1FYB | Genus

Total Genus 12

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	12
sequence length	111
structure length	111
Chain Sequence	DRICTNCCAGTKGCKYFSDDGTFVCEGESDPRNPKACTLNCDPRIAYGVCPRSEEKKNDRICTNCCAGTKGCKYFSDDGTFVCEGESDPRNPKACPRNCDPRIAYGICPLA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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Viewer cachePut cache://localLOAD_/file/5d29ac3c852c07867a28c764/pdb.gz

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The Resolver thinks Pdb

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Time for openFile(/file/5d29ac3c852c07867a28c764/pdb.gz): 1353 ms

reading 111 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

111 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 18 ms

Adding embedded #jmolscript: select ({0:110});backbone only;select *;

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase inhibitor
source organism	Nicotiana alata
publication title	The solution structure of C1-T1, a two-domain proteinase inhibitor derived from a circular precursor protein from Nicotiana alata. pubmed doi rcsb
molecule keywords	PROTEINASE INHIBITOR
total genus	12
structure length	111
sequence length	111
ec nomenclature
pdb deposition date	2000-09-28

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF02428	Prot_inhib_II	Potato type II proteinase inhibitor family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.60.30	Alpha Beta	2-Layer Sandwich	Wheat Germ Agglutinin (Isolectin 2); domain 1	Wheat Germ Agglutinin (Isolectin 2); domain 1	1fybA02
3.30.60.30	Alpha Beta	2-Layer Sandwich	Wheat Germ Agglutinin (Isolectin 2); domain 1	Wheat Germ Agglutinin (Isolectin 2); domain 1	1fybA01

5JHWC 1TBQR 1TURA 1UVGA 2WCYA 4GI3C 1SGQI 1CT2I 4OVOA 2B0UC 3SEKC 1AN1I 1SGYI 2KMOA 1IW4A 4HGUA 2P6AC 2M5XA 2XRCA 3SGBI 1MT1A 1LR9A 2OVOA 1Y1CA 2F3CI 2SGQI 1TUSA 2JZMA 1CGJI 2SGDI 2N71A 1IY5A 1CGII 1Z7KB 5DAEA 1SGDI 2JXDA 2N52A 1UVFA 1CHOI 2NU1I 1CT0I 1CT4I 1Y1BA 1H0ZA 1HPTA 1DS3I 1YU6C 1HJAI 2V53A 3SGQI 2SGFI 1PCEA 1SGRI 2ARPF 1CSOI 1NUBA 2KMQA 1SGPI 1YTPA 2GKVA 1M8CA 1IY6A 1OYVI 3TJQA 1UUCA 3HH2C 3OVOA 1PPFI 2GKRI 1OMTA 1TIHA 2KMRA 1TGSI 2BUSA 2ERWA 2SGEI 2JYYA 2KMPA 1KMAA 2NU2I 1R0RI 1TBRR 1DS2I 2QQDA 1LR8A 1SGNI 2N17A 2SGPI 2LEOA 4SGBI 3QTLD 1BUSA 2NU3I 1SGEI 2NU4I 1FYBA 2GKTI 1BMOA 1N13A 1OMUA 1PJUA 3B4VC 1OVOA 2QQCA 1LR7A 1M8BA 1HDLA 2NU0I 1CE3A 2KCXA
chains in the Genus database with same CATH superfamily

5E3QA 1Z2IA 2B8TA 2QPOA 2YQPA 1TBQR 1TURA 3OXLA 1UVGA 1W4RA 2ELIA 2LUYA 2WCYA 3FSXA 4GI3C 4UXIA 1SGQI 4B6DA 4UXHA 1CT2I 4OVOA 1UHAA 2B0UC 5FUYA 3VDUA 1X4SA 3UGLA 3RU0A 1WTJA 3R5CA 1NXUA 1R79A 2J9RA 2WGCA 2VRWB 3SEKC 1AN1I 1SGYI 2ENZA 2KMOA 1IW4A 3D00A 3UEJA 2NU0I 4HGUA 1ULNA 2P6AC 2M5XA 2RIJA 2XRCA 1MT1A 3BJIA 3SGBI 4DNCA 1LR9A 2OVOA 1TOTA 3UEYA 1Y1CA 2F3CI 2SGQI 1TUSA 3OXFA 4WP4A 2JZMA 1CGJI 2QQEA 3MEKA 1WGTA 1Q9BA 2SGDI 2N71A 1IY5A 4JCVE 5FUXA 1V1IA 1V1HA 9WGAA 1RFHA 1CGII 1Z7KB 5DAEA 1SGDI 1K7VA 2JXDA 3TO6A 2N52A 3TOAA 1UVFA 1CHOI 2NU1I 1CT0I 2X3TA 1CT4I 1Y1BA 1XX6A 1H0ZA 1XBTA 1HPTA 3TO7A 2ORVA 1DS3I 1YU6C 2YUUA 3QAHA 1P9GA 3QWPA 3TOBA 1PTRA 2LB7A 1HJAI 3R5BA 2V1CC 3PDNA 2V53A 3SGQI 5HI7A 5CCLA 2SGFI 1PCEA 2GIVA 2J87A 2L7XA 2A20A 1SGRI 1XA6A 2ARPF 1CSOI 1ULMA 1WKXA 2ORWA 1NUBA 2KMQA 1SGPI 1X74A 1YTPA 2FNFX 2GKVA 1M8CA 4E1PA 1IY6A 1ULKA 1OYVI 1TBNA 2E5RA 4UXJA 3TJQA 1Y8FA 1UUCA 1MJBA 2QQ0A 3HH2C 3OVOA 3UFFA 1KBFA 2OU2A 5E3PA 1PPFI 3R5AA 5EX0A 3UGIA 1FY7A 3OXGA 2GKRI 2RC4A 1OMTA 1TIHA 5FUVA 2DB6A 4FKDA 2KMRA 4L9MA 2DIPA 2E73A 5FUWA 1TGSI 3UGDA 3GOXA 1PTQA 2BUSA 2ERWA 2Y0MA 2JW6A 2L8EA 3CXLA 2SGEI 1WGCA 2CWHA 3OL0A 3R5DA 1K7UA 4MPIA 2JYYA 2OD1A 2KMPA 3VE5A 3E59A 2GVIA 5E3RA 1KMAA 2NU2I 2V1CA 3FSYA 2ODDA 3TO9A 4AMLA 7WGAA 1W3SA 2WVJA 2ROWA 2UVOA 2X52A 1R0RI 2N1AB 1TBRR 1MJAA 2CJSC 1DS2I 1MJ9A 1VDDA 2PQ8A 2QQDA 3VDPA 4E1RA 2OZUA 1K7TA 1LR8A 1SGNI 2N17A 5J8FA 2SGPI 2LEOA 3FC3A 1HEVA 4SGBI 2DKVA 3QTLD 1BUSA 3KY9A 2NU3I 1SGEI 4A24A 5EX3A 2ENNA 2NU4I 3UOEA 1FYBA 1P9ZA 2GKTI 1BMOA 1N13A 1OMUA 1PJUA 3B4VC 2CWGA 2JA1A 1FARA 5HQ8A 1OVOA 2QQCA 1TBOA 1FAQA 1LR7A 1M8BA 2W0TA 1HDLA 3E2IA 1KBEA 1U5KA 2CWFA 5J8CA 1S20A 2UZ3A 5CCMA 5JHWC 2K9HA 1CE3A 2KCXA
chains in the Genus database with same CATH topology

