1VEHA

Solution structure of rsgi ruh-018, a nifu-like domain of hirip5 protein from mouse cdna
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
92
structure length
92
Chain Sequence
GSSGSSGSEEDDEVVAMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEVEGVEQVSGPSSG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
source organism Mus musculus
publication title Solution structure of RSGI RUH-018, a NifU-like domain of hirip5 protein from mouse cDNA
rcsb
molecule keywords NifU-like protein HIRIP5
total genus 17
structure length 92
sequence length 92
ec nomenclature
pdb deposition date 2004-03-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01106 NifU NifU-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.300.130 Alpha Beta 2-Layer Sandwich GMP Synthetase; Chain A, domain 3 Fe-S cluster assembly (FSCA) 1vehA01
2M5OA 3UX2A 1VEHA 3CQ2A 3UX3A 2M5HA 3CQ3A 2JNVA 1UWDA 1TH5A 1XHJA 1WCJA 3LNOA 3CQ1A 2Z51A 2CU6A
chains in the Genus database with same CATH superfamily
3I08A 1HNWC 4MH4A 4G37A 4AQYC 3K6RA 3B7WA 3E7XA 4OX9C 2VQEC 1IBMC 3N54B 2UXDC 1WH9A 3R9XA 1P7LA 3UEBA 4B3SC 2E0GA 1MD9A 3PBKA 5E7QA 1P4EC 3UX2A 1VLAA 3R9WA 1MKYA 5BSTA 2XR1A 4PHTA 1XRCA 3CJEA 1TH5A 5AE2A 5IWAC 1LQLA 3UX3A 4OYCA 2JNVA 5CZXA 3T1HC 1USPB 5A19A 2HHHC 1NY8A 4PZPA 3S82A 3FCEA 3A9UA 3NYRA 1V60A 2MM9A 3CQ1A 2UXBC 2UU9C 1FUGA 4BC9A 4B3TC 1RG9A 5BURA 5A1GA 2WD9A 1N34C 1ML8A 4PROC 2F4VC 2OPLB 5T8TA 1HNZC 3E7WA 2M5HA 4X66C 1MXBA 2CY1A 1PU1A 4DR7C 1T5DX 1M6XC 3LNOA 5AE3A 4DV4C 1FLOA 4JV5C 2OPLA 1O9TA 5FLXD 4LF6C 2E8EA 4EATA 2D1SA 3LGXA 1XRAA 4GXQA 2VSQA 1XNQC 2ATWA 2UUCC 5BR8C 4ODJA 4OXIA 5BSRA 5H9UA 5KEIA 4U5YD 2BH1X 3A9VA 2YX1A 2E7GA 3FCCA 4PUHA 4D4GA 3AF5A 4PUIA 2DPLA 4I9GA 1V25A 5LMNC 4DR6C 1N33C 1NYEA 3PROC 4GXRA 4BC7A 1XHJA 1QM4A 4RM2A 3O2EA 2HJGA 1BA3A 2ZZMA 1MDFA 1N2FA 4JI2C 1IBLC 1GPMA 2KZFA 2QW0X 2PROA 3T1YC 2D1RA 4DV6C 4FTFA 4RLFA 4BCAA 3CQ3A 3LNVA 4LF5C 2D27A 4D56A 2PN2A 5K8FA 3GR0A 1ZB9A 5DV9A 4HPVA 1MXCA 3DAYA 4KHPC 3RV2A 4L4QA 2QVYX 3ETCA 4DG9A 5AE1A 5BUQA 5ADZA 4RLQA 4GKKC 4G36A 2M5OA 3C5EA 3LAXA 4LF8C 4LF4C 4YY3C 3L95X 4JI1C 1V26A 1ZB8A 1MXAA 3TUFA 4DR1C 3IEUA 2OBVA 1J5EC 4LFCC 5KYVA 1HNXC 1O92A 5A1IA 4X64C 4LE5A 5KYTA 2Y27A 1IBKC 3GKUA 4WV3A 1K0RA 4K0KC 5CZVA 1O90A 4JI8C 3JAMD 1IB8A 3R44A 1P4EA 2Z51A 2WP0C 4NXMC 3IPLA 3TDEA 2MCQA 3L8CA 3N2QA 3CQ2A 4YHHC 1N32C 4DUYC 4MTNA 2P2QA 1FJGC 4DV2C 2P2BA 2ZM6C 2BJOA 4ZLPA 4DCUA 3OTOC 2UUBC 2KZ0A 2DYJA 2YCBA 1ULTA 3G7SA 4LF9C 3CW8X 5A2QD 2D1QA 4LFAC 2YWBA 3EQ6A 1HH2P 5IFIA 2YWCA 2Y4OA 5T8SA 4DUZC 4IR7A 4DV3C 2QVXX 2PT7G 4KTVA 2OO4A 1VEHA 2UXCC 3UOWA 4K0BA 2D7VA 1XNRC 2NCLA 3GR1A 4DV0C 4JI4C 4DV7C 4GS5A 4JYAC 2EGTA 3DLPX 4DCVA 4RM3A 4I9FA 1JOSA 2AYAA 3DHVA 3J81D 2VZEA 2E5LC 3NPDA 1LCIA 3UZ0A 5IT9D 4B3RC 1WCJA 5LCIA 4JI3C 2Y4NA 3PESA 2P2JA 4DG8A 1T5HX 4PUGA 2ONFA 2P20A 4WS9A 4GKJC 5BSVA 2MMAB 3GPCA 4FUTA 4D57A 4BSZA 1UKKA 2P2FA 5GTDA 5K85A 4NDNA 3A4IA 1XRBA 4TPSB 3VNRA 3J80D 3CW9A 1AMUA 2JMPA 4NOZA 4XX2A 3VNQA 4R0MA 2QL8A 4R1MA 4KTTA 4L7IA 4JI0C 4JI6C 4JM1A 1PG4A 4L2ZA 3ETOA 1XMQC 4X62C 1YJ7A 1O93A 1XS3A 3VNSA 1EGAA 2DHMA 2KDNA 3AF6A 3RG2A 2V7BA 3A26A 3EERA 1WF3A 3TR3A 4JI7C 3NI2A 1HR0C 3AY0A 1XMOC 3SO4A 2ZZNA 4LF7C 1USPA 3IMLA 2CXCA 4DR2C 4G1IA 4RVNA 4JI5C 4ZJZA 1QWIA 4R1LA 3TQIA 4DV5C 2UUAC 1UWDA 1I94C 1MDBA 4RVOA 2ASBA 2P02A 3IEVA 4B3MC 1RY2A 1PG3A 4DCSA 5BSUA 4LFBC 1N36C 4FUQA 2E8FA 1PA4A 2D1TA 4DR5C 1KKGA 3H2TA 3NYQA 4D4IA 4BBYA 3I07A 5LMUC 4DR4C 5JRHA 2D28C 5BSMA 2CU6A 4ISBA 3KXWA 1M6XA 2E8CA 4NXNC 4RMNA 4X65C 4DR3C 4IZ6A 5BSWA 5BUSA 3LUSA 1L2FA 2QVZX 3A25A 4DCTA 2P2MA 2VQFC 4DV1C
chains in the Genus database with same CATH topology
2M5OA 3UX2A 1VEHA 3CQ2A 3UX3A 2M5HA 3CQ3A 2JNVA 1UWDA 1TH5A 1XHJA 1WCJA 3LNOA 3CQ1A 2Z51A 2CU6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2M5O A;  3UX2 A;  1VEH A;  3CQ2 A;  3UX3 A;  2M5H A;  3CQ3 A;  2JNV A;  1UWD A;  1TH5 A;  1XHJ A;  1WCJ A;  3LNO A;  3CQ1 A;  2Z51 A;  2CU6 A; 
#chains in the Genus database with same CATH topology
 3I08 A;  1HNW C;  4MH4 A;  4G37 A;  4AQY C;  3K6R A;  3B7W A;  3E7X A;  4OX9 C;  2VQE C;  1IBM C;  3N54 B;  2UXD C;  1WH9 A;  3R9X A;  1P7L A;  3UEB A;  4B3S C;  2E0G A;  1MD9 A;  3PBK A;  5E7Q A;  1P4E C;  3UX2 A;  1VLA A;  3R9W A;  1MKY A;  5BST A;  2XR1 A;  4PHT A;  1XRC A;  3CJE A;  1TH5 A;  5AE2 A;  5IWA C;  1LQL A;  3UX3 A;  4OYC A;  2JNV A;  5CZX A;  3T1H C;  1USP B;  5A19 A;  2HHH C;  1NY8 A;  4PZP A;  3S82 A;  3FCE A;  3A9U A;  3NYR A;  1V60 A;  2MM9 A;  3CQ1 A;  2UXB C;  2UU9 C;  1FUG A;  4BC9 A;  4B3T C;  1RG9 A;  5BUR A;  5A1G A;  2WD9 A;  1N34 C;  1ML8 A;  4PRO C;  2F4V C;  2OPL B;  5T8T A;  1HNZ C;  3E7W A;  2M5H A;  4X66 C;  1MXB A;  2CY1 A;  1PU1 A;  4DR7 C;  1T5D X;  1M6X C;  3LNO A;  5AE3 A;  4DV4 C;  1FLO A;  4JV5 C;  2OPL A;  1O9T A;  5FLX D;  4LF6 C;  2E8E A;  4EAT A;  2D1S A;  3LGX A;  1XRA A;  4GXQ A;  2VSQ A;  1XNQ C;  2ATW A;  2UUC C;  5BR8 C;  4ODJ A;  4OXI A;  5BSR A;  5H9U A;  5KEI A;  4U5Y D;  2BH1 X;  3A9V A;  2YX1 A;  2E7G A;  3FCC A;  4PUH A;  4D4G A;  3AF5 A;  4PUI A;  2DPL A;  4I9G A;  1V25 A;  5LMN C;  4DR6 C;  1N33 C;  1NYE A;  3PRO C;  4GXR A;  4BC7 A;  1XHJ A;  1QM4 A;  4RM2 A;  3O2E A;  2HJG A;  1BA3 A;  2ZZM A;  1MDF A;  1N2F A;  4JI2 C;  1IBL C;  1GPM A;  2KZF A;  2QW0 X;  2PRO A;  3T1Y C;  2D1R A;  4DV6 C;  4FTF A;  4RLF A;  4BCA A;  3CQ3 A;  3LNV A;  4LF5 C;  2D27 A;  4D56 A;  2PN2 A;  5K8F A;  3GR0 A;  1ZB9 A;  5DV9 A;  4HPV A;  1MXC A;  3DAY A;  4KHP C;  3RV2 A;  4L4Q A;  2QVY X;  3ETC A;  4DG9 A;  5AE1 A;  5BUQ A;  5ADZ A;  4RLQ A;  4GKK C;  4G36 A;  2M5O A;  3C5E A;  3LAX A;  4LF8 C;  4LF4 C;  4YY3 C;  3L95 X;  4JI1 C;  1V26 A;  1ZB8 A;  1MXA A;  3TUF A;  4DR1 C;  3IEU A;  2OBV A;  1J5E C;  4LFC C;  5KYV A;  1HNX C;  1O92 A;  5A1I A;  4X64 C;  4LE5 A;  5KYT A;  2Y27 A;  1IBK C;  3GKU A;  4WV3 A;  1K0R A;  4K0K C;  5CZV A;  1O90 A;  4JI8 C;  3JAM D;  1IB8 A;  3R44 A;  1P4E A;  2Z51 A;  2WP0 C;  4NXM C;  3IPL A;  3TDE A;  2MCQ A;  3L8C A;  3N2Q A;  3CQ2 A;  4YHH C;  1N32 C;  4DUY C;  4MTN A;  2P2Q A;  1FJG C;  4DV2 C;  2P2B A;  2ZM6 C;  2BJO A;  4ZLP A;  4DCU A;  3OTO C;  2UUB C;  2KZ0 A;  2DYJ A;  2YCB A;  1ULT A;  3G7S A;  4LF9 C;  3CW8 X;  5A2Q D;  2D1Q A;  4LFA C;  2YWB A;  3EQ6 A;  1HH2 P;  5IFI A;  2YWC A;  2Y4O A;  5T8S A;  4DUZ C;  4IR7 A;  4DV3 C;  2QVX X;  2PT7 G;  4KTV A;  2OO4 A;  1VEH A;  2UXC C;  3UOW A;  4K0B A;  2D7V A;  1XNR C;  2NCL A;  3GR1 A;  4DV0 C;  4JI4 C;  4DV7 C;  4GS5 A;  4JYA C;  2EGT A;  3DLP X;  4DCV A;  4RM3 A;  4I9F A;  1JOS A;  2AYA A;  3DHV A;  3J81 D;  2VZE A;  2E5L C;  3NPD A;  1LCI A;  3UZ0 A;  5IT9 D;  4B3R C;  1WCJ A;  5LCI A;  4JI3 C;  2Y4N A;  3PES A;  2P2J A;  4DG8 A;  1T5H X;  4PUG A;  2ONF A;  2P20 A;  4WS9 A;  4GKJ C;  5BSV A;  2MMA B;  3GPC A;  4FUT A;  4D57 A;  4BSZ A;  1UKK A;  2P2F A;  5GTD A;  5K85 A;  4NDN A;  3A4I A;  1XRB A;  4TPS B;  3VNR A;  3J80 D;  3CW9 A;  1AMU A;  2JMP A;  4NOZ A;  4XX2 A;  3VNQ A;  4R0M A;  2QL8 A;  4R1M A;  4KTT A;  4L7I A;  4JI0 C;  4JI6 C;  4JM1 A;  1PG4 A;  4L2Z A;  3ETO A;  1XMQ C;  4X62 C;  1YJ7 A;  1O93 A;  1XS3 A;  3VNS A;  1EGA A;  2DHM A;  2KDN A;  3AF6 A;  3RG2 A;  2V7B A;  3A26 A;  3EER A;  1WF3 A;  3TR3 A;  4JI7 C;  3NI2 A;  1HR0 C;  3AY0 A;  1XMO C;  3SO4 A;  2ZZN A;  4LF7 C;  1USP A;  3IML A;  2CXC A;  4DR2 C;  4G1I A;  4RVN A;  4JI5 C;  4ZJZ A;  1QWI A;  4R1L A;  3TQI A;  4DV5 C;  2UUA C;  1UWD A;  1I94 C;  1MDB A;  4RVO A;  2ASB A;  2P02 A;  3IEV A;  4B3M C;  1RY2 A;  1PG3 A;  4DCS A;  5BSU A;  4LFB C;  1N36 C;  4FUQ A;  2E8F A;  1PA4 A;  2D1T A;  4DR5 C;  1KKG A;  3H2T A;  3NYQ A;  4D4I A;  4BBY A;  3I07 A;  5LMU C;  4DR4 C;  5JRH A;  2D28 C;  5BSM A;  2CU6 A;  4ISB A;  3KXW A;  1M6X A;  2E8C A;  4NXN C;  4RMN A;  4X65 C;  4DR3 C;  4IZ6 A;  5BSW A;  5BUS A;  3LUS A;  1L2F A;  2QVZ X;  3A25 A;  4DCT A;  2P2M A;  2VQF C;  4DV1 C; 
#chains in the Genus database with same CATH homology
 2M5O A;  3UX2 A;  1VEH A;  3CQ2 A;  3UX3 A;  2M5H A;  3CQ3 A;  2JNV A;  1UWD A;  1TH5 A;  1XHJ A;  1WCJ A;  3LNO A;  3CQ1 A;  2Z51 A;  2CU6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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