1FYBA

Solution structure of c1-t1, a two-domain proteinase inhibitor derived from the circular precursor protein na-propi from nicotiana alata
Total Genus 12
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
111
structure length
111
Chain Sequence
DRICTNCCAGTKGCKYFSDDGTFVCEGESDPRNPKACTLNCDPRIAYGVCPRSEEKKNDRICTNCCAGTKGCKYFSDDGTFVCEGESDPRNPKACPRNCDPRIAYGICPLA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase inhibitor
molecule keywords PROTEINASE INHIBITOR
publication title The solution structure of C1-T1, a two-domain proteinase inhibitor derived from a circular precursor protein from Nicotiana alata.
pubmed doi rcsb
source organism Nicotiana alata
total genus 12
structure length 111
sequence length 111
ec nomenclature
pdb deposition date 2000-09-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02428 Prot_inhib_II Potato type II proteinase inhibitor family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.30 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 1fybA02
3.30.60.30 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 1fybA01
2ERWA 1PPFI 2V53A 1H0ZA 2ARPF 2SGQI 1PCEA 2OVOA 1FYBA 1BMOA 1SGRI 4OVOA 1Z7KB 1CT4I 2JXDA 3QTLD 2WCYA 2SGFI 1R0RI 1NUBA 5DAEA 2JYYA 1CT2I 1HJAI 3TJQA 1PJUA 1UVGA 3SEKC 4HGUA 1TGSI 2B0UC 1M8CA 2NU0I 1OYVI 1LR8A 1YU6C 3B4VC 1KMAA 2JZMA 1SGDI 1OMTA 1IW4A 2GKRI 1IY6A 1LR9A 2KMRA 2XRCA 1TBQR 3OVOA 2SGPI 3SGQI 1SGQI 2F3CI 2N52A 1CSOI 1MT1A 5JHWC 2BUSA 2SGDI 1SGEI 1N13A 2KMQA 1OMUA 1AN1I 2GKVA 1Y1CA 1CE3A 1SGPI 1CGJI 1DS2I 1UUCA 1IY5A 1SGNI 1YTPA 1HDLA 1UVFA 2NU2I 1SGYI 2GKTI 2KMOA 1OVOA 2LEOA 2KMPA 2N71A 3SGBI 2P6AC 1DS3I 4GI3C 2KCXA 2M5XA 1CHOI 1TURA 2QQCA 1TBRR 2NU3I 1Y1BA 4SGBI 2N17A 1BUSA 2NU1I 1M8BA 1TIHA 1HPTA 2NU4I 2SGEI 1CT0I 1LR7A 1CGII 1TUSA 3HH2C 2QQDA
chains in the Genus database with same CATH superfamily
2DB6A 1U5KA 3QWPA 1PTQA 2ERWA 1PPFI 2V53A 1H0ZA 1NXUA 2ARPF 4E1RA 5FUYA 1WGCA 9WGAA 2SGQI 1WGTA 2X52A 2GVIA 4UXIA 2GIVA 1MJ9A 4DNCA 2QQ0A 1PCEA 2OVOA 5CCLA 4E1PA 3VE5A 2CJSC 1FYBA 3UEYA 1BMOA 1SGRI 2E73A 4FKDA 1MJBA 1Z7KB 4OVOA 2L7XA 3RU0A 1CT4I 2JXDA 2V1CC 3QTLD 2OD1A 2WCYA 1X4SA 2SGFI 1XX6A 1R0RI 1NUBA 3OXGA 5DAEA 3TO6A 1Q9BA 2JW6A 2JYYA 1CT2I 1HJAI 2ELIA 3TJQA 4A24A 1PJUA 2CWGA 1V1HA 5J8CA 1UVGA 3SEKC 2ENZA 1K7TA 2A20A 1MJAA 4HGUA 1ULMA 3VDPA 2PQ8A 2W0TA 5E3QA 1TGSI 2B0UC 1M8CA 2NU0I 1OYVI 1LR8A 1YU6C 2J9RA 2YUUA 3B4VC 3R5AA 1KMAA 5EX3A 1W3SA 2JZMA 3TO9A 1SGDI 5HI7A 3TOAA 1OMTA 1IW4A 1K7UA 2LUYA 2ODDA 3UEJA 1KBFA 1R79A 3E2IA 2GKRI 1IY6A 1LR9A 2RC4A 2KMRA 1XBTA 2RIJA 1PTRA 2B8TA 4UXHA 2QQEA 1WTJA 2XRCA 2OU2A 2UVOA 1TBQR 3BJIA 3OVOA 1RFHA 1TOTA 2SGPI 3SGQI 4AMLA 1SGQI 1K7VA 2F3CI 2N52A 2UZ3A 4UXJA 1FY7A 1CSOI 1MT1A 4B6DA 7WGAA 1Z2IA 1TBNA 3VDUA 2ROWA 1UHAA 5J8FA 1FAQA 5JHWC 2BUSA 2DIPA 3FSXA 3OL0A 2SGDI 1SGEI 2YQPA 1N13A 2N1AB 4WP4A 4MPIA 2KMQA 2Y0MA 1P9ZA 2L8EA 2QPOA 1TBOA 5FUVA 1OMUA 1AN1I 2GKVA 2WVJA 1Y1CA 2CWHA 1CE3A 3FSYA 2ORVA 1WKXA 1SGPI 1CGJI 1DS2I 1UUCA 3CXLA 4L9MA 1IY5A 1SGNI 1YTPA 3MEKA 1VDDA 3OXLA 3KY9A 3R5BA 4JCVE 1HDLA 2CWFA 1W4RA 1UVFA 5EX0A 2NU2I 3D00A 1ULKA 1FARA 1SGYI 2ENNA 2GKTI 3GOXA 2KMOA 3UGDA 1P9GA 1OVOA 2E5RA 2LEOA 2KMPA 2N71A 3SGBI 2P6AC 1DS3I 1Y8FA 2DKVA 2WGCA 4GI3C 1HEVA 1S20A 3PDNA 3OXFA 2KCXA 2M5XA 1CHOI 1TURA 2OZUA 2QQCA 3R5CA 1TBRR 2NU3I 3E59A 3R5DA 2FNFX 1Y1BA 3TOBA 1X74A 2K9HA 1XA6A 2X3TA 4SGBI 2N17A 2J87A 2V1CA 1BUSA 2NU1I 2LB7A 1M8BA 1TIHA 3UOEA 1ULNA 2ORWA 1HPTA 2NU4I 2VRWB 5FUWA 3UGLA 1V1IA 3UGIA 2SGEI 5FUXA 1CT0I 5E3RA 2JA1A 3QAHA 5CCMA 1LR7A 5HQ8A 1KBEA 1CGII 3TO7A 1TUSA 3HH2C 5E3PA 3FC3A 3UFFA 2QQDA
chains in the Genus database with same CATH topology
2DB6A 1U5KA 3QWPA 1PTQA 2ERWA 1PPFI 2V53A 1H0ZA 2ARPF 4E1RA 5FUYA 2SGQI 2GVIA 4UXIA 2QQ0A 1PCEA 2OVOA 5CCLA 4E1PA 3VE5A 2CJSC 1FYBA 3UEYA 1BMOA 1SGRI 2E73A 4FKDA 4OVOA 1Z7KB 2L7XA 3RU0A 1CT4I 2JXDA 2V1CC 3QTLD 2OD1A 2WCYA 1X4SA 2SGFI 1XX6A 1R0RI 1NUBA 3OXGA 5DAEA 2JW6A 2JYYA 1CT2I 1HJAI 2ELIA 3TJQA 4A24A 1PJUA 1V1HA 1UVGA 3SEKC 2ENZA 2A20A 3VDPA 4HGUA 2W0TA 1TGSI 2B0UC 1M8CA 2NU0I 1OYVI 1LR8A 1YU6C 2J9RA 2YUUA 3B4VC 1KMAA 5EX3A 1W3SA 2JZMA 1SGDI 5HI7A 1OMTA 1IW4A 2LUYA 2ODDA 3UEJA 1KBFA 1R79A 3E2IA 2GKRI 1IY6A 1LR9A 2KMRA 1XBTA 1PTRA 2B8TA 4UXHA 2QQEA 2XRCA 1TBQR 3BJIA 3OVOA 1RFHA 1TOTA 2SGPI 3SGQI 1SGQI 2F3CI 2N52A 2UZ3A 4B6DA 4UXJA 1CSOI 1MT1A 3VDUA 1TBNA 2ROWA 1FAQA 5JHWC 2BUSA 