3UEJ | Genus

Total Genus 10

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	10
sequence length	65
structure length	65
Chain Sequence	GSRRASVGSHRFKVYNYMSPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREKVANLCEFIVTD

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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Time for openFile(/file/5d033187e2ceffa6962ff589/pdb.gz): 3300 ms

reading 65 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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65 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Metal binding protein
source organism	Mus musculus
publication title	Structural and Functional Characterization of an Anesthetic Binding Site in the Second Cysteine-Rich Domain of Protein Kinase Cdelta pubmed doi rcsb
molecule keywords	Protein kinase C delta type
total genus	10
structure length	65
sequence length	65
chains with identical sequence	B
ec nomenclature	ec 2.7.10.2: Non-specific protein-tyrosine kinase.
pdb deposition date	2011-10-30

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.60.20	Alpha Beta	2-Layer Sandwich	Wheat Germ Agglutinin (Isolectin 2); domain 1	Wheat Germ Agglutinin (Isolectin 2); domain 1	3uejA01

1XBTA 1PTQA 4UXIA 1W4RA 3UEYA 1R79A 1Y8FA 3E2IA 2DB6A 4FKDA 4UXJA 1XA6A 3CXLA 3BJIA 1FARA 3UGIA 3UGLA 1PTRA 4UXHA 1TBOA 5FUXA 2ORVA 1KBEA 4B6DA 4L9MA 2YUUA 2J87A 1TBNA 2ORWA 2J9RA 2GVIA 2QQ0A 2ROWA 2UZ3A 2VRWB 3UFFA 3UGDA 2WVJA 1RFHA 2E73A 1FAQA 2ENZA 2QPOA 2QQEA 1KBFA 5FUYA 5FUWA 2ENNA 5FUVA 2FNFX 3KY9A 1XX6A 3UEJA 2B8TA 2JA1A 2ELIA
chains in the Genus database with same CATH superfamily

4HGUA 2LB7A 1U5KA 1YU6C 2NU2I 4E1PA 2XRCA 5E3QA 5EX0A 1K7VA 2N1AB 1HJAI 2GKVA 2ROWA 5HI7A 3OL0A 1XA6A 2V1CC 3TO6A 4AMLA 1PTRA 2SGPI 1BUSA 4B6DA 2RC4A 1Z7KB 1SGYI 2M5XA 1V1HA 2GVIA 1PPFI 2A20A 1ULMA 2DIPA 1SGRI 1TBQR 2V53A 2WVJA 1V1IA 3OXGA 1TGSI 5E3RA 1CT2I 2OD1A 2OU2A 2SGFI 2UVOA 4OVOA 1FAQA 5FUWA 1TURA 5E3PA 1OMUA 1SGEI 3KY9A 1K7TA 2B8TA 2JA1A 3QWPA 2P6AC 1PTQA 1N13A 1TOTA 1W4RA 1Y8FA 1R0RI 3VDUA 4E1RA 4MPIA 1NXUA 2GKRI 3HH2C 2NU3I 1Z2IA 2QQCA 3FC3A 2ARPF 1SGDI 4FKDA 1TIHA 1IY6A 3CXLA 2E5RA 4WP4A 2X3TA 1LR7A 3BJIA 1M8BA 1OMTA 1IY5A 5J8FA 5FUXA 1FYBA 1S20A 2Y0MA 5CCLA 2YUUA 1HDLA 1ULKA 1TBRR 2J87A 2ORWA 1NUBA 2BUSA 1CSOI 2NU4I 2QQ0A 1BMOA 2NU1I 2UZ3A 3PDNA 9WGAA 1SGPI 2ERWA 5J8CA 2E73A 1P9GA 2ENZA 2RIJA 2L7XA 1SGNI 3UOEA 4A24A 1FY7A 1PCEA 3FSYA 1AN1I 1Y1CA 3MEKA 2WGCA 2ELIA 1UHAA 1WGTA 4UXIA 1VDDA 1M8CA 2CJSC 2SGDI 1R79A 1PJUA 2V1CA 3TOAA 1CGII 2CWFA 2GIVA 3E2IA 1LR9A 1Q9BA 1YTPA 3FSXA 1TUSA 2WCYA 4UXJA 2JZMA 1MJAA 1MJBA 1FARA 4JCVE 5EX3A 3UGIA 2CWHA 1CGJI 3TO7A 2KMQA 3SGBI 3OXLA 4DNCA 2OVOA 2N17A 4L9MA 4GI3C 1KMAA 1CE3A 2CWGA 3B4VC 5JHWC 1WTJA 2SGQI 2ODDA 1W3SA 2PQ8A 1MJ9A 3UFFA 3UGDA 1K7UA 2KMPA 4SGBI 2QPOA 1HEVA 2LEOA 2OZUA 5CCMA 1UVFA 2NU0I 2KMOA 5FUVA 2FNFX 2N52A 1WKXA 1UUCA 2LUYA 2SGEI 1XX6A 2KCXA 2X52A 3TO9A 1WGCA 1SGQI 2JYYA 1XBTA 3OVOA 2N71A 3R5AA 3RU0A 2L8EA 3R5DA 1Y1BA 2B0UC 7WGAA 1DS3I 2DB6A 3TOBA 1HPTA 3R5CA 1LR8A 3TJQA 1OYVI 3D00A 3SEKC 3GOXA 3VE5A 1MT1A 3QTLD 1UVGA 1IW4A 3UGLA 1H0ZA 2DKVA 4UXHA 1TBOA 3VDPA 1DS2I 1KBEA 2KMRA 2ORVA 2W0TA 2JXDA 2JW6A 1TBNA 3QAHA 2J9RA 3R5BA 1ULNA 1CHOI 1X4SA 2VRWB 5HQ8A 1CT4I 3OXFA 1RFHA 2F3CI 2QQEA 3E59A 5FUYA 1KBFA 3SGQI 2ENNA 1CT0I 2YQPA 5DAEA 1X74A 2QQDA 3UEJA 1OVOA 2K9HA 3UEYA 2GKTI 1P9ZA
chains in the Genus database with same CATH topology

4HGUA 1U5KA 1YU6C 2NU2I 4E1PA 2XRCA 5EX0A 2N1AB 1HJAI 2GKVA 5HI7A 3OL0A 1XA6A 2V1CC 1PTRA 2SGPI 1BUSA 4B6DA 1Z7KB 1SGYI 2M5XA 1V1HA 2GVIA 2A20A 1PPFI 2DIPA 1SGRI 1TBQR 2V53A 2WVJA 1V1IA 3OXGA 1TGSI 1CT2I 2OD1A 2SGFI 1FAQA 4OVOA 5FUWA 1TURA 1OMUA 1SGEI 3KY9A 2B8TA 2JA1A 3QWPA 2P6AC 1PTQA 1N13A 1TOTA 1W4RA 1Y8FA 1R0RI 3VDUA 4E1RA 2GKRI 3HH2C 2NU3I 2QQCA 3FC3A 2ARPF 1SGDI 4FKDA 1TIHA 1IY6A 3CXLA 2E5RA 1LR7A 3BJIA 1M8BA 1OMTA 1IY5A 5FUXA 1FYBA 5CCLA 2YUUA 1HDLA 2J87A 1TBRR 2ORWA 2QQ0A 2BUSA 1NUBA 1CSOI 2NU4I 2ROWA 1BMOA 2NU1I 2UZ3A 3PDNA 1SGPI 2ERWA 2E73A 2ENZA 2L7XA 1SGNI 4A24A 1PCEA 1AN1I 1Y1CA 3MEKA 2ELIA 4UXIA 1VDDA 1M8CA 2CJSC 2SGDI 1R79A 1PJUA 2V1CA 1CGII 3E2IA 1LR9A 1YTPA 1TUSA 2WCYA 4UXJA 2JZMA 1FARA 4JCVE 5EX3A 3UGIA 1CGJI 2KMQA 3SGBI 3OXLA 2OVOA 2N17A 4L9MA 4GI3C 1KMAA 1CE3A 3B4VC 5JHWC 2SGQI 2ODDA 1W3SA 3UFFA 3UGDA 2KMPA 4SGBI 2QPOA 2LEOA 5CCMA 1UVFA 2NU0I 2KMOA 5FUVA 2FNFX 2N52A 1UUCA 2LUYA 2SGEI 1XX6A 2KCXA 1SGQI 2JYYA 1XBTA 3OVOA 2N71A 3RU0A 2L8EA 1Y1BA 2B0UC 1DS3I 2DB6A 1HPTA 1LR8A 3TJQA 1OYVI 3D00A 3SEKC 3GOXA 3VE5A 1MT1A 3QTLD 1UVGA 1IW4A 3UGLA 1H0ZA 4UXHA 1TBOA 3VDPA 1DS2I 1KBEA 2KMRA 2ORVA 2W0TA 2JXDA 2JW6A 1TBNA 2J9RA 1X4SA 1CHOI 2VRWB 5HQ8A 1CT4I 3OXFA 1RFHA 2F3CI 2QQEA 3E59A 5FUYA 1KBFA 3SGQI 2ENNA 1CT0I 2YQPA 5DAEA 1X74A 2QQDA 3UEJA 1OVOA 2K9HA 3UEYA 2GKTI
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1XBT A;  1PTQ A;  4UXI A;  1W4R A;  3UEY A;  1R79 A;  1Y8F A;  3E2I A;  2DB6 A;  4FKD A;  4UXJ A;  1XA6 A;  3CXL A;  3BJI A;  1FAR A;  3UGI A;  3UGL A;  1PTR A;  4UXH A;  1TBO A;  5FUX A;  2ORV A;  1KBE A;  4B6D A;  4L9M A;  2YUU A;  2J87 A;  1TBN A;  2ORW A;  2J9R A;  2GVI A;  2QQ0 A;  2ROW A;  2UZ3 A;  2VRW B;  3UFF A;  3UGD A;  2WVJ A;  1RFH A;  2E73 A;  1FAQ A;  2ENZ A;  2QPO A;  2QQE A;  1KBF A;  5FUY A;  5FUW A;  2ENN A;  5FUV A;  2FNF X;  3KY9 A;  1XX6 A;  3UEJ A;  2B8T A;  2JA1 A;  2ELI A; 
#chains in the Genus database with same CATH topology
 4HGU A;  2LB7 A;  1U5K A;  1YU6 C;  2NU2 I;  4E1P A;  2XRC A;  5E3Q A;  5EX0 A;  1K7V A;  2N1A B;  1HJA I;  2GKV A;  2ROW A;  5HI7 A;  3OL0 A;  1XA6 A;  2V1C C;  3TO6 A;  4AML A;  1PTR A;  2SGP I;  1BUS A;  4B6D A;  2RC4 A;  1Z7K B;  1SGY I;  2M5X A;  1V1H A;  2GVI A;  1PPF I;  2A20 A;  1ULM A;  2DIP A;  1SGR I;  1TBQ R;  2V53 A;  2WVJ A;  1V1I A;  3OXG A;  1TGS I;  5E3R A;  1CT2 I;  2OD1 A;  2OU2 A;  2SGF I;  2UVO A;  4OVO A;  1FAQ A;  5FUW A;  1TUR A;  5E3P A;  1OMU A;  1SGE I;  3KY9 A;  1K7T A;  2B8T A;  2JA1 A;  3QWP A;  2P6A C;  1PTQ A;  1N13 A;  1TOT A;  1W4R A;  1Y8F A;  1R0R I;  3VDU A;  4E1R A;  4MPI A;  1NXU A;  2GKR I;  3HH2 C;  2NU3 I;  1Z2I A;  2QQC A;  