3OL0 | Genus

Total Genus 5

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	5
sequence length	43
structure length	43
Chain Sequence	HHHPVLLKSTETGQYLRINPDGTVDGTRDRSDPHIQFQISPEG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	De novo protein
source organism	Synthetic construct
publication title	Experimental support for the evolution of symmetric protein architecture from a simple peptide motif. pubmed doi rcsb
molecule keywords	de novo designed monomer trefoil-fold sub-domain which forms
total genus	5
structure length	43
sequence length	43
chains with identical sequence	B, C
ec nomenclature
pdb deposition date	2010-08-25

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.60.260	Alpha Beta	2-Layer Sandwich	Wheat Germ Agglutinin (Isolectin 2); domain 1	Wheat Germ Agglutinin (Isolectin 2); domain 1	3ol0A00

3OL0A
chains in the Genus database with same CATH superfamily

2K9HA 1CSOI 2OVOA 1HEVA 1TURA 2NU3I 1TBQR 2OD1A 1SGPI 1XA6A 5FUVA 2CJSC 1CT2I 3OL0A 2F3CI 1XBTA 1IY5A 2NU0I 3OXLA 3QWPA 1MJ9A 1VDDA 3UFFA 5FUYA 1V1HA 3SEKC 4L9MA 2KMOA 1K7UA 1K7TA 3TOBA 1SGDI 2ENZA 2RIJA 2Y0MA 1LR9A 2DB6A 3E59A 1KBEA 3B4VC 3TO9A 1IY6A 1PTRA 2LEOA 2YUUA 1ULMA 4UXHA 4SGBI 3UEYA 1Z7KB 2JZMA 1K7VA 2SGFI 3CXLA 1TGSI 1U5KA 3R5BA 1FAQA 1R0RI 1S20A 2N71A 1HJAI 1SGEI 1M8BA 3VDPA 1PPFI 3E2IA 1SGQI 1Y8FA 2CWFA 2GVIA 2J9RA 3PDNA 2DKVA 1BUSA 2ELIA 2A20A 2WGCA 2YQPA 1LR7A 1MJAA 5FUXA 2VRWB 2XRCA 2V1CC 4AMLA 2WVJA 4OVOA 1TBNA 3SGBI 4A24A 2ORWA 5CCMA 2GKTI 3TO6A 5J8CA 1KMAA 5E3RA 3FSYA 2QQ0A 1CGJI 1XX6A 1Q9BA 1UVFA 1CT4I 1PCEA 2L8EA 3FSXA 1TUSA 2L7XA 2SGEI 3R5AA 5E3PA 5HQ8A 2JYYA 2OU2A 1PTQA 2UZ3A 2SGDI 4E1RA 1FYBA 2ENNA 1FY7A 1MT1A 3HH2C 2NU4I 3OXFA 1SGNI 2QQEA 1SGRI 3OXGA 3UGDA 2ERWA 2N1AB 1ULNA 5DAEA 1P9ZA 1MJBA 1OMTA 1DS3I 2CWHA 2KMQA 2LB7A 2ODDA 3TOAA 1X4SA 3R5DA 2X3TA 2ROWA 2WCYA 2QQDA 1W4RA 2E5RA 2SGPI 1Y1CA 5HI7A 3MEKA 4UXJA 9WGAA 4WP4A 3TO7A 2J87A 2NU1I 3UEJA 5EX0A 1M8CA 1AN1I 3TJQA 2JW6A 2RC4A 2M5XA 1CHOI 1FARA 1HDLA 1Y1BA 2B0UC 2B8TA 2KMPA 2ARPF 2FNFX 2P6AC 1R79A 1W3SA 2ORVA 3KY9A 4UXIA 1OVOA 1WKXA 3BJIA 4MPIA 2V1CA 3FC3A 1X74A 5FUWA 3RU0A 2NU2I 3VE5A 7WGAA 5E3QA 3UGLA 1DS2I 1N13A 3GOXA 1BMOA 2QPOA 1NXUA 1TBRR 4HGUA 1UUCA 1UHAA 2N52A 2BUSA 3D00A 1PJUA 2E73A 4E1PA 1NUBA 5EX3A 1WGCA 2SGQI 2N17A 2GKRI 2KMRA 2JA1A 1WGTA 1CE3A 1TOTA 1YU6C 1OYVI 2LUYA 3SGQI 1RFHA 1WTJA 2GKVA 4JCVE 1LR8A 4B6DA 2CWGA 3UGIA 1P9GA 3QAHA 3OVOA 1IW4A 3UOEA 1YTPA 3QTLD 2JXDA 1TIHA 2DIPA 1OMUA 2X52A 5J8FA 2OZUA 1TBOA 1KBFA 2PQ8A 1SGYI 2UVOA 4GI3C 1CGII 2QQCA 1V1IA 5CCLA 5JHWC 2KCXA 4FKDA 4DNCA 2GIVA 1CT0I 2W0TA 1H0ZA 3VDUA 1ULKA 2V53A 1HPTA 1UVGA 1Z2IA 3R5CA
chains in the Genus database with same CATH topology

2K9HA 1CSOI 2OVOA 1TURA 2NU3I 1TBQR 2OD1A 1SGPI 1XA6A 5FUVA 2CJSC 1CT2I 3OL0A 2F3CI 1XBTA 1IY5A 2NU0I 3OXLA 3QWPA 1VDDA 3UFFA 5FUYA 1V1HA 3SEKC 4L9MA 2KMOA 1SGDI 2ENZA 1LR9A 2DB6A 3E59A 1KBEA 3B4VC 1IY6A 1PTRA 2LEOA 2YUUA 4UXHA 4SGBI 3UEYA 1Z7KB 2JZMA 2SGFI 3CXLA 1TGSI 1U5KA 1FAQA 1R0RI 2N71A 1HJAI 1SGEI 1M8BA 3VDPA 1PPFI 3E2IA 1SGQI 1Y8FA 2J9RA 2GVIA 3PDNA 1BUSA 2ELIA 2A20A 2YQPA 1LR7A 5FUXA 2VRWB 2XRCA 2V1CC 2WVJA 4OVOA 1TBNA 3SGBI 4A24A 2ORWA 5CCMA 2GKTI 1KMAA 2QQ0A 1CGJI 1XX6A 1UVFA 1CT4I 1PCEA 2L8EA 5HQ8A 1TUSA 2L7XA 2SGEI 2JYYA 4E1RA 1PTQA 2UZ3A 2SGDI 1FYBA 2ENNA 3HH2C 1MT1A 2NU4I 3OXFA 1SGNI 2QQEA 1SGRI 3OXGA 3UGDA 2ERWA 2N1AB 5DAEA 2KMQA 1OMTA 1DS3I 2ODDA 1X4SA 2ROWA 2WCYA 2QQDA 1W4RA 2E5RA 2SGPI 1Y1CA 5HI7A 3MEKA 4UXJA 2J87A 2NU1I 3UEJA 5EX0A 1M8CA 1AN1I 3TJQA 2JW6A 2M5XA 1CHOI 1FARA 1HDLA 1Y1BA 2B0UC 2B8TA 2KMPA 2ARPF 2FNFX 2P6AC 1R79A 1W3SA 2ORVA 3KY9A 4UXIA 1OVOA 3FC3A 3BJIA 2V1CA 1X74A 5FUWA 3RU0A 2NU2I 3VE5A 3UGLA 1DS2I 1N13A 3GOXA 1BMOA 2QPOA 1TBRR 4HGUA 1UUCA 2N52A 2BUSA 3D00A 1PJUA 2E73A 4E1PA 1NUBA 5EX3A 2SGQI 2N17A 2GKRI 2KMRA 2JA1A 1CE3A 1TOTA 1YU6C 1OYVI 2LUYA 3SGQI 1RFHA 2GKVA 4B6DA 4JCVE 1LR8A 3UGIA 3OVOA 1IW4A 1YTPA 3QTLD 2JXDA 1TIHA 2DIPA 1OMUA 1TBOA 1KBFA 1SGYI 4GI3C 5CCLA 1CGII 2QQCA 1V1IA 5JHWC 2KCXA 4FKDA 1CT0I 2W0TA 1H0ZA 3VDUA 2V53A 1HPTA 1UVGA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3OL0 A; 
#chains in the Genus database with same CATH topology
 2K9H A;  1CSO I;  2OVO A;  1HEV A;  1TUR A;  2NU3 I;  1TBQ R;  2OD1 A;  1SGP I;  1XA6 A;  5FUV A;  2CJS C;  1CT2 I;  3OL0 A;  2F3C I;  1XBT A;  1IY5 A;  2NU0 I;  3OXL A;  3QWP A;  1MJ9 A;  1VDD A;  3UFF A;  5FUY A;  1V1H A;  3SEK C;  4L9M A;  2KMO A;  1K7U A;  1K7T A;  3TOB A;  1SGD I;  2ENZ A;  2RIJ A;  2Y0M A;  1LR9 A;  2DB6 A;  3E59 A;  1KBE A;  3B4V C;  3TO9 A;  1IY6 A;  1PTR A;  2LEO A;  2YUU A;  1ULM A;  4UXH A;  4SGB I;  3UEY A;  1Z7K B;  2JZM A;  1K7V A;  2SGF I;  3CXL A;  1TGS I;  1U5K A;  3R5B A;  1FAQ A;  1R0R I;  1S20 A;  2N71 A;  1HJA I;  1SGE I;  1M8B A;  3VDP A;  1PPF I;  3E2I A;  1SGQ I;  1Y8F A;  2CWF A;  2GVI A;  2J9R A;  3PDN A;  2DKV A;  1BUS A;  2ELI A;  2A20 A;  2WGC A;  2YQP A;  1LR7 A;  1MJA A;  5FUX A;  2VRW B;  2XRC A;  2V1C C;  4AML A;  2WVJ A;  4OVO A;  1TBN A;  3SGB I;  4A24 A;  2ORW A;  5CCM A;  2GKT I;  3TO6 A;  5J8C A;  1KMA A;  5E3R A;  3FSY A;  2QQ0 A;  1CGJ I;  1XX6 A;  1Q9B A;  1UVF A;  1CT4 I;  1PCE A;  2L8E A;  3FSX A;  1TUS A;  2L7X A;  2SGE I;  3R5A A;  5E3P A;  5HQ8 A;  2JYY A;  2OU2 A;  1PTQ A;  2UZ3 A;  2SGD I;  4E1R A;  1FYB A;  2ENN A;  1FY7 A;  1MT1 A;  3HH2 C;  2NU4 I;  3OXF A;  1SGN I;  2QQE A;  1SGR I;  3OXG A;  3UGD A;  2ERW A;  2N1A B;  1ULN A;  5DAE A;  1P9Z A;  1MJB A;  1OMT A;  1DS3 I;  2CWH A;  2KMQ A;  2LB7 A;  2ODD A;  3TOA A;  1X4S A;  3R5D A;  2X3T A;  2ROW A;  2WCY A;  2QQD A;  1W4R A;  2E5R A;  2SGP I;  1Y1C A;  5HI7 A;  3MEK A;  4UXJ A;  9WGA A;  4WP4 A;  3TO7 A;  2J87 A;  2NU1 I;  3UEJ A;  5EX0 A;  1M8C A;  1AN1 I;  3TJQ A;  2JW6 A;  2RC4 A;  2M5X A;  1CHO I;  1FAR A;  1HDL A;  1Y1B A;  2B0U C;  2B8T A;  2KMP A;  2ARP F;  2FNF X;  2P6A C;  1R79 A;  1W3S A;  2ORV A;  3KY9 A;  4UXI A;  1OVO A;  1WKX A;  3BJI A;  4MPI A;  2V1C A;  3FC3 A;  1X74 A;  5FUW A;  3RU0 A;  2NU2 I;  3VE5 A;  7WGA A;  5E3Q A;  3UGL A;  1DS2 I;  1N13 A;  3GOX A;  1BMO A;  2QPO A;  1NXU A;  1TBR R;  4HGU A;  1UUC A;  1UHA A;  2N52 A;  2BUS A;  3D00 A;  1PJU A;  2E73 A;  4E1P A;  1NUB A;  5EX3 A;  1WGC A;  2SGQ I;  2N17 A;  2GKR I;  2KMR A;  2JA1 A;  1WGT A;  1CE3 A;  1TOT A;  1YU6 C;  1OYV I;  2LUY A;  3SGQ I;  1RFH A;  1WTJ A;  2GKV A;  4JCV E;  1LR8 A;  4B6D A;  2CWG A;  3UGI A;  1P9G A;  3QAH A;  3OVO A;  1IW4 A;  3UOE A;  1YTP A;  3QTL D;  2JXD A;  1TIH A;  2DIP A;  1OMU A;  2X52 A;  5J8F A;  2OZU A;  1TBO A;  1KBF A;  2PQ8 A;  1SGY I;  2UVO A;  4GI3 C;  1CGI I;  2QQC A;  1V1I A;  5CCL A;  5JHW C;  2KCX A;  4FKD A;  4DNC A;  2GIV A;  1CT0 I;  2W0T A;  1H0Z A;  3VDU A;  1ULK A;  2V53 A;  1HPT A;  1UVG A;  1Z2I A;  3R5C A; 
#chains in the Genus database with same CATH homology
 2K9H A;  1CSO I;  2OVO A;  1TUR A;  2NU3 I;  1TBQ R;  2OD1 A;  1SGP I;  1XA6 A;  5FUV A;  2CJS C;  1CT2 I;  3OL0 A;  2F3C I;  1XBT A;  1IY5 A;  2NU0 I;  3OXL A;  3QWP A;  1VDD A;  3UFF A;  5FUY A;  1V1H A;  3SEK C;  4L9M A;  2KMO A;  1SGD I;  2ENZ A;  1LR9 A;  2DB6 A;  3E59 A;  1KBE A;  3B4V C;  1IY6 A;  1PTR A;  2LEO A;  2YUU A;  4UXH A;  4SGB I;  3UEY A;  1Z7K B;  2JZM A;  2SGF I;  3CXL A;  1TGS I;  1U5K A;  1FAQ A;  1R0R I;  2N71 A;  1HJA I;  1SGE I;  1M8B A;  3VDP A;  1PPF I;  3E2I A;  1SGQ I;  1Y8F A;  2J9R A;  2GVI A;  3PDN A;  1BUS A;  2ELI A;  2A20 A;  2YQP A;  1LR7 A;  5FUX A;  2VRW B;  2XRC A;  2V1C C;  2WVJ A;  4OVO A;  1TBN A;  3SGB I;  4A24 A;  2ORW A;  5CCM A;  2GKT I;  1KMA A;  2QQ0 A;  1CGJ I;  1XX6 A;  1UVF A;  1CT4 I;  1PCE A;  2L8E A;  5HQ8 A;  1TUS A;  2L7X A;  2SGE I;  2JYY A;  4E1R A;  1PTQ A;  2UZ3 A;  2SGD I;  1FYB A;  2ENN A;  3HH2 C;  1MT1 A;  2NU4 I;  3OXF A;  1SGN I;  2QQE A;  1SGR I;  3OXG A;  3UGD A;  2ERW A;  2N1A B;  5DAE A;  2KMQ A;  1OMT A;  1DS3 I;  2ODD A;  1X4S A;  2ROW A;  2WCY A;  2QQD A;  1W4R A;  2E5R A;  2SGP I;  1Y1C A;  5HI7 A;  3MEK A;  4UXJ A;  2J87 A;  2NU1 I;  3UEJ A;  5EX0 A;  1M8C A;  1AN1 I;  3TJQ A;  2JW6 A;  2M5X A;  1CHO I;  1FAR A;  1HDL A;  1Y1B A;  2B0U C;  2B8T A;  2KMP A;  2ARP F;  2FNF X;  2P6A C;  1R79 A;  1W3S A;  2ORV A;  3KY9 A;  4UXI A;  1OVO A;  3FC3 A;  3BJI A;  2V1C A;  1X74 A;  5FUW A;  3RU0 A;  2NU2 I;  3VE5 A;  3UGL A;  1DS2 I;  1N13 A;  3GOX A;  1BMO A;  2QPO A;  1TBR R;  4HGU A;  1UUC A;  2N52 A;  2BUS A;  3D00 A;  1PJU A;  2E73 A;  4E1P A;  1NUB A;  5EX3 A;  2SGQ I;  2N17 A;  2GKR I;  2KMR A;  2JA1 A;  1CE3 A;  1TOT A;  1YU6 C;  1OYV I;  2LUY A;  3SGQ I;  1RFH A;  2GKV A;  4B6D A;  4JCV E;  1LR8 A;  3UGI A;  3OVO A;  1IW4 A;  1YTP A;  3QTL D;  2JXD A;  1TIH A;  2DIP A;  1OMU A;  1TBO A;  1KBF A;  1SGY I;  4GI3 C;  5CCL A;  1CGI I;  2QQC A;  1V1I A;  5JHW C;  2KCX A;  4FKD A;  1CT0 I;  2W0T A;  1H0Z A;  3VDU A;  2V53 A;  1HPT A;  1UVG A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3OL0A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN