The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
6
|
sequence length |
96
|
structure length |
96
|
Chain Sequence |
MGKNDNDALIMCMRCRKVKGIDSYSKTQWSKTFTFVRGRTVSVSDPKVICRTCQPKQHDSIWCTACQQTKGINEFSKAQRHVLDPRCQICVHSQRN
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structural analysis of Stc1 provides insights into the coupling of RNAi and chromatin modification.
pubmed doi rcsb |
| molecule keywords |
Meiotic chromosome segregation protein P8B7.28c
|
| molecule tags |
Dna binding protein
|
| source organism |
Schizosaccharomyces pombe
|
| total genus |
6
|
| structure length |
96
|
| sequence length |
96
|
| ec nomenclature | |
| pdb deposition date | 2012-06-22 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF12898 | Stc1 | Stc1 domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Wheat Germ Agglutinin (Isolectin 2); domain 1 | Wheat Germ Agglutinin (Isolectin 2); domain 1 | ||
| Alpha Beta | 2-Layer Sandwich | Wheat Germ Agglutinin (Isolectin 2); domain 1 | Wheat Germ Agglutinin (Isolectin 2); domain 1 |
#chains in the Genus database with same CATH superfamily 2LUY A; #chains in the Genus database with same CATH topology 3FSY A; 5E3P A; 3TO6 A; 2CWH A; 2SGQ I; 1DS3 I; 2ENN A; 2JYY A; 3TJQ A; 3RU0 A; 2N17 A; 2V53 A; 1TBN A; 1TOT A; 1WGC A; 3OL0 A; 2B8T A; 5DAE A; 1KMA A; 2Y0M A; 1UUC A; 1W3S A; 2QQE A; 1BUS A; 1SGR I; 3OVO A; 4E1R A; 1H0Z A; 2NU0 I; 2KMQ A; 5CCM A; 2X3T A; 4JCV E; 1V1I A; 4B6D A; 1XBT A; 2CWF A; 2GKT I; 2OVO A; 2L7X A; 1Z7K B; 2JA1 A; 2L8E A; 3HH2 C; 2OU2 A; 4OVO A; 9WGA A; 1SGP I; 1TBR R; 2ELI A; 2F3C I; 2KMO A; 2QQ0 A; 2VRW B; 2WVJ A; 1FYB A; 3R5D A; 1Y1C A; 5FUY A; 1FY7 A; 2A20 A; 1V1H A; 1SGY I; 3SGB I; 5FUX A; 3UEY A; 1CT0 I; 7WGA A; 2W0T A; 3TO7 A; 2J87 A; 2QQD A; 1IY5 A; 1WTJ A; 2YQP A; 3E2I A; 2ODD A; 2K9H A; 4DNC A; 3QTL D; 1TGS I; 3QWP A; 4WP4 A; 3GOX A; 1P9Z A; 1Y8F A; 3UFF A; 2WGC A; 1KBF A; 2LUY A; 2CJS C; 2ORV A; 2DIP A; 5E3Q A; 2QQC A; 1HPT A; 1PTQ A; 2GKR I; 2V1C C; 4MPI A; 1K7V A; 1OMU A; 3OXG A; 2V1C A; 1HJA I; 3PDN A; 5J8F A; 1ULK A; 1CT4 I; 1NUB A; 2E5R A; 1CGI I; 2QPO A; 1KBE A; 1LR7 A; 1MJ9 A; 4GI3 C; 3UOE A; 3UGI A; 1CGJ I; 2WCY A; 3D00 A; 3B4V C; 1UHA A; 3UGL A; 1K7T A; 1M8B A; 2NU3 I; 1CSO I; 1VDD A; 2KMP A; 3CXL A; 3R5A A; 1FAR A; 2BUS A; 3VDP A; 1MJB A; 1AN1 I; 2CWG A; 2FNF X; 2LEO A; 2P6A C; 3TOA A; 3OXF A; 2ORW A; 1Q9B A; 2J9R A; 3VE5 A; 2JZM A; 1LR8 A; 1YU6 C; 4FKD A; 5HI7 A; 1NXU A; 3SGQ I; 4SGB I; 2UVO A; 2X52 A; 5J8C A; 5EX3 A; 1CE3 A; 5HQ8 A; 1S20 A; 2SGE I; 2DKV A; 3FSX A; 4L9M A; 2RIJ A; 1N13 A; 2JW6 A; 2GIV A; 1M8C A; 1Z2I A; 2JXD A; 3BJI A; 1LR9 A; 2ROW A; 2KMR A; 1P9G A; 1SGE I; 2GKV A; 2LB7 A; 1CHO I; 1TUR A; 1YTP A; 3MEK A; 1SGQ I; 1X74 A; 5E3R A; 4A24 A; 4AML A; 1WGT A; 3R5C A; 2NU4 I; 3SEK C; 3R5B A; 5FUV A; 1WKX A; 2ENZ A; 2OD1 A; 1CT2 I; 1TBQ R; 2SGF I; 5EX0 A; 1UVG A; 1HEV A; 2N52 A; 3KY9 A; 2GVI A; 1SGN I; 2NU1 I; 1U5K A; 1OYV I; 5CCL A; 1IY6 A; 1UVF A; 2B0U C; 2YUU A; 1Y1B A; 2OZU A; 1PPF I; 1PTR A; 2SGD I; 3UGD A; 4E1P A; 1BMO A; 1XA6 A; 2RC4 A; 1ULM A; 2N1A B; 1RFH A; 2N71 A; 5FUW A; 3TOB A; 1SGD I; 2UZ3 A; 1K7U A; 1OVO A; 3TO9 A; 2DB6 A; 3QAH A; 1R0R I; 1DS2 I; 1TBO A; 2SGP I; 1PCE A; 1TUS A; 1X4S A; 1R79 A; 2E73 A; 2XRC A; 3FC3 A; 1HDL A; 1ULN A; 2PQ8 A; 1OMT A; 2M5X A; 4UXI A; 4UXJ A; 1FAQ A; 4HGU A; 5JHW C; 1XX6 A; 1TIH A; 2ARP F; 2KCX A; 1IW4 A; 3E59 A; 3VDU A; 1MT1 A; 3UEJ A; 2NU2 I; 1PJU A; 1W4R A; 3OXL A; 2ERW A; 1MJA A; 4UXH A; #chains in the Genus database with same CATH homology 2SGQ I; 1DS3 I; 2ENN A; 2JYY A; 3TJQ A; 3RU0 A; 2N17 A; 2V53 A; 1TBN A; 1TOT A; 5DAE A; 3OL0 A; 2B8T A; 1KMA A; 1UUC A; 1W3S A; 2QQE A; 1BUS A; 1SGR I; 3OVO A; 4E1R A; 1H0Z A; 2NU0 I; 2KMQ A; 5CCM A; 4JCV E; 1V1I A; 4B6D A; 1XBT A; 2GKT I; 2OVO A; 2L7X A; 1Z7K B; 2JA1 A; 2L8E A; 3HH2 C; 4OVO A; 1SGP I; 1TBR R; 2ELI A; 2F3C I; 2KMO A; 2QQ0 A; 2VRW B; 2WVJ A; 1FYB A; 1Y1C A; 5FUY A; 2A20 A; 1V1H A; 1SGY I; 3SGB I; 5FUX A; 3UEY A; 1CT0 I; 2W0T A; 2J87 A; 2QQD A; 1IY5 A; 2YQP A; 3E2I A; 2ODD A; 2K9H A; 3QTL D; 1TGS I; 3QWP A; 3GOX A; 1Y8F A; 3UFF A; 2LUY A; 2CJS C; 2ORV A; 2DIP A; 3OXL A; 2QQC A; 1HPT A; 1PTQ A; 2GKR I; 2V1C C; 1OMU A; 3OXG A; 2V1C A; 1HJA I; 3PDN A; 1CT4 I; 1NUB A; 2E5R A; 1CGI I; 2QPO A; 1KBE A; 1LR7 A; 4GI3 C; 3UGI A; 1CGJ I; 2WCY A; 3D00 A; 3B4V C; 3UGL A; 1M8B A; 2NU3 I; 1CSO I; 1VDD A; 2KMP A; 3CXL A; 3VDP A; 1FAR A; 2BUS A; 1KBF A; 1AN1 I; 2FNF X; 2LEO A; 2P6A C; 3OXF A; 2ORW A; 2J9R A; 3VE5 A; 2JZM A; 1LR8 A; 1YU6 C; 4FKD A; 5HI7 A; 3SGQ I; 4SGB I; 5EX3 A; 1CE3 A; 5HQ8 A; 2SGE I; 4L9M A; 1N13 A; 2JW6 A; 1M8C A; 2JXD A; 3BJI A; 1LR9 A; 2ROW A; 2KMR A; 1SGE I; 2GKV A; 1CHO I; 1TUR A; 1YTP A; 3MEK A; 1SGQ I; 1X74 A; 4A24 A; 2NU4 I; 3SEK C; 5FUV A; 2ENZ A; 2OD1 A; 1CT2 I; 1TBQ R; 2SGF I; 5EX0 A; 1UVG A; 2N52 A; 3KY9 A; 2GVI A; 1SGN I; 2NU1 I; 1U5K A; 1OYV I; 5CCL A; 1IY6 A; 1UVF A; 2B0U C; 2YUU A; 1Y1B A; 1PPF I; 1PTR A; 2SGD I; 3UGD A; 4E1P A; 1BMO A; 1XA6 A; 2N1A B; 1RFH A; 2N71 A; 5FUW A; 1SGD I; 2UZ3 A; 1OVO A; 2DB6 A; 1R0R I; 1DS2 I; 1TBO A; 2SGP I; 1PCE A; 1TUS A; 1X4S A; 1R79 A; 2E73 A; 2XRC A; 3FC3 A; 1HDL A; 4UXI A; 1OMT A; 2M5X A; 4UXJ A; 1FAQ A; 4HGU A; 5JHW C; 1TIH A; 2ARP F; 2KCX A; 1IW4 A; 3E59 A; 3VDU A; 1MT1 A; 3UEJ A; 2NU2 I; 1PJU A; 1XX6 A; 1W4R A; 2ERW A; 4UXH A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