3FC3 A;  2ARP F;  1SGD I;  4FKD A;  1TIH A;  1IY6 A;  3CXL A;  2E5R A;  4WP4 A;  2X3T A;  1LR7 A;  3BJI A;  1M8B A;  1OMT A;  1IY5 A;  5J8F A;  5FUX A;  1FYB A;  1S20 A;  2Y0M A;  5CCL A;  2YUU A;  1HDL A;  1ULK A;  1TBR R;  2J87 A;  2ORW A;  1NUB A;  2BUS A;  1CSO I;  2NU4 I;  2QQ0 A;  1BMO A;  2NU1 I;  2UZ3 A;  3PDN A;  9WGA A;  1SGP I;  2ERW A;  5J8C A;  2E73 A;  1P9G A;  2ENZ A;  2RIJ A;  2L7X A;  1SGN I;  3UOE A;  4A24 A;  1FY7 A;  1PCE A;  3FSY A;  1AN1 I;  1Y1C A;  3MEK A;  2WGC A;  2ELI A;  1UHA A;  1WGT A;  4UXI A;  1VDD A;  1M8C A;  2CJS C;  2SGD I;  1R79 A;  1PJU A;  2V1C A;  3TOA A;  1CGI I;  2CWF A;  2GIV A;  3E2I A;  1LR9 A;  1Q9B A;  1YTP A;  3FSX A;  1TUS A;  2WCY A;  4UXJ A;  2JZM A;  1MJA A;  1MJB A;  1FAR A;  4JCV E;  5EX3 A;  3UGI A;  2CWH A;  1CGJ I;  3TO7 A;  2KMQ A;  3SGB I;  3OXL A;  4DNC A;  2OVO A;  2N17 A;  4L9M A;  4GI3 C;  1KMA A;  1CE3 A;  2CWG A;  3B4V C;  5JHW C;  1WTJ A;  2SGQ I;  2ODD A;  1W3S A;  2PQ8 A;  1MJ9 A;  3UFF A;  3UGD A;  1K7U A;  2KMP A;  4SGB I;  2QPO A;  1HEV A;  2LEO A;  2OZU A;  5CCM A;  1UVF A;  2NU0 I;  2KMO A;  5FUV A;  2FNF X;  2N52 A;  1WKX A;  1UUC A;  2LUY A;  2SGE I;  1XX6 A;  2KCX A;  2X52 A;  3TO9 A;  1WGC A;  1SGQ I;  2JYY A;  1XBT A;  3OVO A;  2N71 A;  3R5A A;  3RU0 A;  2L8E A;  3R5D A;  1Y1B A;  2B0U C;  7WGA A;  1DS3 I;  2DB6 A;  3TOB A;  1HPT A;  3R5C A;  1LR8 A;  3TJQ A;  1OYV I;  3D00 A;  3SEK C;  3GOX A;  3VE5 A;  1MT1 A;  3QTL D;  1UVG A;  1IW4 A;  3UGL A;  1H0Z A;  2DKV A;  4UXH A;  1TBO A;  3VDP A;  1DS2 I;  1KBE A;  2KMR A;  2ORV A;  2W0T A;  2JXD A;  2JW6 A;  1TBN A;  3QAH A;  2J9R A;  3R5B A;  1ULN A;  1CHO I;  1X4S A;  2VRW B;  5HQ8 A;  1CT4 I;  3OXF A;  1RFH A;  2F3C I;  2QQE A;  3E59 A;  5FUY A;  1KBF A;  3SGQ I;  2ENN A;  1CT0 I;  2YQP A;  5DAE A;  1X74 A;  2QQD A;  3UEJ A;  1OVO A;  2K9H A;  3UEY A;  2GKT I;  1P9Z A; 
#chains in the Genus database with same CATH homology
 4HGU A;  1U5K A;  1YU6 C;  2NU2 I;  4E1P A;  2XRC A;  5EX0 A;  2N1A B;  1HJA I;  2GKV A;  5HI7 A;  3OL0 A;  1XA6 A;  2V1C C;  1PTR A;  2SGP I;  1BUS A;  4B6D A;  1Z7K B;  1SGY I;  2M5X A;  1V1H A;  2GVI A;  2A20 A;  1PPF I;  2DIP A;  1SGR I;  1TBQ R;  2V53 A;  2WVJ A;  1V1I A;  3OXG A;  1TGS I;  1CT2 I;  2OD1 A;  2SGF I;  1FAQ A;  4OVO A;  5FUW A;  1TUR A;  1OMU A;  1SGE I;  3KY9 A;  2B8T A;  2JA1 A;  3QWP A;  2P6A C;  1PTQ A;  1N13 A;  1TOT A;  1W4R A;  1Y8F A;  1R0R I;  3VDU A;  4E1R A;  2GKR I;  3HH2 C;  2NU3 I;  2QQC A;  3FC3 A;  2ARP F;  1SGD I;  4FKD A;  1TIH A;  1IY6 A;  3CXL A;  2E5R A;  1LR7 A;  3BJI A;  1M8B A;  1OMT A;  1IY5 A;  5FUX A;  1FYB A;  5CCL A;  2YUU A;  1HDL A;  2J87 A;  1TBR R;  2ORW A;  2QQ0 A;  2BUS A;  1NUB A;  1CSO I;  2NU4 I;  2ROW A;  1BMO A;  2NU1 I;  2UZ3 A;  3PDN A;  1SGP I;  2ERW A;  2E73 A;  2ENZ A;  2L7X A;  1SGN I;  4A24 A;  1PCE A;  1AN1 I;  1Y1C A;  3MEK A;  2ELI A;  4UXI A;  1VDD A;  1M8C A;  2CJS C;  2SGD I;  1R79 A;  1PJU A;  2V1C A;  1CGI I;  3E2I A;  1LR9 A;  1YTP A;  1TUS A;  2WCY A;  4UXJ A;  2JZM A;  1FAR A;  4JCV E;  5EX3 A;  3UGI A;  1CGJ I;  2KMQ A;  3SGB I;  3OXL A;  2OVO A;  2N17 A;  4L9M A;  4GI3 C;  1KMA A;  1CE3 A;  3B4V C;  5JHW C;  2SGQ I;  2ODD A;  1W3S A;  3UFF A;  3UGD A;  2KMP A;  4SGB I;  2QPO A;  2LEO A;  5CCM A;  1UVF A;  2NU0 I;  2KMO A;  5FUV A;  2FNF X;  2N52 A;  1UUC A;  2LUY A;  2SGE I;  1XX6 A;  2KCX A;  1SGQ I;  2JYY A;  1XBT A;  3OVO A;  2N71 A;  3RU0 A;  2L8E A;  1Y1B A;  2B0U C;  1DS3 I;  2DB6 A;  1HPT A;  1LR8 A;  3TJQ A;  1OYV I;  3D00 A;  3SEK C;  3GOX A;  3VE5 A;  1MT1 A;  3QTL D;  1UVG A;  1IW4 A;  3UGL A;  1H0Z A;  4UXH A;  1TBO A;  3VDP A;  1DS2 I;  1KBE A;  2KMR A;  2ORV A;  2W0T A;  2JXD A;  2JW6 A;  1TBN A;  2J9R A;  1X4S A;  1CHO I;  2VRW B;  5HQ8 A;  1CT4 I;  3OXF A;  1RFH A;  2F3C I;  2QQE A;  3E59 A;  5FUY A;  1KBF A;  3SGQ I;  2ENN A;  1CT0 I;  2YQP A;  5DAE A;  1X74 A;  2QQD A;  3UEJ A;  1OVO A;  2K9H A;  3UEY A;  2GKT I;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3UEJA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization