2JW6A

Solution structure of the deaf1 mynd domain
Total Genus 11

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
42
structure length
42
Chain Sequence
SCVNCGREAMSECTGCHKVNYCSTFCQRKDWKDHQHICGQSA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
molecule tags Transcription
source organism Homo sapiens
publication title Retraction notice to "Structure and functional analysis of the MYND domain" [J. Mol. Biol. (2006) 358, 498-508].
pubmed rcsb
molecule keywords Deformed epidermal autoregulatory factor 1 homolog
total genus 11
structure length 42
sequence length 42
ec nomenclature
pdb deposition date 2007-10-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01753 zf-MYND MYND finger
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.180 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 2jw6A00
5HQ8A 3OXFA 3OXGA 3PDNA 4A24A 2ODDA 3RU0A 3OXLA 3QWPA 5CCMA 2JW6A 5EX0A 5EX3A 5HI7A 2OD1A 5CCLA 3MEKA
chains in the Genus database with same CATH superfamily
2ORVA 2CWGA 2V1CA 2ELIA 1P9ZA 2B0UC 1FYBA 2XRCA 2GKRI 1ULNA 1Y8FA 3UGDA 1KBEA 1TBOA 2B8TA 3SGBI 2SGPI 2NU4I 1HPTA 2X3TA 2KMOA 2L8EA 1MJAA 1SGDI 1XBTA 2M5XA 2NU1I 3TJQA 1BMOA 1AN1I 1TBQR 2GVIA 3R5AA 1W4RA 5J8CA 1UUCA 3OXGA 2J9RA 2ODDA 3TO9A 1V1HA 1R79A 1ULMA 1OYVI 2LUYA 2OVOA 2NU0I 4L9MA 1OMTA 4E1PA 3QTLD 2UZ3A 2CJSC 1CT2I 1HEVA 1N13A 1UHAA 4DNCA 1NXUA 2X52A 3UEYA 5E3QA 3UEJA 1NUBA 1DS3I 2GKTI 1LR9A 3E59A 1S20A 3QAHA 1FAQA 2SGEI 1SGNI 4OVOA 2RIJA 3MEKA 3FC3A 1H0ZA 5JHWC 3FSXA 1WTJA 1IW4A 1IY5A 2BUSA 1CT4I 2RC4A 3OVOA 1KBFA 2NU2I 1PJUA 1WGTA 2CWFA 1TBNA 3SEKC 1Z7KB 1R0RI 4E1RA 1Y1BA 2JZMA 1LR7A 2KCXA 2NU3I 3R5DA 1P9GA 5CCMA 7WGAA 5DAEA 2KMPA 1X4SA 1CGJI 4WP4A 3TOAA 5CCLA 3UFFA 2ERWA 1OVOA 1TBRR 2CWHA 1WKXA 1YU6C 3FSYA 2Y0MA 5EX0A 2DB6A 2YQPA 1TUSA 3R5CA 2YUUA 1LR8A 2A20A 2N52A 2PQ8A 3BJIA 4UXIA 5HQ8A 2KMQA 3R5BA 1XA6A 1IY6A 3QWPA 2VRWB 1HDLA 4HGUA 2K9HA 2V1CC 3D00A 2GKVA 2QQDA 1MJBA 1SGQI 1K7UA 2SGDI 1TOTA 2WGCA 2WCYA 5FUYA 3TO7A 1DS2I 2LEOA 2N1AB 2OD1A 1TGSI 1CSOI 1SGEI 1XX6A 2JXDA 2ORWA 2SGQI 3PDNA 4UXHA 1K7TA 2L7XA 1U5KA 2UVOA 3OXLA 1BUSA 3UGLA 5FUVA 4GI3C 2DIPA 2OZUA 2W0TA 2ARPF 4FKDA 3OL0A 1W3SA 2V53A 1K7VA 1RFHA 1VDDA 1V1IA 2JYYA 2ROWA 1KMAA 1Y1CA 4AMLA 1YTPA 2E73A 2SGFI 2QQ0A 5E3PA 3B4VC 2LB7A 3SGQI 4B6DA 1SGPI 4UXJA 1SGRI 2QQEA 5FUWA 3UGIA 4A24A 2GIVA 1HJAI 1TURA 2OU2A 4JCVE 1SGYI 1M8CA 3RU0A 1PCEA 3GOXA 1MT1A 2JA1A 3KY9A 2DKVA 1M8BA 3TOBA 5J8FA 1WGCA 3CXLA 1FY7A 5FUXA 2QQCA 1ULKA 1FARA 1UVGA 2E5RA 2QPOA 4MPIA 1CT0I 5EX3A 3TO6A 1CGII 2ENNA 5E3RA 3UOEA 1PTRA 2FNFX 1MJ9A 2WVJA 1UVFA 1CE3A 1OMUA 1Q9BA 4SGBI 1X74A 5HI7A 1PTQA 3VDPA 2N71A 3OXFA 3VE5A 2F3CI 2N17A 1PPFI 2JW6A 2P6AC 3E2IA 1TIHA 2KMRA 1Z2IA 3HH2C 2ENZA 1CHOI 2J87A 3VDUA 9WGAA
chains in the Genus database with same CATH topology
2ORVA 2V1CA 2ELIA 1FYBA 2B0UC 2XRCA 2GKRI 1Y8FA 3UGDA 1KBEA 1TBOA 2B8TA 3SGBI 2SGPI 2NU4I 1HPTA 2KMOA 2L8EA 1SGDI 1XBTA 2M5XA 2NU1I 3TJQA 1BMOA 1AN1I 1TBQR 2GVIA 1W4RA 1UUCA 3OXGA 2J9RA 2ODDA 1V1HA 1R79A 1OYVI 2LUYA 2OVOA 2NU0I 4L9MA 1OMTA 4E1PA 3QTLD 2UZ3A 2CJSC 1CT2I 1N13A 3UEYA 3UEJA 1NUBA 1DS3I 2GKTI 1LR9A 3E59A 1FAQA 2SGEI 1SGNI 4OVOA 1H0ZA 3MEKA 3FC3A 5JHWC 1IW4A 1IY5A 2BUSA 1CT4I 3OVOA 1KBFA 2NU2I 1PJUA 4E1RA 1TBNA 3SEKC 1Z7KB 1R0RI 1Y1BA 2JZMA 1LR7A 2KCXA 2NU3I 5CCMA 5DAEA 2KMPA 1X4SA 1CGJI 5CCLA 3UFFA 2ERWA 1OVOA 1TBRR 1YU6C 5EX0A 2DB6A 2YQPA 1TUSA 2YUUA 1LR8A 2A20A 2N52A 3BJIA 4UXIA 5HQ8A 2KMQA 1XA6A 1IY6A 3QWPA 2VRWB 1HDLA 4HGUA 2K9HA 2V1CC 3D00A 2GKVA 2QQDA 1SGQI 2WCYA 2SGDI 1TOTA 5FUYA 1DS2I 2LEOA 2N1AB 2OD1A 1SGEI 1CSOI 1TGSI 1XX6A 2JXDA 2ORWA 2SGQI 3PDNA 4UXHA 3OXLA 2L7XA 1U5KA 1BUSA 3UGLA 5FUVA 4GI3C 2DIPA 2W0TA 2ARPF 4FKDA 3OL0A 1W3SA 2V53A 1RFHA 1VDDA 1V1IA 2JYYA 2ROWA 1KMAA 1Y1CA 1YTPA 2E73A 2SGFI 2QQ0A 3SGQI 3B4VC 4B6DA 1SGPI 4UXJA 1SGRI 2QQEA 5FUWA 3UGIA 4A24A 1HJAI 1TURA 4JCVE 3RU0A 1SGYI 1M8CA 1PCEA 3GOXA 1MT1A 2JA1A 3KY9A 1M8BA 5FUXA 3CXLA 2QQCA 1FARA 1UVGA 2E5RA 2QPOA 5EX3A 1CT0I 1CGII 2ENNA 1PTRA 2FNFX 2WVJA 1UVFA 1CE3A 1OMUA 4SGBI 1X74A 5HI7A 1PTQA 3VDPA 2N71A 3OXFA 3VE5A 2F3CI 2N17A 1PPFI 2JW6A 2P6AC 3E2IA 1TIHA 2KMRA 3VDUA 3HH2C 2ENZA 1CHOI 2J87A
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 5HQ8 A;  3OXF A;  3OXG A;  3PDN A;  4A24 A;  2ODD A;  3RU0 A;  3OXL A;  3QWP A;  5CCM A;  2JW6 A;  5EX0 A;  5EX3 A;  5HI7 A;  2OD1 A;  5CCL A;  3MEK A; 
#chains in the Genus database with same CATH topology
 2ORV A;  2CWG A;  2V1C A;  2ELI A;  1P9Z A;  2B0U C;  1FYB A;  2XRC A;  2GKR I;  1ULN A;  1Y8F A;  3UGD A;  1KBE A;  1TBO A;  2B8T A;  3SGB I;  2SGP I;  2NU4 I;  1HPT A;  2X3T A;  2KMO A;  2L8E A;  1MJA A;  1SGD I;  1XBT A;  2M5X A;  2NU1 I;  3TJQ A;  1BMO A;  1AN1 I;  1TBQ R;  2GVI A;  3R5A A;  1W4R A;  5J8C A;  1UUC A;  3OXG A;  2J9R A;  2ODD A;  3TO9 A;  1V1H A;  1R79 A;  1ULM A;  1OYV I;  2LUY A;  2OVO A;  2NU0 I;  4L9M A;  1OMT A;  4E1P A;  3QTL D;  2UZ3 A;  2CJS C;  1CT2 I;  1HEV A;  1N13 A;  1UHA A;  4DNC A;  1NXU A;  2X52 A;  3UEY A;  5E3Q A;  3UEJ A;  1NUB A;  1DS3 I;  2GKT I;  1LR9 A;  3E59 A;  1S20 A;  3QAH A;  1FAQ A;  2SGE I;  1SGN I;  4OVO A;  2RIJ A;  3MEK A;  3FC3 A;  1H0Z A;  5JHW C;  3FSX A;  1WTJ A;  1IW4 A;  1IY5 A;  2BUS A;  1CT4 I;  2RC4 A;  3OVO A;  1KBF A;  2NU2 I;  1PJU A;  1WGT A;  2CWF A;  1TBN A;  3SEK C;  1Z7K B;  1R0R I;  4E1R A;  1Y1B A;  2JZM A;  1LR7 A;  2KCX A;  2NU3 I;  3R5D A;  1P9G A;  5CCM A;  7WGA A;  5DAE A;  2KMP A;  1X4S A;  1CGJ I;  4WP4 A;  3TOA A;  5CCL A;  3UFF A;  2ERW A;  1OVO A;  1TBR R;  2CWH A;  1WKX A;  1YU6 C;  3FSY A;  2Y0M A;  5EX0 A;  2DB6 A;  2YQP A;  1TUS A;  3R5C A;  2YUU A;  1LR8 A;  2A20 A;  2N52 A;  2PQ8 A;  3BJI A;  4UXI A;  5HQ8 A;  2KMQ A;  3R5B A;  1XA6 A;  1IY6 A;  3QWP A;  2VRW B;  1HDL A;  4HGU A;  2K9H A;  2V1C C;  3D00 A;  2GKV A;  2QQD A;  1MJB A;  1SGQ I;  1K7U A;  2SGD I;  1TOT A;  2WGC A;  2WCY A;  5FUY A;  3TO7 A;  1DS2 I;  2LEO A;  2N1A B;  2OD1 A;  1TGS I;  1CSO I;  1SGE I;  1XX6 A;  2JXD A;  2ORW A;  2SGQ I;  3PDN A;  4UXH A;  1K7T A;  2L7X A;  1U5K A;  2UVO A;  3OXL A;  1BUS A;  3UGL A;  5FUV A;  4GI3 C;  2DIP A;  2OZU A;  2W0T A;  2ARP F;  4FKD A;  3OL0 A;  1W3S A;  2V53 A;  1K7V A;  1RFH A;  1VDD A;  1V1I A;  2JYY A;  2ROW A;  1KMA A;  1Y1C A;  4AML A;  1YTP A;  2E73 A;  2SGF I;  2QQ0 A;  5E3P A;  3B4V C;  2LB7 A;  3SGQ I;  4B6D A;  1SGP I;  4UXJ A;  1SGR I;  2QQE A;  5FUW A;  3UGI A;  4A24 A;  2GIV A;  1HJA I;  1TUR A;  2OU2 A;  4JCV E;  1SGY I;  1M8C A;  3RU0 A;  1PCE A;  3GOX A;  1MT1 A;  2JA1 A;  3KY9 A;  2DKV A;  1M8B A;  3TOB A;  5J8F A;  1WGC A;  3CXL A;  1FY7 A;  5FUX A;  2QQC A;  1ULK A;  1FAR A;  1UVG A;  2E5R A;  2QPO A;  4MPI A;  1CT0 I;  5EX3 A;  3TO6 A;  1CGI I;  2ENN A;  5E3R A;  3UOE A;  1PTR A;  2FNF X;  1MJ9 A;  2WVJ A;  1UVF A;  1CE3 A;  1OMU A;  1Q9B A;  4SGB I;  1X74 A;  5HI7 A;  1PTQ A;  3VDP A;  2N71 A;  3OXF A;  3VE5 A;  2F3C I;  2N17 A;  1PPF I;  2JW6 A;  2P6A C;  3E2I A;  1TIH A;  2KMR A;  1Z2I A;  3HH2 C;  2ENZ A;  1CHO I;  2J87 A;  3VDU A;  9WGA A; 
#chains in the Genus database with same CATH homology
 2ORV A;  2V1C A;  2ELI A;  1FYB A;  2B0U C;  2XRC A;  2GKR I;  1Y8F A;  3UGD A;  1KBE A;  1TBO A;  2B8T A;  3SGB I;  2SGP I;  2NU4 I;  1HPT A;  2KMO A;  2L8E A;  1SGD I;  1XBT A;  2M5X A;  2NU1 I;  3TJQ A;  1BMO A;  1AN1 I;  1TBQ R;  2GVI A;  1W4R A;  1UUC A;  3OXG A;  2J9R A;  2ODD A;  1V1H A;  1R79 A;  1OYV I;  2LUY A;  2OVO A;  2NU0 I;  4L9M A;  1OMT A;  4E1P A;  3QTL D;  2UZ3 A;  2CJS C;  1CT2 I;  1N13 A;  3UEY A;  3UEJ A;  1NUB A;  1DS3 I;  2GKT I;  1LR9 A;  3E59 A;  1FAQ A;  2SGE I;  1SGN I;  4OVO A;  1H0Z A;  3MEK A;  3FC3 A;  5JHW C;  1IW4 A;  1IY5 A;  2BUS A;  1CT4 I;  3OVO A;  1KBF A;  2NU2 I;  1PJU A;  4E1R A;  1TBN A;  3SEK C;  1Z7K B;  1R0R I;  1Y1B A;  2JZM A;  1LR7 A;  2KCX A;  2NU3 I;  5CCM A;  5DAE A;  2KMP A;  1X4S A;  1CGJ I;  5CCL A;  3UFF A;  2ERW A;  1OVO A;  1TBR R;  1YU6 C;  5EX0 A;  2DB6 A;  2YQP A;  1TUS A;  2YUU A;  1LR8 A;  2A20 A;  2N52 A;  3BJI A;  4UXI A;  5HQ8 A;  2KMQ A;  1XA6 A;  1IY6 A;  3QWP A;  2VRW B;  1HDL A;  4HGU A;  2K9H A;  2V1C C;  3D00 A;  2GKV A;  2QQD A;  1SGQ I;  2WCY A;  2SGD I;  1TOT A;  5FUY A;  1DS2 I;  2LEO A;  2N1A B;  2OD1 A;  1SGE I;  1CSO I;  1TGS I;  1XX6 A;  2JXD A;  2ORW A;  2SGQ I;  3PDN A;  4UXH A;  3OXL A;  2L7X A;  1U5K A;  1BUS A;  3UGL A;  5FUV A;  4GI3 C;  2DIP A;  2W0T A;  2ARP F;  4FKD A;  3OL0 A;  1W3S A;  2V53 A;  1RFH A;  1VDD A;  1V1I A;  2JYY A;  2ROW A;  1KMA A;  1Y1C A;  1YTP A;  2E73 A;  2SGF I;  2QQ0 A;  3SGQ I;  3B4V C;  4B6D A;  1SGP I;  4UXJ A;  1SGR I;  2QQE A;  5FUW A;  3UGI A;  4A24 A;  1HJA I;  1TUR A;  4JCV E;  3RU0 A;  1SGY I;  1M8C A;  1PCE A;  3GOX A;  1MT1 A;  2JA1 A;  3KY9 A;  1M8B A;  5FUX A;  3CXL A;  2QQC A;  1FAR A;  1UVG A;  2E5R A;  2QPO A;  5EX3 A;  1CT0 I;  1CGI I;  2ENN A;  1PTR A;  2FNF X;  2WVJ A;  1UVF A;  1CE3 A;  1OMU A;  4SGB I;  1X74 A;  5HI7 A;  1PTQ A;  3VDP A;  2N71 A;  3OXF A;  3VE5 A;  2F3C I;  2N17 A;  1PPF I;  2JW6 A;  2P6A C;  3E2I A;  1TIH A;  2KMR A;  3VDU A;  3HH2 C;  2ENZ A;  1CHO I;  2J87 A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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