1K7UA

Crystal structure analysis of crosslinked-wga3/glcnacbeta1,4glcnac complex
Total Genus 45
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
171
structure length
171
Chain Sequence
ERCGEQGSGMECPNNLCCSQYGYCGMGGDYCGKGCQNGACWTSKRCGSQAGGKTCPNNHCCSQYGHCGFGAEYCGAGCQGGPCRADIKCGSQAGGKLCPNNLCCSQWGYCGLGSEFCGEGCQNGACSTDKPCGKDAGGRVCTNNYCCSKWGSCGIGPGYCGAGCQSGGCDG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Interactions of wheat-germ agglutinin with GlcNAc beta 1,6Gal sequence
pubmed doi rcsb
molecule tags Sugar binding protein
molecule keywords agglutinin isolectin 3
total genus 45
structure length 171
sequence length 171
chains with identical sequence B
ec nomenclature
pdb deposition date 2001-10-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00187 Chitin_bind_1 Chitin recognition protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 1k7uA02
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 1k7uA03
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 1k7uA01
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 1k7uA04
7WGAA 4WP4A 1Q9BA 1ULNA 4MPIA 2LB7A 1UHAA 2WGCA 1ULKA 1WGTA 2DKVA 1P9ZA 1ULMA 1WKXA 1HEVA 2X3TA 2CWGA 1WGCA 9WGAA 1K7UA 1P9GA 2X52A 1K7VA 1K7TA 2UVOA 4AMLA
chains in the Genus database with same CATH superfamily
2L8EA 5E3PA 4A24A 4UXHA 4WP4A 3VE5A 1H0ZA 1TBQR 4JCVE 4E1RA 4UXJA 2GKTI 1UVGA 3FSXA 3PDNA 2OVOA 2E5RA 1Z2IA 4UXIA 1ULKA 3UGDA 3VDPA 2GKRI 2QQ0A 1CSOI 1M8CA 2GVIA 2JYYA 4GI3C 1SGRI 4L9MA 1S20A 1AN1I 1V1HA 2GIVA 2SGEI 3QAHA 1PPFI 3SGQI 2CJSC 2QQEA 2YUUA 3R5BA 1SGNI 2JXDA 2N71A 4HGUA 4DNCA 2QQCA 2KMRA 5FUVA 2ROWA 1PCEA 1V1IA 1ULMA 1W4RA 2JA1A 2SGFI 1HEVA 3TJQA 2ELIA 4E1PA 2ENZA 2N17A 1WGCA 2JW6A 1K7UA 1P9GA 2A20A 4FKDA 2KCXA 1XX6A 2UVOA 4AMLA 1CGJI 1N13A 1OMTA 3HH2C 1SGYI 1CE3A 2LB7A 2QPOA 1Y1CA 1IY6A 1LR8A 2KMPA 3MEKA 5JHWC 1UVFA 1WGTA 2GKVA 2SGQI 2N1AB 3R5AA 1TBRR 4SGBI 1BUSA 2PQ8A 1OVOA 1R0RI 3R5DA 1TBOA 2FNFX 1PJUA 3TOBA 5CCMA 3SEKC 1MJ9A 1OMUA 1TBNA 2CWHA 2M5XA 1MJAA 2VRWB 2SGDI 1XA6A 2DIPA 2WCYA 3TO7A 2V53A 2LUYA 3OXLA 1SGEI 2L7XA 3UFFA 1UUCA 1M8BA 1TIHA 3OXGA 3UOEA 1FYBA 2NU3I 1HDLA 1FAQA 1KBFA 3D00A 1MJBA 1TOTA 1Y1BA 1NXUA 1PTRA 1YTPA 3UGLA 1TURA 2ORVA 2OU2A 1X4SA 2OD1A 1RFHA 1CT2I 1SGDI 1Q9BA 1CT4I 1ULNA 2OZUA 4MPIA 1CT0I 1UHAA 2QQDA 2J9RA 5E3QA 1VDDA 2W0TA 1WTJA 1W3SA 4B6DA 3FC3A 2NU0I 2B0UC 2J87A 3R5CA 3E59A 1CGII 1DS2I 4OVOA 2V1CC 2DKVA 2E73A 3VDUA 2P6AC 2NU4I 3B4VC 3GOXA 2F3CI 5DAEA 1P9ZA 2K9HA 3KY9A 3E2IA 2DB6A 1U5KA 1DS3I 3UGIA 2Y0MA 1IY5A 2UZ3A 5E3RA 1WKXA 2N52A 2KMOA 5FUWA 1LR7A 2JZMA 1X74A 1SGQI 5CCLA 1HPTA 5FUYA 9WGAA 5EX3A 2X52A 2NU2I 2ERWA 1NUBA 2NU1I 1YU6C 7WGAA 1Z7KB 1SGPI 2KMQA 1FY7A 2SGPI 5HI7A 3TOAA 2RC4A 1OYVI 2WGCA 5J8FA 1IW4A 1CHOI 3CXLA 5J8CA 3QTLD 1PTQA 2WVJA 2LEOA 3BJIA 1KBEA 3OVOA 1Y8FA 3RU0A 3TO9A 5HQ8A 2XRCA 3OXFA 3TO6A 2ENNA 2ARPF 1LR9A 1TGSI 2V1CA 5FUXA 1XBTA 3OL0A 2CWFA 2B8TA 3SGBI 1MT1A 2ORWA 1TUSA 2X3TA 2CWGA 1KMAA 1R79A 1BMOA 2ODDA 2RIJA 2YQPA 2BUSA 1HJAI 3UEJA 1FARA 1K7TA 1K7VA 3FSYA 3QWPA 5EX0A 3UEYA
chains in the Genus database with same CATH topology
7WGAA 4WP4A 1Q9BA 1ULNA 4MPIA 2LB7A 1UHAA 2WGCA 1ULKA 1WGTA 2DKVA 1P9ZA 1ULMA 1WKXA 1HEVA 2X3TA 2CWGA 1WGCA 9WGAA 1K7UA 1P9GA 2X52A 1K7VA 1K7TA 2UVOA 4AMLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 7WGA A;  4WP4 A;  1Q9B A;  1ULN A;  4MPI A;  2LB7 A;  1UHA A;  2WGC A;  1ULK A;  1WGT A;  2DKV A;  1P9Z A;  1ULM A;  1WKX A;  1HEV A;  2X3T A;  2CWG A;  1WGC A;  9WGA A;  1K7U A;  1P9G A;  2X52 A;  1K7V A;  1K7T A;  2UVO A;  4AML A; 
#chains in the Genus database with same CATH topology
 2L8E A;  5E3P A;  4A24 A;  4UXH A;  4WP4 A;  3VE5 A;  1H0Z A;  1TBQ R;  4JCV E;  4E1R A;  4UXJ A;  2GKT I;  1UVG A;  3FSX A;  3PDN A;  2OVO A;  2E5R A;  1Z2I A;  4UXI A;  1ULK A;  3UGD A;  3VDP A;  2GKR I;  2QQ0 A;  1CSO I;  1M8C A;  2GVI A;  2JYY A;  4GI3 C;  1SGR I;  4L9M A;  1S20 A;  1AN1 I;  1V1H A;  2GIV A;  2SGE I;  3QAH A;  1PPF I;  3SGQ I;  2CJS C;  2QQE A;  2YUU A;  3R5B A;  1SGN I;  2JXD A;  2N71 A;  4HGU A;  4DNC A;  2QQC A;  2KMR A;  5FUV A;  2ROW A;  1PCE A;  1V1I A;  1ULM A;  1W4R A;  2JA1 A;  2SGF I;  1HEV A;  3TJQ A;  2ELI A;  4E1P A;  2ENZ A;  2N17 A;  1WGC A;  2JW6 A;  1K7U A;  1P9G A;  2A20 A;  4FKD A;  2KCX A;  1XX6 A;  2UVO A;  4AML A;  1CGJ I;  1N13 A;  1OMT A;  3HH2 C;  1SGY I;  1CE3 A;  2LB7 A;  2QPO A;  1Y1C A;  1IY6 A;  1LR8 A;  2KMP A;  3MEK A;  5JHW C;  1UVF A;  1WGT A;  2GKV A;  2SGQ I;  2N1A B;  3R5A A;  1TBR R;  4SGB I;  1BUS A;  2PQ8 A;  1OVO A;  1R0R I;  3R5D A;  1TBO A;  2FNF X;  1PJU A;  3TOB A;  5CCM A;  3SEK C;  1MJ9 A;  1OMU A;  1TBN A;  2CWH A;  2M5X A;  1MJA A;  2VRW B;  2SGD I;  1XA6 A;  2DIP A;  2WCY A;  3TO7 A;  2V53 A;  2LUY A;  3OXL A;  1SGE I;  2L7X A;  3UFF A;  1UUC A;  1M8B A;  1TIH A;  3OXG A;  3UOE A;  1FYB A;  2NU3 I;  1HDL A;  1FAQ A;  1KBF A;  3D00 A;  1MJB A;  1TOT A;  1Y1B A;  1NXU A;  1PTR A;  1YTP A;  3UGL A;  1TUR A;  2ORV A;  2OU2 A;  1X4S A;  2OD1 A;  1RFH A;  1CT2 I;  1SGD I;  1Q9B A;  1CT4 I;  1ULN A;  2OZU A;  4MPI A;  1CT0 I;  1UHA A;  2QQD A;  2J9R A;  5E3Q A;  1VDD A;  2W0T A;  1WTJ A;  1W3S A;  4B6D A;  3FC3 A;  2NU0 I;  2B0U C;  2J87 A;  3R5C A;  3E59 A;  1CGI I;  1DS2 I;  4OVO A;  2V1C C;  2DKV A;  2E73 A;  3VDU A;  2P6A C;  2NU4 I;  3B4V C;  3GOX A;  2F3C I;  5DAE A;  1P9Z A;  2K9H A;  3KY9 A;  3E2I A;  2DB6 A;  1U5K A;  1DS3 I;  3UGI A;  2Y0M A;  1IY5 A;  2UZ3 A;  5E3R A;  1WKX A;  2N52 A;  2KMO A;  5FUW A;  1LR7 A;  2JZM A;  1X74 A;  1SGQ I;  5CCL A;  1HPT A;  5FUY A;  9WGA A;  5EX3 A;  2X52 A;  2NU2 I;  2ERW A;  1NUB A;  2NU1 I;  1YU6 C;  7WGA A;  1Z7K B;  1SGP I;  2KMQ A;  1FY7 A;  2SGP I;  5HI7 A;  3TOA A;  2RC4 A;  1OYV I;  2WGC A;  5J8F A;  1IW4 A;  1CHO I;  3CXL A;  5J8C A;  3QTL D;  1PTQ A;  2WVJ A;  2LEO A;  3BJI A;  1KBE A;  3OVO A;  1Y8F A;  3RU0 A;  3TO9 A;  5HQ8 A;  2XRC A;  3OXF A;  3TO6 A;  2ENN A;  2ARP F;  1LR9 A;  1TGS I;  2V1C A;  5FUX A;  1XBT A;  3OL0 A;  2CWF A;  2B8T A;  3SGB I;  1MT1 A;  2ORW A;  1TUS A;  2X3T A;  2CWG A;  1KMA A;  1R79 A;  1BMO A;  2ODD A;  2RIJ A;  2YQP A;  2BUS A;  1HJA I;  3UEJ A;  1FAR A;  1K7T A;  1K7V A;  3FSY A;  3QWP A;  5EX0 A;  3UEY A; 
#chains in the Genus database with same CATH homology
 7WGA A;  4WP4 A;  1Q9B A;  1ULN A;  4MPI A;  2LB7 A;  1UHA A;  2WGC A;  1ULK A;  1WGT A;  2DKV A;  1P9Z A;  1ULM A;  1WKX A;  1HEV A;  2X3T A;  2CWG A;  1WGC A;  9WGA A;  1K7U A;  1P9G A;  2X52 A;  1K7V A;  1K7T A;  2UVO A;  4AML A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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