2B8TA 2QPOA 2YQPA 1TBQR 1TURA 3OXLA 1UVGA 1W4RA 2ELIA 2LUYA 2WCYA 5JHWC 4GI3C 4UXIA 1SGQI 4B6DA 4UXHA 1CT2I 4OVOA 2B0UC 5FUYA 3VDUA 1X4SA 3UGLA 3RU0A 1R79A 2J9RA 2VRWB 3SEKC 1AN1I 1SGYI 2ENZA 2KMOA 1IW4A 3D00A 3UEJA 2NU0I 4HGUA 2P6AC 2M5XA 2XRCA 3BJIA 1MT1A 3SGBI 1LR9A 2OVOA 1TOTA 3UEYA 1Y1CA 2F3CI 2SGQI 1TUSA 3OXFA 2JZMA 1CGJI 2QQEA 3MEKA 2SGDI 2N71A 1IY5A 4JCVE 5FUXA 1V1IA 1V1HA 1RFHA 1CGII 1Z7KB 5DAEA 1SGDI 2JXDA 2N52A 1UVFA 1CHOI 2NU1I 1CT0I 1CT4I 1Y1BA 1XX6A 1H0ZA 1XBTA 1HPTA 2ORVA 1DS3I 1YU6C 2YUUA 3QWPA 1PTRA 1HJAI 2V1CC 3PDNA 2V53A 3SGQI 5HI7A 5CCLA 2SGFI 1PCEA 2J87A 2L7XA 2A20A 1SGRI 1XA6A 2ARPF 1CSOI 2ORWA 1NUBA 2KMQA 1SGPI 1X74A 1YTPA 2FNFX 2GKVA 1M8CA 4E1PA 1IY6A 1OYVI 1TBNA 2E5RA 4UXJA 3TJQA 1Y8FA 1UUCA 2QQ0A 3HH2C 3OVOA 3UFFA 1KBFA 1PPFI 5EX0A 3UGIA 3OXGA 2GKRI 1OMTA 1TIHA 5FUVA 2DB6A 4FKDA 2KMRA 4L9MA 2DIPA 2E73A 5FUWA 1TGSI 3UGDA 3GOXA 1PTQA 2BUSA 2ERWA 2JW6A 2L8EA 3CXLA 2SGEI 3OL0A 2JYYA 2OD1A 2KMPA 3VE5A 3E59A 2GVIA 1KMAA 2NU2I 2V1CA 2ODDA 1W3SA 2WVJA 2ROWA 1R0RI 2N1AB 1TBRR 2CJSC 1DS2I 1VDDA 2QQDA 3VDPA 4E1RA 1LR8A 1SGNI 2N17A 2SGPI 2LEOA 3FC3A 4SGBI 3QTLD 1BUSA 3KY9A 2NU3I 1SGEI 4A24A 5EX3A 2ENNA 2NU4I 1FYBA 2GKTI 1BMOA 1N13A 1OMUA 1PJUA 3B4VC 2JA1A 1FARA 5HQ8A 1OVOA 2QQCA 1TBOA 1FAQA 1LR7A 1M8BA 2W0TA 1HDLA 3E2IA 1KBEA 1U5KA 2UZ3A 5CCMA 2K9HA 1CE3A 2KCXA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 5JHW C;  1TBQ R;  1TUR A;  1UVG A;  2WCY A;  4GI3 C;  1SGQ I;  1CT2 I;  4OVO A;  2B0U C;  3SEK C;  1AN1 I;  1SGY I;  2KMO A;  1IW4 A;  4HGU A;  2P6A C;  2M5X A;  2XRC A;  3SGB I;  1MT1 A;  1LR9 A;  2OVO A;  1Y1C A;  2F3C I;  2SGQ I;  1TUS A;  2JZM A;  1CGJ I;  2SGD I;  2N71 A;  1IY5 A;  1CGI I;  1Z7K B;  5DAE A;  1SGD I;  2JXD A;  2N52 A;  1UVF A;  1CHO I;  2NU1 I;  1CT0 I;  1CT4 I;  1Y1B A;  1H0Z A;  1HPT A;  1DS3 I;  1YU6 C;  1HJA I;  2V53 A;  3SGQ I;  2SGF I;  1PCE A;  1SGR I;  2ARP F;  1CSO I;  1NUB A;  2KMQ A;  1SGP I;  1YTP A;  2GKV A;  1M8C A;  1IY6 A;  1OYV I;  3TJQ A;  1UUC A;  3HH2 C;  3OVO A;  1PPF I;  2GKR I;  1OMT A;  1TIH A;  2KMR A;  1TGS I;  2BUS A;  2ERW A;  2SGE I;  2JYY A;  2KMP A;  1KMA A;  2NU2 I;  1R0R I;  1TBR R;  1DS2 I;  2QQD A;  1LR8 A;  1SGN I;  2N17 A;  2SGP I;  2LEO A;  4SGB I;  3QTL D;  1BUS A;  2NU3 I;  1SGE I;  2NU4 I;  1FYB A;  2GKT I;  1BMO A;  1N13 A;  1OMU A;  1PJU A;  3B4V C;  1OVO A;  2QQC A;  1LR7 A;  1M8B A;  1HDL A;  2NU0 I;  1CE3 A;  2KCX A; 
#chains in the Genus database with same CATH topology
 5E3Q A;  1Z2I A;  2B8T A;  2QPO A;  2YQP A;  1TBQ R;  1TUR A;  3OXL A;  1UVG A;  1W4R A;  2ELI A;  2LUY A;  2WCY A;  3FSX A;  4GI3 C;  4UXI A;  1SGQ I;  4B6D A;  4UXH A;  1CT2 I;  4OVO A;  1UHA A;  2B0U C;  5FUY A;  3VDU A;  1X4S A;  3UGL A;  3RU0 A;  1WTJ A;  3R5C A;  1NXU A;  1R79 A;  2J9R A;  2WGC A;  2VRW B;  3SEK C;  1AN1 I;  1SGY I;  2ENZ A;  2KMO A;  1IW4 A;  3D00 A;  3UEJ A;  2NU0 I;  4HGU A;  1ULN A;  2P6A C;  2M5X A;  2RIJ A;  2XRC A;  1MT1 A;  3BJI A;  3SGB I;  4DNC A;  1LR9 A;  2OVO A;  1TOT A;  3UEY A;  1Y1C A;  2F3C I;  2SGQ I;  1TUS A;  3OXF A;  4WP4 A;  2JZM A;  1CGJ I;  2QQE A;  3MEK A;  1WGT A;  1Q9B A;  2SGD I;  2N71 A;  1IY5 A;  4JCV E;  5FUX A;  1V1I A;  1V1H A;  9WGA A;  1RFH A;  1CGI I;  1Z7K B;  5DAE A;  1SGD I;  1K7V A;  2JXD A;  3TO6 A;  2N52 A;  3TOA A;  1UVF A;  1CHO I;  2NU1 I;  1CT0 I;  2X3T A;  1CT4 I;  1Y1B A;  1XX6 A;  1H0Z A;  1XBT A;  1HPT A;  3TO7 A;  2ORV A;  1DS3 I;  1YU6 C;  2YUU A;  3QAH A;  1P9G A;  3QWP A;  3TOB A;  1PTR A;  2LB7 A;  1HJA I;  3R5B A;  2V1C C;  3PDN A;  2V53 A;  3SGQ I;  5HI7 A;  5CCL A;  2SGF I;  1PCE A;  2GIV A;  2J87 A;  2L7X A;  2A20 A;  1SGR I;  1XA6 A;  2ARP F;  1CSO I;  1ULM A;  1WKX A;  2ORW A;  1NUB A;  2KMQ A;  1SGP I;  1X74 A;  1YTP A;  2FNF X;  2GKV A;  1M8C A;  4E1P A;  1IY6 A;  1ULK A;  1OYV I;  1TBN A;  2E5R A;  4UXJ A;  3TJQ A;  1Y8F A;  1UUC A;  1MJB A;  2QQ0 A;  3HH2 C;  3OVO A;  3UFF A;  1KBF A;  2OU2 A;  5E3P A;  1PPF I;  3R5A A;  5EX0 A;  3UGI A;  1FY7 A;  3OXG A;  2GKR I;  2RC4 A;  1OMT A;  1TIH A;  5FUV A;  2DB6 A;  4FKD A;  2KMR A;  4L9M A;  2DIP A;  2E73 A;  5FUW A;  1TGS I;  3UGD A;  3GOX A;  1PTQ A;  2BUS A;  2ERW A;  2Y0M A;  2JW6 A;  2L8E A;  3CXL A;  2SGE I;  1WGC A;  2CWH A;  3OL0 A;  3R5D A;  1K7U A;  4MPI A;  2JYY A;  2OD1 A;  2KMP A;  3VE5 A;  3E59 A;  2GVI A;  5E3R A;  1KMA A;  2NU2 I;  2V1C A;  3FSY A;  2ODD A;  3TO9 A;  4AML A;  7WGA A;  1W3S A;  2WVJ A;  2ROW A;  2UVO A;  2X52 A;  1R0R I;  2N1A B;  1TBR R;  1MJA A;  2CJS C;  1DS2 I;  1MJ9 A;  1VDD A;  2PQ8 A;  2QQD A;  3VDP A;  4E1R A;  2OZU A;  1K7T A;  1LR8 A;  1SGN I;  2N17 A;  5J8F A;  2SGP I;  2LEO A;  3FC3 A;  1HEV A;  4SGB I;  2DKV A;  3QTL D;  1BUS A;  3KY9 A;  2NU3 I;  1SGE I;  4A24 A;  5EX3 A;  2ENN A;  2NU4 I;  3UOE A;  1FYB A;  1P9Z A;  2GKT I;  1BMO A;  1N13 A;  1OMU A;  1PJU A;  3B4V C;  2CWG A;  2JA1 A;  1FAR A;  5HQ8 A;  1OVO A;  2QQC A;  1TBO A;  1FAQ A;  1LR7 A;  1M8B A;  2W0T A;  1HDL A;  3E2I A;  1KBE A;  1U5K A;  2CWF A;  5J8C A;  1S20 A;  2UZ3 A;  5CCM A;  5JHW C;  2K9H A;  1CE3 A;  2KCX A; 
