2OD1A

Solution structure of the mynd domain from human aml1-eto
Total Genus 6
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
6
sequence length
50
structure length
50
Chain Sequence
DSSESCWNCGRKASETCSGCNTARYCGSFCQHKDWEKHHHICGQTLQAQQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Metal binding protein
source organism Homo sapiens
publication title Structural basis for recognition of SMRT/N-CoR by the MYND domain and its contribution to AML1/ETO's activity.
pubmed doi rcsb
molecule keywords Protein CBFA2T1
total genus 6
structure length 50
sequence length 50
ec nomenclature
pdb deposition date 2006-12-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01753 zf-MYND MYND finger
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.180 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 2od1A00
5CCMA 2JW6A 3RU0A 5HI7A 3OXLA 5EX0A 5CCLA 3QWPA 5EX3A 3MEKA 3OXGA 4A24A 3OXFA 2ODDA 3PDNA 5HQ8A 2OD1A
chains in the Genus database with same CATH superfamily
5CCMA 1TIHA 2SGFI 3VDUA 2X52A 4E1PA 5CCLA 2GIVA 2PQ8A 3TO7A 2JZMA 2ORWA 3UEYA 1SGEI 4FKDA 1Q9BA 1XBTA 2L8EA 2N17A 1W3SA 2WGCA 3TOAA 1PJUA 1P9ZA 2JXDA 2X3TA 9WGAA 1X74A 2NU3I 2ENZA 1HEVA 3OXFA 2UZ3A 2DIPA 3HH2C 1TBNA 1CGJI 2QQCA 1W4RA 1NUBA 2NU4I 1V1IA 2GVIA 5EX3A 3MEKA 1TUSA 1UVGA 2QQEA 1MT1A 1V1HA 2KMRA 2DKVA 2ARPF 1UHAA 4E1RA 1TOTA 1Y8FA 1Z7KB 1Y1CA 2GKRI 3E59A 1P9GA 5E3QA 5FUYA 1SGRI 2B8TA 2P6AC 3FSXA 3QAHA 4WP4A 3CXLA 3TO9A 2ENNA 1YU6C 2JW6A 1WGTA 2DB6A 3RU0A 2Y0MA 1MJBA 3VDPA 1FAQA 1N13A 2OD1A 1KMAA 2B0UC 3UGLA 4UXJA 5HI7A 1XX6A 3OXLA 1MJ9A 1SGPI 1VDDA 2ORVA 3SGQI 2M5XA 3E2IA 2LUYA 1IY6A 1ULNA 2E5RA 1CGII 3TOBA 1K7VA 2VRWB 5E3PA 3TO6A 1HDLA 3SGBI 1TURA 1IY5A 2N52A 1CT4I 5FUWA 2SGEI 1R79A 1SGYI 3R5CA 2OU2A 4MPIA 5DAEA 3OVOA 1FYBA 4GI3C 1CHOI 4JCVE 1PPFI 2JYYA 3VE5A 3UGIA 2CWFA 4AMLA 1X4SA 1NXUA 1R0RI 1UVFA 1RFHA 3D00A 2BUSA 1Y1BA 1FY7A 2OZUA 2L7XA 2QPOA 2SGDI 2YUUA 2KCXA 3B4VC 3R5DA 5FUXA 3TJQA 1KBFA 1TBQR 2ELIA 1LR7A 2J87A 2KMOA 2XRCA 3UOEA 2V1CC 2WVJA 2NU2I 1TBRR 1U5KA 1CT0I 2N71A 3FSYA 4UXHA 5E3RA 1SGQI 3KY9A 1IW4A 1HPTA 1TGSI 1S20A 1DS2I 1CE3A 3UGDA 1K7TA 3R5BA 1SGNI 1WTJA 2RC4A 5J8CA 1LR9A 2GKVA 1Z2IA 1ULMA 1M8CA 4OVOA 1M8BA 4B6DA 1BMOA 3FC3A 3QTLD 2WCYA 2LEOA 3OXGA 7WGAA 1OMTA 1CT2I 2N1AB 1LR8A 2F3CI 2QQ0A 2JA1A 2NU0I 4HGUA 2W0TA 2J9RA 3R5AA 1SGDI 1OMUA 1PTQA 1WKXA 2K9HA 1K7UA 2LB7A 1WGCA 2V53A 1PTRA 2CWGA 4DNCA 2A20A 1FARA 2FNFX 5FUVA 4A24A 1PCEA 5JHWC 2QQDA 2E73A 1BUSA 5J8FA 1OVOA 1H0ZA 1OYVI 3OL0A 4SGBI 3QWPA 2V1CA 3UEJA 2KMQA 1XA6A 2ODDA 1YTPA 1ULKA 2RIJA 3PDNA 4UXIA 3GOXA 2UVOA 1KBEA 1UUCA 2NU1I 3UFFA 2CWHA 5EX0A 3SEKC 2ERWA 1HJAI 2SGPI 2OVOA 2ROWA 1CSOI 2SGQI 1TBOA 1MJAA 2CJSC 1DS3I 2YQPA 3BJIA 4L9MA 2GKTI 1AN1I 5HQ8A 2KMPA
chains in the Genus database with same CATH topology
5CCMA 1TIHA 2SGFI 3VDUA 4E1PA 5CCLA 2JZMA 2ORWA 3UEYA 1SGEI 4FKDA 1XBTA 2L8EA 2N17A 1W3SA 1PJUA 2JXDA 1X74A 2NU3I 2ENZA 3OXFA 2UZ3A 2DIPA 3HH2C 1TBNA 1CGJI 2QQCA 1W4RA 1NUBA 2NU4I 1V1IA 2GVIA 5EX3A 3MEKA 1TUSA 1UVGA 2QQEA 1MT1A 1V1HA 2KMRA 2ARPF 4E1RA 1TOTA 1Y8FA 1Z7KB 1Y1CA 2GKRI 3E59A 5FUYA 2B8TA 1SGRI 2P6AC 3CXLA 2ENNA 1YU6C 2JW6A 3RU0A 2DB6A 1FAQA 3VDPA 1N13A 2OD1A 1KMAA 2B0UC 3UGLA 4UXJA 5HI7A 1XX6A 3OXLA 2ORVA 1SGPI 1VDDA 3SGQI 2M5XA 3E2IA 2LUYA 1IY6A 2E5RA 1CGII 2VRWB 1HDLA 3SGBI 1TURA 1IY5A 2N52A 1CT4I 5FUWA 2SGEI 1R79A 1SGYI 5DAEA 3OVOA 1FYBA 4GI3C 1CHOI 4JCVE 1PPFI 2JYYA 3VE5A 1X4SA 1R0RI 1UVFA 1RFHA 3D00A 2BUSA 1Y1BA 3B4VC 3OL0A 2L7XA 2QPOA 2SGDI 2YUUA 2KCXA 3UGIA 5FUXA 3TJQA 1KBFA 1TBQR 2ELIA 1LR7A 2J87A 2KMOA 2XRCA 2V1CC 2WVJA 2NU2I 1TBRR 1U5KA 1CT0I 2N71A 1IW4A 4UXHA 1SGQI 3KY9A 1CE3A 1HPTA 1TGSI 1DS2I 3UGDA 1SGNI 1LR9A 2GKVA 4OVOA 1M8CA 1M8BA 4B6DA 1BMOA 3FC3A 3QTLD 2WCYA 2LEOA 3OXGA 1OMTA 1CT2I 2N1AB 1LR8A 2F3CI 2QQ0A 2JA1A 2NU0I 4HGUA 2W0TA 2J9RA 1SGDI 1OMUA 1PTQA 2K9HA 2V53A 1PTRA 2A20A 1FARA 2FNFX 5FUVA 4A24A 1PCEA 5JHWC 2QQDA 2E73A 1BUSA 1OVOA 1H0ZA 1OYVI 4SGBI 3QWPA 2V1CA 3UEJA 2KMQA 1XA6A 2ODDA 1YTPA 3PDNA 4UXIA 3GOXA 1KBEA 1UUCA 2NU1I 3UFFA 5EX0A 3SEKC 2ERWA 1HJAI 2SGPI 2OVOA 2ROWA 1CSOI 2SGQI 1TBOA 2CJSC 1DS3I 2YQPA 3BJIA 4L9MA 2GKTI 1AN1I 5HQ8A 2KMPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5CCM A;  2JW6 A;  3RU0 A;  5HI7 A;  3OXL A;  5EX0 A;  5CCL A;  3QWP A;  5EX3 A;  3MEK A;  3OXG A;  4A24 A;  3OXF A;  2ODD A;  3PDN A;  5HQ8 A;  2OD1 A; 
#chains in the Genus database with same CATH topology
 5CCM A;  1TIH A;  2SGF I;  3VDU A;  2X52 A;  4E1P A;  5CCL A;  2GIV A;  2PQ8 A;  3TO7 A;  2JZM A;  2ORW A;  3UEY A;  1SGE I;  4FKD A;  1Q9B A;  1XBT A;  2L8E A;  2N17 A;  1W3S A;  2WGC A;  3TOA A;  1PJU A;  1P9Z A;  2JXD A;  2X3T A;  9WGA A;  1X74 A;  2NU3 I;  2ENZ A;  1HEV A;  3OXF A;  2UZ3 A;  2DIP A;  3HH2 C;  1TBN A;  1CGJ I;  2QQC A;  1W4R A;  1NUB A;  2NU4 I;  1V1I A;  2GVI A;  5EX3 A;  3MEK A;  1TUS A;  1UVG A;  2QQE A;  1MT1 A;  1V1H A;  2KMR A;  2DKV A;  2ARP F;  1UHA A;  4E1R A;  1TOT A;  1Y8F A;  1Z7K B;  1Y1C A;  2GKR I;  3E59 A;  1P9G A;  5E3Q A;  5FUY A;  1SGR I;  2B8T A;  2P6A C;  3FSX A;  3QAH A;  4WP4 A;  3CXL A;  3TO9 A;  2ENN A;  1YU6 C;  2JW6 A;  1WGT A;  2DB6 A;  3RU0 A;  2Y0M A;  1MJB A;  3VDP A;  1FAQ A;  1N13 A;  2OD1 A;  1KMA A;  2B0U C;  3UGL A;  4UXJ A;  5HI7 A;  1XX6 A;  3OXL A;  1MJ9 A;  1SGP I;  1VDD A;  2ORV A;  3SGQ I;  2M5X A;  3E2I A;  2LUY A;  1IY6 A;  1ULN A;  2E5R A;  1CGI I;  3TOB A;  1K7V A;  2VRW B;  5E3P A;  3TO6 A;  1HDL A;  3SGB I;  1TUR A;  1IY5 A;  2N52 A;  1CT4 I;  5FUW A;  2SGE I;  1R79 A;  1SGY I;  3R5C A;  2OU2 A;  4MPI A;  5DAE A;  3OVO A;  1FYB A;  4GI3 C;  1CHO I;  4JCV E;  1PPF I;  2JYY A;  3VE5 A;  3UGI A;  2CWF A;  4AML A;  1X4S A;  1NXU A;  1R0R I;  1UVF A;  1RFH A;  3D00 A;  2BUS A;  1Y1B A;  1FY7 A;  2OZU A;  2L7X A;  2QPO A;  2SGD I;  2YUU A;  2KCX A;  3B4V C;  3R5D A;  5FUX A;  3TJQ A;  1KBF A;  1TBQ R;  2ELI A;  1LR7 A;  2J87 A;  2KMO A;  2XRC A;  3UOE A;  2V1C C;  2WVJ A;  2NU2 I;  1TBR R;  1U5K A;  1CT0 I;  2N71 A;  3FSY A;  4UXH A;  5E3R A;  1SGQ I;  3KY9 A;  1IW4 A;  1HPT A;  1TGS I;  1S20 A;  1DS2 I;  1CE3 A;  3UGD A;  1K7T A;  3R5B A;  1SGN I;  1WTJ A;  2RC4 A;  5J8C A;  1LR9 A;  2GKV A;  1Z2I A;  1ULM A;  1M8C A;  4OVO A;  1M8B A;  4B6D A;  1BMO A;  3FC3 A;  3QTL D;  2WCY A;  2LEO A;  3OXG A;  7WGA A;  1OMT A;  1CT2 I;  2N1A B;  1LR8 A;  2F3C I;  2QQ0 A;  2JA1 A;  2NU0 I;  4HGU A;  2W0T A;  2J9R A;  3R5A A;  1SGD I;  1OMU A;  1PTQ A;  1WKX A;  2K9H A;  1K7U A;  2LB7 A;  1WGC A;  2V53 A;  1PTR A;  2CWG A;  4DNC A;  2A20 A;  1FAR A;  2FNF X;  5FUV A;  4A24 A;  1PCE A;  5JHW C;  2QQD A;  2E73 A;  1BUS A;  5J8F A;  1OVO A;  1H0Z A;  1OYV I;  3OL0 A;  4SGB I;  3QWP A;  2V1C A;  3UEJ A;  2KMQ A;  1XA6 A;  2ODD A;  1YTP A;  1ULK A;  2RIJ A;  3PDN A;  4UXI A;  3GOX A;  2UVO A;  1KBE A;  1UUC A;  2NU1 I;  3UFF A;  2CWH A;  5EX0 A;  3SEK C;  2ERW A;  1HJA I;  2SGP I;  2OVO A;  2ROW A;  1CSO I;  2SGQ I;  1TBO A;  1MJA A;  2CJS C;  1DS3 I;  2YQP A;  3BJI A;  4L9M A;  2GKT I;  1AN1 I;  5HQ8 A;  2KMP A; 
#chains in the Genus database with same CATH homology
 5CCM A;  1TIH A;  2SGF I;  3VDU A;  4E1P A;  5CCL A;  2JZM A;  2ORW A;  3UEY A;  1SGE I;  4FKD A;  1XBT A;  2L8E A;  2N17 A;  1W3S A;  1PJU A;  2JXD A;  1X74 A;  2NU3 I;  2ENZ A;  3OXF A;  2UZ3 A;  2DIP A;  3HH2 C;  1TBN A;  1CGJ I;  2QQC A;  1W4R A;  1NUB A;  2NU4 I;  1V1I A;  2GVI A;  5EX3 A;  3MEK A;  1TUS A;  1UVG A;  2QQE A;  1MT1 A;  1V1H A;  2KMR A;  2ARP F;  4E1R A;  1TOT A;  1Y8F A;  1Z7K B;  1Y1C A;  2GKR I;  3E59 A;  5FUY A;  2B8T A;  1SGR I;  2P6A C;  3CXL A;  2ENN A;  1YU6 C;  2JW6 A;  3RU0 A;  2DB6 A;  1FAQ A;  3VDP A;  1N13 A;  2OD1 A;  1KMA A;  2B0U C;  3UGL A;  4UXJ A;  5HI7 A;  1XX6 A;  3OXL A;  2ORV A;  1SGP I;  1VDD A;  3SGQ I;  2M5X A;  3E2I A;  2LUY A;  1IY6 A;  2E5R A;  1CGI I;  2VRW B;  1HDL A;  3SGB I;  1TUR A;  1IY5 A;  2N52 A;  1CT4 I;  5FUW A;  2SGE I;  1R79 A;  1SGY I;  5DAE A;  3OVO A;  1FYB A;  4GI3 C;  1CHO I;  4JCV E;  1PPF I;  2JYY A;  3VE5 A;  1X4S A;  1R0R I;  1UVF A;  1RFH A;  3D00 A;  2BUS A;  1Y1B A;  3B4V C;  3OL0 A;  2L7X A;  2QPO A;  2SGD I;  2YUU A;  2KCX A;  3UGI A;  5FUX A;  3TJQ A;  1KBF A;  1TBQ R;  2ELI A;  1LR7 A;  2J87 A;  2KMO A;  2XRC A;  2V1C C;  2WVJ A;  2NU2 I;  1TBR R;  1U5K A;  1CT0 I;  2N71 A;  1IW4 A;  4UXH A;  1SGQ I;  3KY9 A;  1CE3 A;  1HPT A;  1TGS I;  1DS2 I;  3UGD A;  1SGN I;  1LR9 A;  2GKV A;  4OVO A;  1M8C A;  1M8B A;  4B6D A;  1BMO A;  3FC3 A;  3QTL D;  2WCY A;  2LEO A;  3OXG A;  1OMT A;  1CT2 I;  2N1A B;  1LR8 A;  2F3C I;  2QQ0 A;  2JA1 A;  2NU0 I;  4HGU A;  2W0T A;  2J9R A;  1SGD I;  1OMU A;  1PTQ A;  2K9H A;  2V53 A;  1PTR A;  2A20 A;  1FAR A;  2FNF X;  5FUV A;  4A24 A;  1PCE A;  5JHW C;  2QQD A;  2E73 A;  1BUS A;  1OVO A;  1H0Z A;  1OYV I;  4SGB I;  3QWP A;  2V1C A;  3UEJ A;  2KMQ A;  1XA6 A;  2ODD A;  1YTP A;  3PDN A;  4UXI A;  3GOX A;  1KBE A;  1UUC A;  2NU1 I;  3UFF A;  5EX0 A;  3SEK C;  2ERW A;  1HJA I;  2SGP I;  2OVO A;  2ROW A;  1CSO I;  2SGQ I;  1TBO A;  2CJS C;  1DS3 I;  2YQP A;  3BJI A;  4L9M A;  2GKT I;  1AN1 I;  5HQ8 A;  2KMP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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