1NY8A

Solution structure of protein yrba from escherichia coli: northeast structural genomics consortium target er115
Total Genus 14

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
14
sequence length
97
structure length
97
Chain Sequence
MIEDPMENNEIQSVLMNALSLQEVHVSGDGSHFQVIAVGELFDGMSRVKKQQTVYGPLMEYIADNRIHAVSIKAYTPAEWARDRKLNGFLEHHHHHH

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S2 (32-38)TIV1 (29-32)EMPTYAH2 (47-56)S3 (69-74)AH4 (77-85)TIV4 (86-89)AH3 (58-66)TIV3 (66-69)AH1 (9-18)S1 (23-28)Updating...
connected with : NaN
molecule tags Structural genomics, unknown function
source organism Escherichia coli
publication title Solution structure of Protein yrbA from Escherichia Coli: Northeast Structural Genomics Consortium target ER115
rcsb
molecule keywords Protein yrbA
total genus 14
structure length 97
sequence length 97
ec nomenclature
pdb deposition date 2003-02-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01722 BolA BolA-like protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.300.90 Alpha Beta 2-Layer Sandwich GMP Synthetase; Chain A, domain 3 BolA-like 1ny8A00
2KZ0A 2MMAB 3O2EA 4PUHA 5LCIA 2KDNA 2DHMA 4PUIA 1NY8A 2MM9A 1V60A 2NCLA 3TR3A 1XS3A 4PUGA 2MCQA
chains in the Genus database with same CATH superfamily
1ULTA 4U5YD 1P4EA 1XMOC 2AYAA 1FLOA 1HNWC 1HH2P 5BSMA 2E7GA 4RLFA 1K0RA 3VNSA 4DG9A 4X64C 1WH9A 3R9XA 3B7WA 4GXRA 3R9WA 3TDEA 3CQ3A 4LFCC 4DR4C 3PROC 3N2QA 2CXCA 3SO4A 4D4IA 2P2FA 2D1RA 4B3RC 2UXDC 3CQ2A 4DV2C 4DR6C 1JOSA 2OPLA 5KYVA 1PA4A 4X65C 1VLAA 2OO4A 2YX1A 4DV4C 1BA3A 1P4EC 3PESA 5KEIA 4IZ6A 4B3SC 5KYTA 3LNOA 4X66C 2XR1A 4DCSA 1USPB 4RM2A 4LF7C 5H9UA 5BR8C 4XX2A 1XRAA 2P2QA 3LAXA 2E8CA 1M6XA 4GKKC 2D7VA 1N34C 3VNQA 1MKYA 3K6RA 2M5OA 3EQ6A 5LMUC 5BUSA 2YCBA 3A9VA 1UKKA 3CJEA 3EERA 4I9GA 4JI5C 2BJOA 2D1TA 4OYCA 1IBKC 1LCIA 1L2FA 2VZEA 5DV9A 5T8TA 5IT9D 4I9FA 2KDNA 2VQFC 3GR1A 4RMNA 1V60A 3H2TA 3GR0A 3A25A 4DV1C 3O2EA 1USPA 2JNVA 2VSQA 1N33C 4G37A 1KKGA 3PBKA 4DR5C 2ZZMA 1HNZC 3L8CA 1M6XC 4RVOA 3I07A 3J81D 3G7SA 4JI1C 4DR7C 3DLPX 4DV6C 4DCVA 4FUTA 4ODJA 1MD9A 4LE5A 4FTFA 5CZVA 4ISBA 5BURA 2YWBA 1AMUA 4LF4C 4DUZC 5BSVA 2HHHC 3IEUA 2UU9C 4PHTA 4G36A 4JV5C 1J5EC 1PU1A 4HPVA 3RG2A 3IPLA 4KTVA 3IMLA 3LGXA 3TR3A 2CU6A 2D1QA 3NYRA 1T5HX 2Z51A 3GPCA 3I08A 1NYEA 4LFBC 2M5HA 1MDBA 4LF8C 1P7LA 4D4GA 4DCTA 2ATWA 3FCCA 5A2QD 3LUSA 3ETCA 5A1IA 2E8EA 3R44A 4DV7C 2PN2A 2D28C 2Y4NA 3C5EA 4GKJC 4X62C 4AQYC 2DHMA 2E5LC 1IB8A 2CY1A 5LCIA 1FUGA 1N2FA 1RY2A 4NXNC 4G1IA 2D27A 1WF3A 4RVNA 3A9UA 1I94C 4NOZA 4NDNA 2UUAC 3NYQA 2MMAB 3KXWA 1XNQC 3TUFA 4PZPA 2ZZNA 5AE3A 2KZ0A 4GS5A 3NPDA 4BSZA 3DAYA 2ASBA 4OXIA 1V26A 3UEBA 4R1LA 5JRHA 3FCEA 4ZLPA 2NCLA 4D57A 2V7BA 4B3MC 2ONFA 4DUYC 2P2BA 3T1HC 1O90A 2KZFA 3UX3A 1XS3A 1XHJA 1XMQC 2E8FA 2P2JA 4DR1C 3OTOC 4JI7C 3A26A 1V25A 2MCQA 4OX9C 4RLQA 4B3TC 4KTTA 4MTNA 1QM4A 4L7IA 4RM3A 2E0GA 2QVXX 1IBLC 4LF6C 1GPMA 2PROA 1O92A 1FJGC 3UZ0A 1QWIA 1O93A 1XRCA 4DV3C 4TPSB 4GXQA 1EGAA 4WV3A 4LF9C 2DPLA 2MM9A 1N36C 4LF5C 1VEHA 1YJ7A 2VQEC 3ETOA 5BUQA 1MXBA 4WS9A 4BC7A 4PROC 4EATA 1UWDA 5AE2A 3JAMD 5IWAC 2UXCC 2D1SA 3E7XA 3TQIA 1N32C 4JM1A 4LFAC 1O9TA 3L95X 3AF6A 2YWCA 2F4VC 1IBMC 4PUGA 2Y27A 5ADZA 2QL8A 4R1MA 4IR7A 4DR2C 2QW0X 1NY8A 1MXAA 5A19A 4DR3C 4JI4C 5E7QA 2QVYX 2Y4OA 4PUIA 2DYJA 3VNRA 1PG4A 4L2ZA 5FLXD 1WCJA 1HR0C 4MH4A 2P02A 4BBYA 1MXCA 4FUQA 2BH1X 2UUBC 4YY3C 1T5DX 3AY0A 5BSUA 3J80D 4JI3C 3CQ1A 4K0BA 4JI6C 3N54B 3GKUA 2PT7G 4DV0C 4YHHC 2ZM6C 5BSTA 2WP0C 4R0MA 4DG8A 2EGTA 5K8FA 4JI2C 4PUHA 5K85A 3AF5A 1ZB9A 4DV5C 3IEVA 2P20A 4KHPC 2P2MA 3NI2A 1MDFA 1ML8A 5T8SA 2WD9A 3CW9A 3UX2A 5GTDA 3CW8X 3LNVA 4K0KC 4JI0C 3T1YC 4BC9A 1ZB8A 3S82A 2JMPA 4JYAC 3E7WA 1XNRC 5AE1A 1HNXC 3A4IA 1TH5A 4DCUA 4D56A 5BSRA 1RG9A 1XRBA 5CZXA 3DHVA 4BCAA 5A1GA 5IFIA 4L4QA 1LQLA 2UXBC 2HJGA 2OPLB 1PG3A 4ZJZA 2QVZX 2UUCC 4NXMC 3RV2A 2OBVA 5LMNC 3UOWA 5BSWA 4JI8C
chains in the Genus database with same CATH topology
2KZ0A 2MMAB 3O2EA 4PUHA 5LCIA 2KDNA 2DHMA 4PUIA 1NY8A 2MM9A 1V60A 2NCLA 3TR3A 1XS3A 4PUGA 2MCQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2KZ0 A;  2MMA B;  3O2E A;  4PUH A;  5LCI A;  2KDN A;  2DHM A;  4PUI A;  1NY8 A;  2MM9 A;  1V60 A;  2NCL A;  3TR3 A;  1XS3 A;  4PUG A;  2MCQ A; 
#chains in the Genus database with same CATH topology
 1ULT A;  4U5Y D;  1P4E A;  1XMO C;  2AYA A;  1FLO A;  1HNW C;  1HH2 P;  5BSM A;  2E7G A;  4RLF A;  1K0R A;  3VNS A;  4DG9 A;  4X64 C;  1WH9 A;  3R9X A;  3B7W A;  4GXR A;  3R9W A;  3TDE A;  3CQ3 A;  4LFC C;  4DR4 C;  3PRO C;  3N2Q A;  2CXC A;  3SO4 A;  4D4I A;  2P2F A;  2D1R A;  4B3R C;  2UXD C;  3CQ2 A;  4DV2 C;  4DR6 C;  1JOS A;  2OPL A;  5KYV A;  1PA4 A;  4X65 C;  1VLA A;  2OO4 A;  2YX1 A;  4DV4 C;  1BA3 A;  1P4E C;  3PES A;  5KEI A;  4IZ6 A;  4B3S C;  5KYT A;  3LNO A;  4X66 C;  2XR1 A;  4DCS A;  1USP B;  4RM2 A;  4LF7 C;  5H9U A;  5BR8 C;  4XX2 A;  1XRA A;  2P2Q A;  3LAX A;  2E8C A;  1M6X A;  4GKK C;  2D7V A;  1N34 C;  3VNQ A;  1MKY A;  3K6R A;  2M5O A;  3EQ6 A;  5LMU C;  5BUS A;  2YCB A;  3A9V A;  1UKK A;  3CJE A;  3EER A;  4I9G A;  4JI5 C;  2BJO A;  2D1T A;  4OYC A;  1IBK C;  1LCI A;  1L2F A;  2VZE A;  5DV9 A;  5T8T A;  5IT9 D;  4I9F A;  2KDN A;  2VQF C;  3GR1 A;  4RMN A;  1V60 A;  3H2T A;  3GR0 A;  3A25 A;  4DV1 C;  3O2E A;  1USP A;  2JNV A;  2VSQ A;  1N33 C;  4G37 A;  1KKG A;  3PBK A;  4DR5 C;  2ZZM A;  1HNZ C;  3L8C A;  1M6X C;  4RVO A;  3I07 A;  3J81 D;  3G7S A;  4JI1 C;  4DR7 C;  3DLP X;  4DV6 C;  4DCV A;  4FUT A;  4ODJ A;  1MD9 A;  4LE5 A;  4FTF A;  5CZV A;  4ISB A;  5BUR A;  2YWB A;  1AMU A;  4LF4 C;  4DUZ C;  5BSV A;  2HHH C;  3IEU A;  2UU9 C;  4PHT A;  4G36 A;  4JV5 C;  1J5E C;  1PU1 A;  4HPV A;  3RG2 A;  3IPL A;  4KTV A;  3IML A;  3LGX A;  3TR3 A;  2CU6 A;  2D1Q A;  3NYR A;  1T5H X;  2Z51 A;  3GPC A;  3I08 A;  1NYE A;  4LFB C;  2M5H A;  1MDB A;  4LF8 C;  1P7L A;  4D4G A;  4DCT A;  2ATW A;  3FCC A;  5A2Q D;  3LUS A;  3ETC A;  5A1I A;  2E8E A;  3R44 A;  4DV7 C;  2PN2 A;  2D28 C;  2Y4N A;  3C5E A;  4GKJ C;  4X62 C;  4AQY C;  2DHM A;  2E5L C;  1IB8 A;  2CY1 A;  5LCI A;  1FUG A;  1N2F A;  1RY2 A;  4NXN C;  4G1I A;  2D27 A;  1WF3 A;  4RVN A;  3A9U A;  1I94 C;  4NOZ A;  4NDN A;  2UUA C;  3NYQ A;  2MMA B;  3KXW A;  1XNQ C;  3TUF A;  4PZP A;  2ZZN A;  5AE3 A;  2KZ0 A;  4GS5 A;  3NPD A;  4BSZ A;  3DAY A;  2ASB A;  4OXI A;  1V26 A;  3UEB A;  4R1L A;  5JRH A;  3FCE A;  4ZLP A;  2NCL A;  4D57 A;  2V7B A;  4B3M C;  2ONF A;  4DUY C;  2P2B A;  3T1H C;  1O90 A;  2KZF A;  3UX3 A;  1XS3 A;  1XHJ A;  1XMQ C;  2E8F A;  2P2J A;  4DR1 C;  3OTO C;  4JI7 C;  3A26 A;  1V25 A;  2MCQ A;  4OX9 C;  4RLQ A;  4B3T C;  4KTT A;  4MTN A;  1QM4 A;  4L7I A;  4RM3 A;  2E0G A;  2QVX X;  1IBL C;  4LF6 C;  1GPM A;  2PRO A;  1O92 A;  1FJG C;  3UZ0 A;  1QWI A;  1O93 A;  1XRC A;  4DV3 C;  4TPS B;  4GXQ A;  1EGA A;  4WV3 A;  4LF9 C;  2DPL A;  2MM9 A;  1N36 C;  4LF5 C;  1VEH A;  1YJ7 A;  2VQE C;  3ETO A;  5BUQ A;  1MXB A;  4WS9 A;  4BC7 A;  4PRO C;  4EAT A;  1UWD A;  5AE2 A;  3JAM D;  5IWA C;  2UXC C;  2D1S A;  3E7X A;  3TQI A;  1N32 C;  4JM1 A;  4LFA C;  1O9T A;  3L95 X;  3AF6 A;  2YWC A;  2F4V C;  1IBM C;  4PUG A;  2Y27 A;  5ADZ A;  2QL8 A;  4R1M A;  4IR7 A;  4DR2 C;  2QW0 X;  1NY8 A;  1MXA A;  5A19 A;  4DR3 C;  4JI4 C;  5E7Q A;  2QVY X;  2Y4O A;  4PUI A;  2DYJ A;  3VNR A;  1PG4 A;  4L2Z A;  5FLX D;  1WCJ A;  1HR0 C;  4MH4 A;  2P02 A;  4BBY A;  1MXC A;  4FUQ A;  2BH1 X;  2UUB C;  4YY3 C;  1T5D X;  3AY0 A;  5BSU A;  3J80 D;  4JI3 C;  3CQ1 A;  4K0B A;  4JI6 C;  3N54 B;  3GKU A;  2PT7 G;  4DV0 C;  4YHH C;  2ZM6 C;  5BST A;  2WP0 C;  4R0M A;  4DG8 A;  2EGT A;  5K8F A;  4JI2 C;  4PUH A;  5K85 A;  3AF5 A;  1ZB9 A;  4DV5 C;  3IEV A;  2P20 A;  4KHP C;  2P2M A;  3NI2 A;  1MDF A;  1ML8 A;  5T8S A;  2WD9 A;  3CW9 A;  3UX2 A;  5GTD A;  3CW8 X;  3LNV A;  4K0K C;  4JI0 C;  3T1Y C;  4BC9 A;  1ZB8 A;  3S82 A;  2JMP A;  4JYA C;  3E7W A;  1XNR C;  5AE1 A;  1HNX C;  3A4I A;  1TH5 A;  4DCU A;  4D56 A;  5BSR A;  1RG9 A;  1XRB A;  5CZX A;  3DHV A;  4BCA A;  5A1G A;  5IFI A;  4L4Q A;  1LQL A;  2UXB C;  2HJG A;  2OPL B;  1PG3 A;  4ZJZ A;  2QVZ X;  2UUC C;  4NXM C;  3RV2 A;  2OBV A;  5LMN C;  3UOW A;  5BSW A;  4JI8 C; 
#chains in the Genus database with same CATH homology
 2KZ0 A;  2MMA B;  3O2E A;  4PUH A;  5LCI A;  2KDN A;  2DHM A;  4PUI A;  1NY8 A;  2MM9 A;  1V60 A;  2NCL A;  3TR3 A;  1XS3 A;  4PUG A;  2MCQ A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.