3CQ3A

Structure of the dtdp-4-keto-l-rhamnose reductase related protein (other form) from thermus thermophilus hb8
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
98
structure length
98
Chain Sequence
b'NPLEAQAWALLEAVYDPELGLDVVNLGLIYDLVVEPPRAYVRMTLTTPGCPLHDSLGEAVRQALSRLPGVEEVEVEVTFEPPWTLARLSEKARRLLGW'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of the DTDP-4-Keto-L-Rhamnose Reductase related protein (other form) from Thermus Thermophilus HB8
rcsb
molecule keywords Putative uncharacterized protein TTHB138
source organism Thermus thermophilus
molecule tags Oxidoreductase
total genus 24
structure length 98
sequence length 98
chains with identical sequence B, C, D, E
ec nomenclature
pdb deposition date 2008-04-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01883 FeS_assembly_P Iron-sulfur cluster assembly protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.300.130 Alpha Beta 2-Layer Sandwich GMP Synthetase; Chain A, domain 3 Fe-S cluster assembly (FSCA) 3cq3A00
3UX3A 2CU6A 2JNVA 3CQ2A 3UX2A 1UWDA 3LNOA 2M5OA 1WCJA 3CQ3A 1TH5A 2M5HA 3CQ1A 1XHJA 2Z51A 1VEHA
chains in the Genus database with same CATH superfamily
1EGAA 1MXCA 4LF5C 1WCJA 4NXMC 4BCAA 1O90A 3RV2A 2DPLA 3IMLA 4JI7C 1LCIA 4FUQA 1VEHA 1FJGC 3CQ2A 4BBYA 4L4QA 5T8TA 4X64C 2ONFA 3CQ1A 3TQIA 1XRBA 1AMUA 3UX3A 5BUSA 2D1RA 2CU6A 4DG8A 2QL8A 2KZFA 4B3SC 2EGTA 3A26A 4DR1C 2OPLB 2UXDC 4LFBC 4JV5C 4DR3C 2D27A 4G1IA 2AYAA 2PROA 2QW0X 1L2FA 2WP0C 4WS9A 3JAMD 2VZEA 2UUCC 4DV6C 1BA3A 1ML8A 3LAXA 5DV9A 3FCEA 2UU9C 2ZZMA 4PUHA 4GKKC 2OO4A 4RM2A 5IWAC 1MDBA 5A1GA 1WF3A 1PG3A 5BUQA 5KEIA 4DV3C 4RLQA 2CXCA 4GS5A 5BR8C 1O93A 3R9WA 1LQLA 1QWIA 1N34C 1N32C 1V25A 4LFAC 2M5OA 2E8FA 5IT9D 2Z51A 2E7GA 5FLXD 4LF4C 3KXWA 4RVOA 3UOWA 3LNOA 1HH2P 3K6RA 5JRHA 4GXRA 3OTOC 4L2ZA 3O2EA 3NYRA 4FUTA 3AF5A 4X65C 1USPA 2UUAC 1GPMA 4WV3A 3CW8X 2D28C 4DUZC 3TR3A 4L7IA 1HR0C 5T8SA 4PUIA 3AF6A 4JI6C 2V7BA 4EATA 3L95X 5AE2A 2BH1X 4R1LA 1TH5A 3N2QA 5BSVA 4LF6C 2MMAB 2P2BA 4BC7A 5BSRA 2D1QA 4GKJC 3L8CA 3EERA 5AE1A 1HNZC 4D4IA 3AY0A 1IBMC 4RM3A 2YX1A 4JI3C 1PU1A 4DG9A 3FCCA 1ULTA 4RLFA 1P7LA 2P2JA 4JI4C 1XNQC 1MXAA 3TUFA 1XMOC 5BSUA 3T1HC 4ZJZA 3CW9A 1IBLC 3ETCA 4DR4C 4D57A 2UUBC 5BSTA 4DR6C 2E0GA 4R0MA 5BURA 3TDEA 2JMPA 3G7SA 3ETOA 1K0RA 3I07A 1V60A 2CY1A 3GR0A 4D56A 2P2MA 2UXCC 1MD9A 4LF8C 4ISBA 2OBVA 4DV5C 2P20A 4DR7C 3VNRA 4KHPC 3B7WA 3J80D 2P02A 1V26A 2P2QA 4FTFA 4KTVA 1MXBA 3IEUA 1JOSA 2QVXX 4PUGA 3PESA 3IPLA 5K8FA 1USPB 1YJ7A 5CZVA 2Y27A 3DHVA 1N33C 1IB8A 3EQ6A 1T5HX 1ZB9A 3R44A 3A9VA 4JI2C 3GR1A 5K85A 5LMUC 2QVZX 4DR5C 1ZB8A 1N2FA 2JNVA 1N36C 4ZLPA 4MTNA 4DCUA 3NYQA 3RG2A 3DLPX 2PT7G 1XS3A 4YHHC 3IEVA 2ZM6C 4NDNA 2VSQA 2YWBA 5KYVA 1FLOA 1NYEA 4DR2C 1NY8A 3CQ3A 5A1IA 4RMNA 4G36A 4MH4A 2UXBC 4DV2C 4YY3C 4DV1C 1PG4A 5A2QD 4DUYC 1J5EC 1KKGA 4BSZA 4X66C 1RG9A 2E8CA 5GTDA 3E7WA 4OYCA 4I9FA 4DV7C 3LGXA 5KYTA 3N54B 4LFCC 5BSWA 3GKUA 3LNVA 2BJOA 4OX9C 2QVYX 1XHJA 4ODJA 4XX2A 4RVNA 4B3MC 4I9GA 5H9UA 4D4GA 2D7VA 3VNQA 1T5DX 5BSMA 2YWCA 1VLAA 4JI5C 4JYAC 2NCLA 2Y4NA 1M6XA 4LF7C 1UWDA 4JI0C 4DV4C 3LUSA 3GPCA 2VQFC 1QM4A 4X62C 3E7XA 4JI8C 3UEBA 2DYJA 5LMNC 4PZPA 1M6XC 2MM9A 3UZ0A 3NPDA 2PN2A 3SO4A 1UKKA 2E5LC 3CJEA 4DV0C 1HNXC 4NXNC 4DCTA 2Y4OA 5E7QA 3NI2A 2KDNA 1WH9A 1IBKC 1MKYA 4LE5A 3A4IA 1RY2A 1P4EA 3PBKA 3UX2A 4AQYC 4K0KC 3C5EA 2E8EA 1XRAA 2D1SA 3PROC 1XNRC 1P4EC 4R1MA 1O92A 2HHHC 1XMQC 4IZ6A 4B3RC 4BC9A 1XRCA 2OPLA 4JI1C 4PROC 2YCBA 3R9XA 2P2FA 4TPSB 1O9TA 2ATWA 3H2TA 2ASBA 3I08A 2XR1A 1I94C 5ADZA 1FUGA 2WD9A 4PHTA 1PA4A 2MCQA 4LF9C 4B3TC 5CZXA 4U5YD 4NOZA 2DHMA 5A19A 3A25A 4HPVA 2ZZNA 4K0BA 2VQEC 2HJGA 3S82A 5LCIA 5AE3A 3J81D 2KZ0A 3DAYA 4DCSA 2M5HA 4OXIA 5IFIA 1HNWC 4G37A 4JM1A 4GXQA 1MDFA 2F4VC 3VNSA 4KTTA 2D1TA 4IR7A 4DCVA 3A9UA 3T1YC
chains in the Genus database with same CATH topology
3UX3A 2CU6A 2JNVA 3CQ2A 3UX2A 1UWDA 3LNOA 2M5OA 1WCJA 3CQ3A 1TH5A 2M5HA 3CQ1A 1XHJA 2Z51A 1VEHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3UX3 A;  2CU6 A;  2JNV A;  3CQ2 A;  3UX2 A;  1UWD A;  3LNO A;  2M5O A;  1WCJ A;  3CQ3 A;  1TH5 A;  2M5H A;  3CQ1 A;  1XHJ A;  2Z51 A;  1VEH A; 
#chains in the Genus database with same CATH topology
 1EGA A;  1MXC A;  4LF5 C;  1WCJ A;  4NXM C;  4BCA A;  1O90 A;  3RV2 A;  2DPL A;  3IML A;  4JI7 C;  1LCI A;  4FUQ A;  1VEH A;  1FJG C;  3CQ2 A;  4BBY A;  4L4Q A;  5T8T A;  4X64 C;  2ONF A;  3CQ1 A;  3TQI A;  1XRB A;  1AMU A;  3UX3 A;  5BUS A;  2D1R A;  2CU6 A;  4DG8 A;  2QL8 A;  2KZF A;  4B3S C;  2EGT A;  3A26 A;  4DR1 C;  2OPL B;  2UXD C;  4LFB C;  4JV5 C;  4DR3 C;  2D27 A;  4G1I A;  2AYA A;  2PRO A;  2QW0 X;  1L2F A;  2WP0 C;  4WS9 A;  3JAM D;  2VZE A;  2UUC C;  4DV6 C;  1BA3 A;  1ML8 A;  3LAX A;  5DV9 A;  3FCE A;  2UU9 C;  2ZZM A;  4PUH A;  4GKK C;  2OO4 A;  4RM2 A;  5IWA C;  1MDB A;  5A1G A;  1WF3 A;  1PG3 A;  5BUQ A;  5KEI A;  4DV3 C;  4RLQ A;  2CXC A;  4GS5 A;  5BR8 C;  1O93 A;  3R9W A;  1LQL A;  1QWI A;  1N34 C;  1N32 C;  1V25 A;  4LFA C;  2M5O A;  2E8F A;  5IT9 D;  2Z51 A;  2E7G A;  5FLX D;  4LF4 C;  3KXW A;  4RVO A;  3UOW A;  3LNO A;  1HH2 P;  3K6R A;  5JRH A;  4GXR A;  3OTO C;  4L2Z A;  3O2E A;  3NYR A;  4FUT A;  3AF5 A;  4X65 C;  1USP A;  2UUA C;  1GPM A;  4WV3 A;  3CW8 X;  2D28 C;  4DUZ C;  3TR3 A;  4L7I A;  1HR0 C;  5T8S A;  4PUI A;  3AF6 A;  4JI6 C;  2V7B A;  4EAT A;  3L95 X;  5AE2 A;  2BH1 X;  4R1L A;  1TH5 A;  3N2Q A;  5BSV A;  4LF6 C;  2MMA B;  2P2B A;  4BC7 A;  5BSR A;  2D1Q A;  4GKJ C;  3L8C A;  3EER A;  5AE1 A;  1HNZ C;  4D4I A;  3AY0 A;  1IBM C;  4RM3 A;  2YX1 A;  4JI3 C;  1PU1 A;  4DG9 A;  3FCC A;  1ULT A;  4RLF A;  1P7L A;  2P2J A;  4JI4 C;  1XNQ C;  1MXA A;  3TUF A;  1XMO C;  5BSU A;  3T1H C;  4ZJZ A;  3CW9 A;  1IBL C;  3ETC A;  4DR4 C;  4D57 A;  2UUB C;  5BST A;  4DR6 C;  2E0G A;  4R0M A;  5BUR A;  3TDE A;  2JMP A;  3G7S A;  3ETO A;  1K0R A;  3I07 A;  1V60 A;  2CY1 A;  3GR0 A;  4D56 A;  2P2M A;  2UXC C;  1MD9 A;  4LF8 C;  4ISB A;  2OBV A;  4DV5 C;  2P20 A;  4DR7 C;  3VNR A;  4KHP C;  3B7W A;  3J80 D;  2P02 A;  1V26 A;  2P2Q A;  4FTF A;  4KTV A;  1MXB A;  3IEU A;  1JOS A;  2QVX X;  4PUG A;  3PES A;  3IPL A;  5K8F A;  1USP B;  1YJ7 A;  5CZV A;  2Y27 A;  3DHV A;  1N33 C;  1IB8 A;  3EQ6 A;  1T5H X;  1ZB9 A;  3R44 A;  3A9V A;  4JI2 C;  3GR1 A;  5K85 A;  5LMU C;  2QVZ X;  4DR5 C;  1ZB8 A;  1N2F A;  2JNV A;  1N36 C;  4ZLP A;  4MTN A;  4DCU A;  3NYQ A;  3RG2 A;  3DLP X;  2PT7 G;  1XS3 A;  4YHH C;  3IEV A;  2ZM6 C;  4NDN A;  2VSQ A;  2YWB A;  5KYV A;  1FLO A;  1NYE A;  4DR2 C;  1NY8 A;  3CQ3 A;  5A1I A;  4RMN A;  4G36 A;  4MH4 A;  2UXB C;  4DV2 C;  4YY3 C;  4DV1 C;  1PG4 A;  5A2Q D;  4DUY C;  1J5E C;  1KKG A;  4BSZ A;  4X66 C;  1RG9 A;  2E8C A;  5GTD A;  3E7W A;  4OYC A;  4I9F A;  4DV7 C;  3LGX A;  5KYT A;  3N54 B;  4LFC C;  5BSW A;  3GKU A;  3LNV A;  2BJO A;  4OX9 C;  2QVY X;  1XHJ A;  4ODJ A;  4XX2 A;  4RVN A;  4B3M C;  4I9G A;  5H9U A;  4D4G A;  2D7V A;  3VNQ A;  1T5D X;  5BSM A;  2YWC A;  1VLA A;  4JI5 C;  4JYA C;  2NCL A;  2Y4N A;  1M6X A;  4LF7 C;  1UWD A;  4JI0 C;  4DV4 C;  3LUS A;  3GPC A;  2VQF C;  1QM4 A;  4X62 C;  3E7X A;  4JI8 C;  3UEB A;  2DYJ A;  5LMN C;  4PZP A;  1M6X C;  2MM9 A;  3UZ0 A;  3NPD A;  2PN2 A;  3SO4 A;  1UKK A;  2E5L C;  3CJE A;  4DV0 C;  1HNX C;  4NXN C;  4DCT A;  2Y4O A;  5E7Q A;  3NI2 A;  2KDN A;  1WH9 A;  1IBK C;  1MKY A;  4LE5 A;  3A4I A;  1RY2 A;  1P4E A;  3PBK A;  3UX2 A;  4AQY C;  4K0K C;  3C5E A;  2E8E A;  1XRA A;  2D1S A;  3PRO C;  1XNR C;  1P4E C;  4R1M A;  1O92 A;  2HHH C;  1XMQ C;  4IZ6 A;  4B3R C;  4BC9 A;  1XRC A;  2OPL A;  4JI1 C;  4PRO C;  2YCB A;  3R9X A;  2P2F A;  4TPS B;  1O9T A;  2ATW A;  3H2T A;  2ASB A;  3I08 A;  2XR1 A;  1I94 C;  5ADZ A;  1FUG A;  2WD9 A;  4PHT A;  1PA4 A;  2MCQ A;  4LF9 C;  4B3T C;  5CZX A;  4U5Y D;  4NOZ A;  2DHM A;  5A19 A;  3A25 A;  4HPV A;  2ZZN A;  4K0B A;  2VQE C;  2HJG A;  3S82 A;  5LCI A;  5AE3 A;  3J81 D;  2KZ0 A;  3DAY A;  4DCS A;  2M5H A;  4OXI A;  5IFI A;  1HNW C;  4G37 A;  4JM1 A;  4GXQ A;  1MDF A;  2F4V C;  3VNS A;  4KTT A;  2D1T A;  4IR7 A;  4DCV A;  3A9U A;  3T1Y C; 
#chains in the Genus database with same CATH homology
 3UX3 A;  2CU6 A;  2JNV A;  3CQ2 A;  3UX2 A;  1UWD A;  3LNO A;  2M5O A;  1WCJ A;  3CQ3 A;  1TH5 A;  2M5H A;  3CQ1 A;  1XHJ A;  2Z51 A;  1VEH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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