#chains in the Genus database with same CATH homology
 2B8T A;  2QPO A;  2YQP A;  1TBQ R;  1TUR A;  3OXL A;  1UVG A;  1W4R A;  2ELI A;  2LUY A;  2WCY A;  5JHW C;  4GI3 C;  4UXI A;  1SGQ I;  4B6D A;  4UXH A;  1CT2 I;  4OVO A;  2B0U C;  5FUY A;  3VDU A;  1X4S A;  3UGL A;  3RU0 A;  1R79 A;  2J9R A;  2VRW B;  3SEK C;  1AN1 I;  1SGY I;  2ENZ A;  2KMO A;  1IW4 A;  3D00 A;  3UEJ A;  2NU0 I;  4HGU A;  2P6A C;  2M5X A;  2XRC A;  3BJI A;  1MT1 A;  3SGB I;  1LR9 A;  2OVO A;  1TOT A;  3UEY A;  1Y1C A;  2F3C I;  2SGQ I;  1TUS A;  3OXF A;  2JZM A;  1CGJ I;  2QQE A;  3MEK A;  2SGD I;  2N71 A;  1IY5 A;  4JCV E;  5FUX A;  1V1I A;  1V1H A;  1RFH A;  1CGI I;  1Z7K B;  5DAE A;  1SGD I;  2JXD A;  2N52 A;  1UVF A;  1CHO I;  2NU1 I;  1CT0 I;  1CT4 I;  1Y1B A;  1XX6 A;  1H0Z A;  1XBT A;  1HPT A;  2ORV A;  1DS3 I;  1YU6 C;  2YUU A;  3QWP A;  1PTR A;  1HJA I;  2V1C C;  3PDN A;  2V53 A;  3SGQ I;  5HI7 A;  5CCL A;  2SGF I;  1PCE A;  2J87 A;  2L7X A;  2A20 A;  1SGR I;  1XA6 A;  2ARP F;  1CSO I;  2ORW A;  1NUB A;  2KMQ A;  1SGP I;  1X74 A;  1YTP A;  2FNF X;  2GKV A;  1M8C A;  4E1P A;  1IY6 A;  1OYV I;  1TBN A;  2E5R A;  4UXJ A;  3TJQ A;  1Y8F A;  1UUC A;  2QQ0 A;  3HH2 C;  3OVO A;  3UFF A;  1KBF A;  1PPF I;  5EX0 A;  3UGI A;  3OXG A;  2GKR I;  1OMT A;  1TIH A;  5FUV A;  2DB6 A;  4FKD A;  2KMR A;  4L9M A;  2DIP A;  2E73 A;  5FUW A;  1TGS I;  3UGD A;  3GOX A;  1PTQ A;  2BUS A;  2ERW A;  2JW6 A;  2L8E A;  3CXL A;  2SGE I;  3OL0 A;  2JYY A;  2OD1 A;  2KMP A;  3VE5 A;  3E59 A;  2GVI A;  1KMA A;  2NU2 I;  2V1C A;  2ODD A;  1W3S A;  2WVJ A;  2ROW A;  1R0R I;  2N1A B;  1TBR R;  2CJS C;  1DS2 I;  1VDD A;  2QQD A;  3VDP A;  4E1R A;  1LR8 A;  1SGN I;  2N17 A;  2SGP I;  2LEO A;  3FC3 A;  4SGB I;  3QTL D;  1BUS A;  3KY9 A;  2NU3 I;  1SGE I;  4A24 A;  5EX3 A;  2ENN A;  2NU4 I;  1FYB A;  2GKT I;  1BMO A;  1N13 A;  1OMU A;  1PJU A;  3B4V C;  2JA1 A;  1FAR A;  5HQ8 A;  1OVO A;  2QQC A;  1TBO A;  1FAQ A;  1LR7 A;  1M8B A;  2W0T A;  1HDL A;  3E2I A;  1KBE A;  1U5K A;  2UZ3 A;  5CCM A;  2K9H A;  1CE3 A;  2KCX A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1FYBA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations