4AML | Genus

Total Genus 48

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	48
sequence length	171
structure length	171
Chain Sequence	ERCGEQGSNMECPNNLCCSQYGYCGMGGDYCGKGCQNGACWTSKRCGSQAGGATCTNNQCCSQYGYCGFGAEYCGAGCQGGPCRADIKCGSQAGGKLCPNNLCCSQWGFCGLGSEFCGGGCQSGACSTDKPCGKDAGGRVCTNNYCCSKWGSCGIGPGYCGAGCQSGGCDG

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Sugar binding protein
publication title	Structural Basis of Multivalent Binding to Wheat Germ Agglutinin. pubmed doi rcsb
molecule keywords	AGGLUTININ ISOLECTIN 1
total genus	48
structure length	171
sequence length	171
chains with identical sequence	B
ec nomenclature
pdb deposition date	2012-03-12

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00187	Chitin_bind_1	Chitin recognition protein

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.60.10	Alpha Beta	2-Layer Sandwich	Wheat Germ Agglutinin (Isolectin 2); domain 1	Endochitinase-like	4amlA04
3.30.60.10	Alpha Beta	2-Layer Sandwich	Wheat Germ Agglutinin (Isolectin 2); domain 1	Endochitinase-like	4amlA02
3.30.60.10	Alpha Beta	2-Layer Sandwich	Wheat Germ Agglutinin (Isolectin 2); domain 1	Endochitinase-like	4amlA03
3.30.60.10	Alpha Beta	2-Layer Sandwich	Wheat Germ Agglutinin (Isolectin 2); domain 1	Endochitinase-like	4amlA01

1P9ZA 1ULKA 9WGAA 7WGAA 1WKXA 1WGTA 1K7VA 1K7TA 1WGCA 1P9GA 2X3TA 1HEVA 1UHAA 1ULNA 2UVOA 2CWGA 4MPIA 2LB7A 4AMLA 2DKVA 1K7UA 2X52A 2WGCA 1ULMA 1Q9BA 4WP4A
chains in the Genus database with same CATH superfamily

2VRWB 4FKDA 1FAQA 5CCLA 3FC3A 1WKXA 3UGIA 1UVFA 1K7VA 1PPFI 2CWHA 5FUVA 1TBQR 1WGCA 3TO6A 2X3TA 2NU0I 1TOTA 1KBEA 4OVOA 5FUXA 3B4VC 5E3PA 3SGQI 1HDLA 1NUBA 1CHOI 5E3QA 1LR8A 2M5XA 2DIPA 2NU4I 3VDUA 3MEKA 2GIVA 2J9RA 2JA1A 2NU2I 1W3SA 2CWGA 3VE5A 4E1PA 3R5BA 3TO9A 1SGQI 2KMQA 4GI3C 2RIJA 2X52A 3OVOA 3R5DA 1FY7A 2E73A 1WTJA 2A20A 1R79A 2GKVA 2WGCA 2QQCA 1IY6A 1TBRR 1TGSI 1CT0I 2OZUA 1OMTA 1PJUA 1Y8FA 1BUSA 1M8BA 5EX0A 1OYVI 1Q9BA 1YU6C 2ODDA 1ULKA 5DAEA 1UVGA 4HGUA 1RFHA 2N71A 1WGTA 1U5KA 1V1IA 3QAHA 2Y0MA 2YUUA 5HQ8A 1K7TA 5JHWC 1MJAA 1HEVA 1FARA 3SEKC 1SGPI 3E59A 1X74A 2ORVA 1IY5A 1M8CA 1UHAA 2ENNA 2QPOA 2SGFI 2J87A 3TO7A 4DNCA 2RC4A 2UVOA 1AN1I 2CWFA 2FNFX 1MJBA 1HJAI 2K9HA 3FSXA 4MPIA 1X4SA 1SGRI 2KMPA 2DKVA 5EX3A 2L7XA 1TBOA 3CXLA 3TOBA 1VDDA 2ERWA 2V1CA 1S20A 2V53A 2LUYA 3OXGA 5J8CA 3E2IA 2GVIA 2JW6A 2SGDI 3QTLD 2OU2A 2SGQI 3R5AA 2F3CI 3R5CA 2LEOA 1N13A 3OXLA 2ORWA 5J8FA 2ELIA 3TJQA 1SGYI 2NU1I 1DS2I 1TURA 1PTQA 1HPTA 3VDPA 1H0ZA 3UEYA 1W4RA 2N17A 1Y1BA 2YQPA 2OVOA 3FSYA 1Y1CA 2E5RA 1SGDI 1XX6A 3OL0A 2OD1A 2SGEI 2WVJA 2PQ8A 1UUCA 2CJSC 1ULNA 3BJIA 4JCVE 1CT2I 5FUWA 3UGLA 1CGJI 1BMOA 2ENZA 2JZMA 2B0UC 1IW4A 1CE3A 1MT1A 1TUSA 1CT4I 2DB6A 2KCXA 2SGPI 3SGBI 2NU3I 4UXJA 4E1RA 2JYYA 2W0TA 2N1AB 3OXFA 1CSOI 3PDNA 4UXIA 4B6DA 2WCYA 4A24A 2ROWA 3GOXA 1V1HA 5E3RA 5HI7A 4UXHA 4WP4A 2GKRI 1P9ZA 3UEJA 9WGAA 5CCMA 7WGAA 2QQEA 2KMOA 2KMRA 1Z7KB 3KY9A 2BUSA 1P9GA 1TIHA 2ARPF 3UOEA 3QWPA 3D00A 1LR9A 1PTRA 2B8TA 3UGDA 1TBNA 1PCEA 2XRCA 1Z2IA 1MJ9A 2JXDA 1SGEI 3RU0A 2P6AC 3TOAA 1FYBA 3HH2C 1KBFA 2QQ0A 2V1CC 5FUYA 4L9MA 2N52A 4AMLA 2LB7A 2L8EA 1DS3I 2GKTI 1XA6A 1K7UA 1R0RI 1LR7A 4SGBI 1OVOA 1CGII 1SGNI 1KMAA 1OMUA 1YTPA 1XBTA 1NXUA 3UFFA 2QQDA 1ULMA 2UZ3A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1P9Z A;  1ULK A;  9WGA A;  7WGA A;  1WKX A;  1WGT A;  1K7V A;  1K7T A;  1WGC A;  1P9G A;  2X3T A;  1HEV A;  1UHA A;  1ULN A;  2UVO A;  2CWG A;  4MPI A;  2LB7 A;  4AML A;  2DKV A;  1K7U A;  2X52 A;  2WGC A;  1ULM A;  1Q9B A;  4WP4 A; 
#chains in the Genus database with same CATH topology
 2VRW B;  4FKD A;  1FAQ A;  5CCL A;  3FC3 A;  1WKX A;  3UGI A;  1UVF A;  1K7V A;  1PPF I;  2CWH A;  5FUV A;  1TBQ R;  1WGC A;  3TO6 A;  2X3T A;  2NU0 I;  1TOT A;  1KBE A;  4OVO A;  5FUX A;  3B4V C;  5E3P A;  3SGQ I;  1HDL A;  1NUB A;  1CHO I;  5E3Q A;  1LR8 A;  2M5X A;  2DIP A;  2NU4 I;  3VDU A;  3MEK A;  2GIV A;  2J9R A;  2JA1 A;  2NU2 I;  1W3S A;  2CWG A;  3VE5 A;  4E1P A;  3R5B A;  3TO9 A;  1SGQ I;  2KMQ A;  4GI3 C;  2RIJ A;  2X52 A;  3OVO A;  3R5D A;  1FY7 A;  2E73 A;  1WTJ A;  2A20 A;  1R79 A;  2GKV A;  2WGC A;  2QQC A;  1IY6 A;  1TBR R;  1TGS I;  1CT0 I;  2OZU A;  1OMT A;  1PJU A;  1Y8F A;  1BUS A;  1M8B A;  5EX0 A;  1OYV I;  1Q9B A;  1YU6 C;  2ODD A;  1ULK A;  5DAE A;  1UVG A;  4HGU A;  1RFH A;  2N71 A;  1WGT A;  1U5K A;  1V1I A;  3QAH A;  2Y0M A;  2YUU A;  5HQ8 A;  1K7T A;  5JHW C;  1MJA A;  1HEV A;  1FAR A;  3SEK C;  1SGP I;  3E59 A;  1X74 A;  2ORV A;  1IY5 A;  1M8C A;  1UHA A;  2ENN A;  2QPO A;  2SGF I;  2J87 A;  3TO7 A;  4DNC A;  2RC4 A;  2UVO A;  1AN1 I;  2CWF A;  2FNF X;  1MJB A;  1HJA I;  2K9H A;  3FSX A;  4MPI A;  1X4S A;  1SGR I;  2KMP A;  2DKV A;  5EX3 A;  2L7X A;  1TBO A;  3CXL A;  3TOB A;  1VDD A;  2ERW A;  2V1C A;  1S20 A;  2V53 A;  2LUY A;  3OXG A;  5J8C A;  3E2I A;  2GVI A;  2JW6 A;  2SGD I;  3QTL D;  2OU2 A;  2SGQ I;  3R5A A;  2F3C I;  3R5C A;  2LEO A;  1N13 A;  3OXL A;  2ORW A;  5J8F A;  2ELI A;  3TJQ A;  1SGY I;  2NU1 I;  1DS2 I;  1TUR A;  1PTQ A;  1HPT A;  3VDP A;  1H0Z A;  3UEY A;  1W4R A;  2N17 A;  1Y1B A;  2YQP A;  2OVO A;  3FSY A;  1Y1C A;  2E5R A;  1SGD I;  1XX6 A;  3OL0 A;  2OD1 A;  2SGE I;  2WVJ A;  2PQ8 A;  1UUC A;  2CJS C;  1ULN A;  3BJI A;  4JCV E;  1CT2 I;  5FUW A;  3UGL A;  1CGJ I;  1BMO A;  2ENZ A;  2JZM A;  2B0U C;  1IW4 A;  1CE3 A;  1MT1 A;  1TUS A;  1CT4 I;  2DB6 A;  2KCX A;  2SGP I;  3SGB I;  2NU3 I;  4UXJ A;  4E1R A;  2JYY A;  2W0T A;  2N1A B;  3OXF A;  1CSO I;  3PDN A;  4UXI A;  4B6D A;  2WCY A;  4A24 A;  2ROW A;  3GOX A;  1V1H A;  5E3R A;  5HI7 A;  4UXH A;  4WP4 A;  2GKR I;  1P9Z A;  3UEJ A;  9WGA A;  5CCM A;  7WGA A;  2QQE A;  2KMO A;  2KMR A;  1Z7K B;  3KY9 A;  2BUS A;  1P9G A;  1TIH A;  2ARP F;  3UOE A;  3QWP A;  3D00 A;  1LR9 A;  1PTR A;  2B8T A;  3UGD A;  1TBN A;  1PCE A;  2XRC A;  1Z2I A;  1MJ9 A;  2JXD A;  1SGE I;  3RU0 A;  2P6A C;  3TOA A;  1FYB A;  3HH2 C;  1KBF A;  2QQ0 A;  2V1C C;  5FUY A;  4L9M A;  2N52 A;  4AML A;  2LB7 A;  2L8E A;  1DS3 I;  2GKT I;  1XA6 A;  1K7U A;  1R0R I;  1LR7 A;  4SGB I;  1OVO A;  1CGI I;  1SGN I;  1KMA A;  1OMU A;  1YTP A;  1XBT A;  1NXU A;  3UFF A;  2QQD A;  1ULM A;  2UZ3 A; 
#chains in the Genus database with same CATH homology
 1P9Z A;  1ULK A;  9WGA A;  7WGA A;  1WKX A;  1WGT A;  1K7V A;  1K7T A;  1WGC A;  1P9G A;  2X3T A;  1HEV A;  1UHA A;  1ULN A;  2UVO A;  2CWG A;  4MPI A;  2LB7 A;  4AML A;  2DKV A;  1K7U A;  2X52 A;  2WGC A;  1ULM A;  1Q9B A;  4WP4 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4AMLA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations