3UGDA 3HH2C 2KMPA 1OMUA 3SGBI 4SGBI 3QWPA 1MT1A 1SGQI 5EX0A 1M8BA 3E2IA 1OVOA 5DAEA 3UOEA 2UVOA 2J9RA 2GIVA
chains in the Genus database with same CATH topology
1P9ZA 1Q9BA 1WGCA 1K7VA 4MPIA 2CWGA 2DKVA 4WP4A 1WKXA 1P9GA 1ULNA 2WGCA 2LB7A 2X52A 1K7UA 9WGAA 1K7TA 2X3TA 1ULKA 4AMLA 1HEVA 1ULMA 1WGTA 2UVOA 1UHAA 7WGAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1P9Z A;  1Q9B A;  1WGC A;  1K7V A;  4MPI A;  2CWG A;  2DKV A;  4WP4 A;  1WKX A;  1P9G A;  1ULN A;  2WGC A;  2LB7 A;  2X52 A;  1K7U A;  9WGA A;  1K7T A;  2X3T A;  1ULK A;  4AML A;  1HEV A;  1ULM A;  1WGT A;  2UVO A;  1UHA A;  7WGA A; 
#chains in the Genus database with same CATH topology
 1PCE A;  1TGS I;  4GI3 C;  2N52 A;  1P9Z A;  3UGL A;  2OZU A;  2CWF A;  4E1P A;  2LEO A;  1Y1C A;  4MPI A;  1S20 A;  1CE3 A;  1M8C A;  1TBQ R;  2DKV A;  2LUY A;  1SGP I;  1CSO I;  3OXL A;  4WP4 A;  1V1H A;  2QPO A;  5FUV A;  2WCY A;  2ROW A;  1P9G A;  2JXD A;  2OVO A;  4A24 A;  2N71 A;  2LB7 A;  3RU0 A;  1CGJ I;  3QTL D;  2ARP F;  2N17 A;  3KY9 A;  3SGQ I;  5HQ8 A;  2SGF I;  4B6D A;  2ERW A;  3VE5 A;  1KBE A;  1NUB A;  2GKR I;  2UZ3 A;  3E59 A;  1XBT A;  2VRW B;  3QAH A;  4AML A;  5J8F A;  1ULM A;  3FSY A;  3BJI A;  1Z7K B;  1HEV A;  1OYV I;  1W4R A;  1WTJ A;  1Y1B A;  1YU6 C;  2A20 A;  1TUS A;  2B8T A;  2BUS A;  1LR9 A;  2K9H A;  3R5C A;  1MJA A;  1MJB A;  1PJU A;  3R5B A;  1Q9B A;  1CT2 I;  5JHW C;  2QQE A;  3GOX A;  3OL0 A;  1AN1 I;  2L7X A;  4L9M A;  1UVG A;  1W3S A;  3UGI A;  2V1C A;  2NU3 I;  2ENN A;  5J8C A;  5E3R A;  4HGU A;  3VDP A;  2NU1 I;  3B4V C;  2JZM A;  3OXF A;  2KMQ A;  5FUW A;  1WKX A;  2WGC A;  1UUC A;  2N1A B;  2YUU A;  5CCM A;  1YTP A;  2QQ0 A;  2DB6 A;  5FUX A;  5HI7 A;  3TO6 A;  2JA1 A;  3UEJ A;  9WGA A;  2ODD A;  3PDN A;  2E73 A;  1K7T A;  1SGN I;  4UXJ A;  1Y8F A;  2OD1 A;  2ENZ A;  3VDU A;  1HJA I;  2ELI A;  3D00 A;  1CHO I;  2E5R A;  1IY5 A;  1TOT A;  2J87 A;  1HDL A;  1UHA A;  1Z2I A;  2SGQ I;  3R5A A;  1IW4 A;  1DS3 I;  2L8E A;  1HPT A;  1LR8 A;  3FSX A;  2B0U C;  4DNC A;  2DIP A;  1CT4 I;  1K7V A;  1FYB A;  1PTR A;  1RFH A;  1TIH A;  5CCL A;  1V1I A;  2FNF X;  1XX6 A;  5E3Q A;  3UEY A;  2CWG A;  1FAR A;  1X4S A;  1NXU A;  2YQP A;  1CT0 I;  1PTQ A;  2M5X A;  1KMA A;  2NU0 I;  1LR7 A;  1ULN A;  1VDD A;  2GKT I;  2ORW A;  5E3P A;  3SEK C;  2CWH A;  2JYY A;  1H0Z A;  4OVO A;  2JW6 A;  2CJS C;  2PQ8 A;  2ORV A;  3CXL A;  4FKD A;  2RIJ A;  1BUS A;  1IY6 A;  1CGI I;  2SGP I;  3TO7 A;  2SGE I;  3OXG A;  2QQD A;  1DS2 I;  1U5K A;  1SGD I;  1TBR R;  2KMR A;  1R79 A;  1FY7 A;  1ULK A;  2GKV A;  2X3T A;  2Y0M A;  2NU4 I;  3UFF A;  4JCV E;  3TOA A;  1WGT A;  2XRC A;  5EX3 A;  1MJ9 A;  2NU2 I;  4UXI A;  7WGA A;  3TO9 A;  1FAQ A;  2KCX A;  2RC4 A;  4UXH A;  1WGC A;  1TUR A;  2V1C C;  1KBF A;  1UVF A;  2SGD I;  3TOB A;  2W0T A;  1SGY I;  2V53 A;  1XA6 A;  2GVI A;  3R5D A;  1N13 A;  2KMO A;  3OVO A;  3TJQ A;  3FC3 A;  2OU2 A;  2WVJ A;  1R0R I;  2F3C I;  2QQC A;  5FUY A;  4E1R A;  1BMO A;  1TBO A;  1X74 A;  2P6A C;  3MEK A;  2X52 A;  1K7U A;  1SGR I;  1OMT A;  1PPF I;  1SGE I;  1TBN A;  3UGD A;  3HH2 C;  2KMP A;  1OMU A;  3SGB I;  4SGB I;  3QWP A;  1MT1 A;  1SGQ I;  5EX0 A;  1M8B A;  3E2I A;  1OVO A;  5DAE A;  3UOE A;  2UVO A;  2J9R A;  2GIV A; 
#chains in the Genus database with same CATH homology
 1P9Z A;  1Q9B A;  1WGC A;  1K7V A;  4MPI A;  2CWG A;  2DKV A;  4WP4 A;  1WKX A;  1P9G A;  1ULN A;  2WGC A;  2LB7 A;  2X52 A;  1K7U A;  9WGA A;  1K7T A;  2X3T A;  1ULK A;  4AML A;  1HEV A;  1ULM A;  1WGT A;  2UVO A;  1UHA A;  7WGA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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