The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
16
|
sequence length |
84
|
structure length |
84
|
Chain Sequence |
QCTGGADCTSCTGACTGCGNCPNAVTCTNSQHCVKANTCTGSTDCNTAQTCTNSKDCFEANTCTDSTNCYKATACTNSSGCPGH
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structure and dynamics of a beta-helical antifreeze protein.
pubmed doi rcsb |
| molecule keywords |
Thermal hysteresis protein isoform YL-1 (2-14)
|
| molecule tags |
Antifreeze protein
|
| source organism |
Tenebrio molitor
|
| total genus |
16
|
| structure length |
84
|
| sequence length |
84
|
| ec nomenclature | |
| pdb deposition date | 2002-02-16 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF02420 | AFP | Insect antifreeze protein repeat |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | 3 Solenoid | Pectate Lyase C-like | Insect antifreeze protein |
#chains in the Genus database with same CATH superfamily 1L1I A; 1EZG A; #chains in the Genus database with same CATH topology 1L1I A; 4YDT A; 2V5I A; 2XTW A; 3BH7 B; 2QX3 A; 1O8G A; 1O8K A; 4OPW A; 3ZPP A; 1OOC A; 1JTA A; 1TSP A; 2QYU A; 4YCQ A; 3VSV A; 3ML3 A; 3LYC A; 2J8K A; 4XOP A; 4AVZ A; 3H09 A; 1OGM X; 2X85 A; 3EQN A; 3JUR A; 3B4N A; 1DBO A; 3VST A; 1K8F A; 1KCC A; 3RIQ A; 4I84 A; 4XLF A; 1KCD A; 4OJ5 A; 1TYW A; 3PSS A; 4YEL A; 4W8S A; 1PXZ A; 1PLU A; 1O8L A; 2BM7 A; 1EA0 A; 4XL9 A; 4YFO A; 1DAB A; 2YUH A; 4XMY A; 4XLC A; 3GQ9 A; 2IQ7 A; 4W8R A; 2BM6 A; 1GQ8 A; 1HF2 A; 3B8Y A; 1QA3 A; 4XKW A; 4YZA A; 1CZF A; 1O8J A; 3KRG A; 4XR6 A; 4XOT A; 2PEC A; 2QXZ A; 4MXN A; 5DNS A; 1QRC A; 2VJJ A; 4U4B A; 1QCX A; 4HWV A; 2VFP A; 4U49 A; 5C1C A; 2VBE A; 4XLA A; 2PYH A; 1TYV A; 2O6W A; 2VFO A; 2XC1 A; 4OZY A; 1LM1 A; 2NT9 A; 1O8F A; 4YZ0 A; 1WXR A; 3EQO A; 4MR0 A; 2NT6 A; 1JRG A; 4EW9 A; 1IDJ A; 1XG2 A; 2BSP A; 1K4Z A; 2G0Y A; 4JRA C; 4XM3 A; 3TH0 A; 3N6Z A; 2BM4 A; 2QZA A; 2J8I A; 3DU1 X; 5JLV C; 2QY1 A; 4OM9 A; 3B90 A; 1O8I A; 2UVE A; 1VBL A; 4YZX A; 2O1D A; 3LMW A; 3BH6 B; 4OZZ A; 4OJ6 A; 3SYJ A; 1PE9 A; 4NK6 A; 4OJP A; 3GQ8 A; 2NZM A; 3VMW A; 2O0W A; 1QJV A; 5C1E A; 3FY3 A; 1X0C A; 3NAW A; 2BX6 A; 1QA2 A; 1O8H A; 3N90 A; 2XTX A; 1QA1 A; 4Z05 A; 2VJI A; 1OFL A; 2X6W A; 2VFM A; 4YZQ A; 4OJO A; 4XOR A; 3UW0 A; 2XT2 A; 2UVF A; 1O88 A; 1OFD A; 3GQA A; 4OJL A; 4XLE A; 2NTQ A; 4Z03 A; 3SUC A; 3SY2 A; 2IOU G; 1QQ1 A; 2NTB A; 2NTP A; 2Z8G A; 4YEJ A; 2X3H A; 1QRB A; 3SQV A; 3VMV A; 2XTY A; 1O8E A; 4YEI A; 1KTW A; 4YC5 A; 4XKV A; 2F3L A; 2VFN A; 2XT4 A; 3GQ7 A; 4KH3 A; 4XNF A; 3SZE A; 1O8D A; 2PYG A; 3P4G A; 1LLZ A; 2INV A; 4Z06 A; 1OGO X; 1TYX A; 2NSP A; 2BM5 A; 4W8T A; 4XN0 A; 1IA5 A; 3PET A; 2NST A; 1HG8 A; 4PMH A; 3PSZ A; 1K5C A; 3NB2 A; 4V02 C; 1LLW A; 1EZG A; 1BHE A; 3GRH A; 2X6Y A; 1BN8 A; 4W8Q A; 1RMG A; 1H80 A; 1OFM A; 3WWG A; 1AIR A; 2VBM A; 2O0V A; 2EWE A; 2O17 A; 1CLW A; 4C2L A; 4XQF A; 3ZSC A; 1IDK A; 2ODL A; 3T9G A; 1O8M A; 1KQ5 A; 1OFE A; 4XLH A; 4XON A; 4NK8 A; 3LJY A; 5JMC B; 3JX8 A; 1NHC A; 1RWR A; 2B0R A; 2X6X A; 1EE6 A; 1DBG A; 1IB4 A; 1TYU A; 5AMV A; 3VSU A; 2VBK A; 3AK5 A; 2INU A; 2O04 A; 4URR A; 4XN3 A; 2VFQ A; 1RU4 A; 2W7Z A; 1WMR A; #chains in the Genus database with same CATH homology 1L1I A; 3GQA A; 1N4I A; 1L0S A; 3SUC A; 1Z2F A; 3GQ8 A; 3GQ9 A; 1EZG A; 1M8N A; 1EWW A; 3GQ7 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