2DIPA 3OL0A 2SGDI 1SGEI 2YQPA 1N13A 2N1AB 2KMQA 2L8EA 2QPOA 1TBOA 5FUVA 1OMUA 1AN1I 2GKVA 2WVJA 1Y1CA 1CE3A 2ORVA 1SGPI 1CGJI 1DS2I 1UUCA 3CXLA 4L9MA 1IY5A 1SGNI 1YTPA 3MEKA 1VDDA 3OXLA 3KY9A 4JCVE 1HDLA 5EX0A 1W4RA 1UVFA 2NU2I 3D00A 1FARA 1SGYI 2ENNA 2GKTI 3GOXA 2KMOA 3UGDA 1OVOA 2E5RA 2LEOA 2KMPA 2N71A 3SGBI 2P6AC 1DS3I 1Y8FA 4GI3C 3PDNA 3OXFA 2KCXA 2M5XA 1CHOI 1TURA 2QQCA 1TBRR 2NU3I 3E59A 2FNFX 1Y1BA 1X74A 2K9HA 1XA6A 4SGBI 2N17A 2J87A 2V1CA 1BUSA 2NU1I 1M8BA 1TIHA 2ORWA 1HPTA 2NU4I 2VRWB 5FUWA 3UGLA 1V1IA 3UGIA 2SGEI 5FUXA 1CT0I 2JA1A 5CCMA 1LR7A 5HQ8A 1KBEA 1CGII 1TUSA 3HH2C 3FC3A 3UFFA 2QQDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ERW A;  1PPF I;  2V53 A;  1H0Z A;  2ARP F;  2SGQ I;  1PCE A;  2OVO A;  1FYB A;  1BMO A;  1SGR I;  4OVO A;  1Z7K B;  1CT4 I;  2JXD A;  3QTL D;  2WCY A;  2SGF I;  1R0R I;  1NUB A;  5DAE A;  2JYY A;  1CT2 I;  1HJA I;  3TJQ A;  1PJU A;  1UVG A;  3SEK C;  4HGU A;  1TGS I;  2B0U C;  1M8C A;  2NU0 I;  1OYV I;  1LR8 A;  1YU6 C;  3B4V C;  1KMA A;  2JZM A;  1SGD I;  1OMT A;  1IW4 A;  2GKR I;  1IY6 A;  1LR9 A;  2KMR A;  2XRC A;  1TBQ R;  3OVO A;  2SGP I;  3SGQ I;  1SGQ I;  2F3C I;  2N52 A;  1CSO I;  1MT1 A;  5JHW C;  2BUS A;  2SGD I;  1SGE I;  1N13 A;  2KMQ A;  1OMU A;  1AN1 I;  2GKV A;  1Y1C A;  1CE3 A;  1SGP I;  1CGJ I;  1DS2 I;  1UUC A;  1IY5 A;  1SGN I;  1YTP A;  1HDL A;  1UVF A;  2NU2 I;  1SGY I;  2GKT I;  2KMO A;  1OVO A;  2LEO A;  2KMP A;  2N71 A;  3SGB I;  2P6A C;  1DS3 I;  4GI3 C;  2KCX A;  2M5X A;  1CHO I;  1TUR A;  2QQC A;  1TBR R;  2NU3 I;  1Y1B A;  4SGB I;  2N17 A;  1BUS A;  2NU1 I;  1M8B A;  1TIH A;  1HPT A;  2NU4 I;  2SGE I;  1CT0 I;  1LR7 A;  1CGI I;  1TUS A;  3HH2 C;  2QQD A; 
#chains in the Genus database with same CATH topology
 2DB6 A;  1U5K A;  3QWP A;  1PTQ A;  2ERW A;  1PPF I;  2V53 A;  1H0Z A;  1NXU A;  2ARP F;  4E1R A;  5FUY A;  1WGC A;  9WGA A;  2SGQ I;  1WGT A;  2X52 A;  2GVI A;  4UXI A;  2GIV A;  1MJ9 A;  4DNC A;  2QQ0 A;  1PCE A;  2OVO A;  5CCL A;  4E1P A;  3VE5 A;  2CJS C;  1FYB A;  3UEY A;  1BMO A;  1SGR I;  2E73 A;  4FKD A;  1MJB A;  1Z7K B;  4OVO A;  2L7X A;  3RU0 A;  1CT4 I;  2JXD A;  2V1C C;  3QTL D;  2OD1 A;  2WCY A;  1X4S A;  2SGF I;  1XX6 A;  1R0R I;  1NUB A;  3OXG A;  5DAE A;  3TO6 A;  1Q9B A;  2JW6 A;  2JYY A;  1CT2 I;  1HJA I;  2ELI A;  3TJQ A;  4A24 A;  1PJU A;  2CWG A;  1V1H A;  5J8C A;  1UVG A;  3SEK C;  2ENZ A;  1K7T A;  2A20 A;  1MJA A;  4HGU A;  1ULM A;  3VDP A;  2PQ8 A;  2W0T A;  5E3Q A;  1TGS I;  2B0U C;  1M8C A;  2NU0 I;  1OYV I;  1LR8 A;  1YU6 C;  2J9R A;  2YUU A;  3B4V C;  3R5A A;  1KMA A;  5EX3 A;  1W3S A;  2JZM A;  3TO9 A;  1SGD I;  5HI7 A;  3TOA A;  1OMT A;  1IW4 A;  1K7U A;  2LUY A;  2ODD A;  3UEJ A;  1KBF A;  1R79 A;  3E2I A;  2GKR I;  1IY6 A;  1LR9 A;  2RC4 A;  2KMR A;  1XBT A;  2RIJ A;  1PTR A;  2B8T A;  4UXH A;  2QQE A;  1WTJ A;  2XRC A;  2OU2 A;  2UVO A;  1TBQ R;  3BJI A;  3OVO A;  1RFH A;  1TOT A;  2SGP I;  3SGQ I;  4AML A;  1SGQ I;  1K7V A;  2F3C I;  2N52 A;  2UZ3 A;  4UXJ A;  1FY7 A;  1CSO I;  1MT1 A;  4B6D A;  7WGA A;  1Z2I A;  1TBN A;  3VDU A;  2ROW A;  1UHA A;  5J8F A;  1FAQ A;  5JHW C;  2BUS A;  2DIP A;  3FSX A;  3OL0 A;  2SGD I;  1SGE I;  2YQP A;  1N13 A;  2N1A B;  4WP4 A;  4MPI A;  2KMQ A;  2Y0M A;  1P9Z A;  2L8E A;  2QPO A;  1TBO A;  5FUV A;  1OMU A;  1AN1 I;  2GKV A;  2WVJ A;  1Y1C A;  2CWH A;  1CE3 A;  3FSY A;  2ORV A;  1WKX A;  1SGP I;  1CGJ I;  1DS2 I;  1UUC A;  3CXL A;  4L9M A;  1IY5 A;  1SGN I;  1YTP A;  3MEK A;  1VDD A;  3OXL A;  3KY9 A;  3R5B A;  4JCV E;  1HDL A;  2CWF A;  1W4R A;  1UVF A;  5EX0 A;  2NU2 I;  3D00 A;  1ULK A;  1FAR A;  1SGY I;  2ENN A;  2GKT I;  3GOX A;  2KMO A;  3UGD A;  1P9G A;  1OVO A;  2E5R A;  2LEO A;  2KMP A;  2N71 A;  3SGB I;  2P6A C;  1DS3 I;  1Y8F A;  2DKV A;  2WGC A;  4GI3 C;  1HEV A;  1S20 A;  3PDN A;  3OXF A;  2KCX A;  2M5X A;  1CHO I;  1TUR A;  2OZU A;  2QQC A;  3R5C A;  1TBR R;  2NU3 I;  3E59 A;  3R5D A;  2FNF X;  1Y1B A;  3TOB A;  1X74 A;  2K9H A;  1XA6 A;  2X3T A;  4SGB I;  2N17 A;  2J87 A;  2V1C A;  1BUS A;  2NU1 I;  2LB7 A;  1M8B A;  1TIH A;  3UOE A;  1ULN A;  2ORW A;  1HPT A;  2NU4 I;  2VRW B;  5FUW A;  3UGL A;  1V1I A;  3UGI A;  2SGE I;  5FUX A;  1CT0 I;  5E3R A;  2JA1 A;  3QAH A;  5CCM A;  1LR7 A;  5HQ8 A;  1KBE A;  1CGI I;  3TO7 A;  1TUS A;  3HH2 C;  5E3P A;  3FC3 A;  3UFF A;  2QQD A; 
#chains in the Genus database with same CATH homology
 2DB6 A;  1U5K A;  3QWP A;  1PTQ A;  2ERW A;  1PPF I;  2V53 A;  1H0Z A;  2ARP F;  4E1R A;  5FUY A;  2SGQ I;  2GVI A;  4UXI A;  2QQ0 A;  1PCE A;  2OVO A;  5CCL A;  4E1P A;  3VE5 A;  2CJS C;  1FYB A;  3UEY A;  1BMO A;  1SGR I;  2E73 A;  4FKD A;  4OVO A;  1Z7K B;  2L7X A;  3RU0 A;  1CT4 I;  2JXD A;  2V1C C;  3QTL D;  2OD1 A;  2WCY A;  1X4S A;  2SGF I;  1XX6 A;  1R0R I;  1NUB A;  3OXG A;  5DAE A;  2JW6 A;  2JYY A;  1CT2 I;  1HJA I;  2ELI A;  3TJQ A;  4A24 A;  1PJU A;  1V1H A;  1UVG A;  3SEK C;  2ENZ A;  2A20 A;  3VDP A;  4HGU A;  2W0T A;  1TGS I;  2B0U C;  1M8C A;  2NU0 I;  1OYV I;  1LR8 A;  1YU6 C;  2J9R A;  2YUU A;  3B4V C;  1KMA A;  5EX3 A;  1W3S A;  2JZM A;  1SGD I;  5HI7 A;  1OMT A;  1IW4 A;  2LUY A;  2ODD A;  3UEJ A;  1KBF A;  1R79 A;  3E2I A;  2GKR I;  1IY6 A;  1LR9 A;  2KMR A;  1XBT A;  1PTR A;  2B8T A;  4UXH A;  2QQE A;  2XRC A;  1TBQ R;  3BJI A;  3OVO A;  1RFH A;  1TOT A;  2SGP I;  3SGQ I;  1SGQ I;  2F3C I;  2N52 A;  2UZ3 A;  4B6D A;  4UXJ A;  1CSO I;  1MT1 A;  3VDU A;  1TBN A;  2ROW A;  1FAQ A;  5JHW C;  2BUS A;  2DIP A;  3OL0 A;  2SGD I;  1SGE I;  2YQP A;  1N13 A;  2N1A B;  2KMQ A;  2L8E A;  2QPO A;  1TBO A;  5FUV A;  1OMU A;  1AN1 I;  2GKV A;  2WVJ A;  1Y1C A;  1CE3 A;  2ORV A;  1SGP I;  1CGJ I;  1DS2 I;  1UUC A;  3CXL A;  4L9M A;  1IY5 A;  1SGN I;  1YTP A;  3MEK A;  1VDD A;  3OXL A;  3KY9 A;  4JCV E;  1HDL A;  5EX0 A;  1W4R A;  1UVF A;  2NU2 I;  3D00 A;  1FAR A;  1SGY I;  2ENN A;  2GKT I;  3GOX A;  2KMO A;  3UGD A;  1OVO A;  2E5R A;  2LEO A;  2KMP A;  2N71 A;  3SGB I;  2P6A C;  1DS3 I;  1Y8F A;  4GI3 C;  3PDN A;  3OXF A;  2KCX A;  2M5X A;  1CHO I;  1TUR A;  2QQC A;  1TBR R;  2NU3 I;  3E59 A;  2FNF X;  1Y1B A;  1X74 A;  2K9H A;  1XA6 A;  4SGB I;  2N17 A;  2J87 A;  2V1C A;  1BUS A;  2NU1 I;  1M8B A;  1TIH A;  2ORW A;  1HPT A;  2NU4 I;  2VRW B;  5FUW A;  3UGL A;  1V1I A;  3UGI A;  2SGE I;  5FUX A;  1CT0 I;  2JA1 A;  5CCM A;  1LR7 A;  5HQ8 A;  1KBE A;  1CGI I;  1TUS A;  3HH2 C;  3FC3 A;  3UFF A;  2QQD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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