1VEHA

Solution structure of rsgi ruh-018, a nifu-like domain of hirip5 protein from mouse cdna
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
92
structure length
92
Chain Sequence
b'GSSGSSGSEEDDEVVAMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEVEGVEQVSGPSSG'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Solution structure of RSGI RUH-018, a NifU-like domain of hirip5 protein from mouse cDNA
rcsb
molecule keywords NifU-like protein HIRIP5
source organism Mus musculus
molecule tags Structural genomics, unknown function
total genus 17
structure length 92
sequence length 92
ec nomenclature
pdb deposition date 2004-03-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01106 NifU NifU-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.300.130 Alpha Beta 2-Layer Sandwich GMP Synthetase; Chain A, domain 3 Fe-S cluster assembly (FSCA) 1vehA01
3CQ2A 1UWDA 3LNOA 1WCJA 2JNVA 3CQ3A 2M5HA 3UX2A 1XHJA 3CQ1A 1VEHA 2M5OA 3UX3A 2CU6A 1TH5A 2Z51A
chains in the Genus database with same CATH superfamily
4B3SC 4D4IA 4WV3A 5BSMA 1MDBA 2CU6A 3A9VA 5DV9A 4B3RC 5BSTA 5LMNC 4GS5A 4DV7C 2WP0C 4ZJZA 3VNRA 4XX2A 2PROA 1XS3A 4K0KC 4DG9A 1PU1A 4RMNA 4WS9A 5BR8C 3PBKA 4PROC 2OPLB 4RLFA 4G1IA 4G37A 3B7WA 4DV6C 1MKYA 1UKKA 2UU9C 5LMUC 1MD9A 5AE3A 1O92A 1USPA 2PT7G 4AQYC 4LF9C 2CXCA 3CW8X 1QWIA 2VSQA 1FUGA 3A9UA 3CQ2A 1IBMC 3DAYA 2MMAB 5BSVA 3E7XA 4DCSA 3KXWA 4I9FA 4NOZA 1PG4A 4DG8A 5BUQA 2KDNA 3R44A 4LF4C 1MXAA 3LGXA 5IT9D 1LCIA 3TQIA 3J81D 3L8CA 2P2FA 4GXRA 4DV2C 4OYCA 4DR7C 2P2JA 2UXDC 2D1RA 4NXMC 5H9UA 3TR3A 2YWCA 1XNRC 2EGTA 3J80D 3VNSA 3H2TA 1M6XA 4L2ZA 3RV2A 3S82A 4ODJA 4LF6C 4JI6C 4PZPA 5IFIA 1TH5A 2D28C 4TPSB 2KZFA 4NDNA 4DR6C 3R9WA 4JI0C 2M5HA 1V25A 4FUQA 1PG3A 5BSUA 5LCIA 1N32C 2P2BA 1M6XC 4I9GA 2E0GA 2YWBA 3GR0A 5BSWA 4MTNA 4JI1C 4FUTA 4DR3C 4JI7C 5CZXA 3LNVA 2P2QA 3CW9A 4DV3C 2BJOA 3K6RA 1HH2P 3GKUA 4NXNC 2HJGA 1FJGC 1WCJA 5T8TA 1T5HX 2YX1A 2P02A 4DCUA 2JNVA 1HR0C 4BC9A 2DPLA 5KYTA 3LAXA 1MXCA 1KKGA 3O2EA 4X62C 1GPMA 2D7VA 1YJ7A 3ETCA 4DUYC 1HNZC 4LF5C 3LUSA 1WF3A 2QL8A 4R0MA 2M5OA 2QW0X 3AF6A 4MH4A 2UXBC 5IWAC 3T1HC 3OTOC 4D4GA 2PN2A 1EGAA 4JYAC 3CQ3A 5K85A 2ZM6C 2HHHC 2UUBC 1LQLA 5AE2A 2ONFA 1IB8A 5CZVA 3CJEA 3IEUA 4IZ6A 4JI3C 3R9XA 4DV4C 4LF8C 1N34C 2E8FA 1P4EC 3UZ0A 5BUSA 1HNWC 1WH9A 3NI2A 3NYRA 2ASBA 4JI5C 1N36C 4L7IA 4ISBA 3VNQA 1VEHA 4OXIA 2D1TA 1PA4A 4DR4C 4RM3A 1NY8A 2QVXX 4GXQA 2UUCC 4KHPC 3UX2A 4DV5C 4YHHC 5ADZA 2JMPA 2P2MA 3GPCA 3JAMD 5A2QD 4FTFA 1N2FA 4BCAA 1XRAA 2Y27A 3AY0A 2MCQA 4K0BA 4ZLPA 1P7LA 2D27A 3IPLA 1FLOA 1MXBA 2OO4A 3DHVA 4DV0C 4DV1C 5A1GA 2WD9A 2UXCC 2MM9A 3E7WA 2KZ0A 1I94C 1XMQC 1AMUA 1ZB8A 4RVNA 2P20A 2ZZNA 4PUGA 2VQFC 2ATWA 1O93A 4LF7C 3PROC 2NCLA 3N2QA 2AYAA 3A26A 5KEIA 4IR7A 4X66C 2ZZMA 2YCBA 3LNOA 4X64C 3I07A 4RLQA 2E5LC 5JRHA 3EQ6A 1L2FA 4R1MA 2UUAC 2OPLA 4DR1C 1O9TA 4D57A 4HPVA 1HNXC 4L4QA 2BH1X 4G36A 4LE5A 4DR2C 1ULTA 1RG9A 1IBLC 4GKJC 1P4EA 4B3MC 3CQ1A 1T5DX 1ML8A 1USPB 5FLXD 3GR1A 3G7SA 3T1YC 4LFCC 4RM2A 4PUIA 3L95X 1XRCA 5A1IA 3ETOA 4GKKC 3FCEA 2D1SA 4LFBC 4JI8C 3TUFA 4JM1A 2OBVA 1BA3A 4KTVA 3I08A 4R1LA 5BURA 1O90A 3RG2A 1UWDA 4BBYA 1XRBA 2E8EA 5BSRA 4JI2C 1MDFA 2QVZX 1J5EC 4BSZA 1QM4A 4PUHA 2CY1A 5AE1A 5KYVA 1N33C 2E8CA 5E7QA 3A25A 4BC7A 3UEBA 1JOSA 1XHJA 4KTTA 3AF5A 5A19A 4DR5C 4RVOA 2V7BA 3NPDA 3EERA 4EATA 3UOWA 3UX3A 2QVYX 3C5EA 4DCVA 2Z51A 4X65C 4JV5C 5GTDA 2DHMA 4JI4C 2F4VC 4LFAC 2Y4OA 2D1QA 1NYEA 1RY2A 1VLAA 3A4IA 1XMOC 2Y4NA 2DYJA 5K8FA 1V26A 2XR1A 1IBKC 4OX9C 3NYQA 4YY3C 2E7GA 4U5YD 3TDEA 4D56A 3IEVA 4B3TC 1ZB9A 1K0RA 4DUZC 3DLPX 3N54B 4DCTA 4PHTA 2VQEC 1XNQC 2VZEA 5T8SA 3PESA 1V60A 3SO4A 3IMLA 3FCCA
chains in the Genus database with same CATH topology
3CQ2A 1UWDA 3LNOA 1WCJA 2JNVA 3CQ3A 2M5HA 3UX2A 1XHJA 3CQ1A 1VEHA 2M5OA 3UX3A 2CU6A 1TH5A 2Z51A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CQ2 A;  1UWD A;  3LNO A;  1WCJ A;  2JNV A;  3CQ3 A;  2M5H A;  3UX2 A;  1XHJ A;  3CQ1 A;  1VEH A;  2M5O A;  3UX3 A;  2CU6 A;  1TH5 A;  2Z51 A; 
#chains in the Genus database with same CATH topology
 4B3S C;  4D4I A;  4WV3 A;  5BSM A;  1MDB A;  2CU6 A;  3A9V A;  5DV9 A;  4B3R C;  5BST A;  5LMN C;  4GS5 A;  4DV7 C;  2WP0 C;  4ZJZ A;  3VNR A;  4XX2 A;  2PRO A;  1XS3 A;  4K0K C;  4DG9 A;  1PU1 A;  4RMN A;  4WS9 A;  5BR8 C;  3PBK A;  4PRO C;  2OPL B;  4RLF A;  4G1I A;  4G37 A;  3B7W A;  4DV6 C;  1MKY A;  1UKK A;  2UU9 C;  5LMU C;  1MD9 A;  5AE3 A;  1O92 A;  1USP A;  2PT7 G;  4AQY C;  4LF9 C;  2CXC A;  3CW8 X;  1QWI A;  2VSQ A;  1FUG A;  3A9U A;  3CQ2 A;  1IBM C;  3DAY A;  2MMA B;  5BSV A;  3E7X A;  4DCS A;  3KXW A;  4I9F A;  4NOZ A;  1PG4 A;  4DG8 A;  5BUQ A;  2KDN A;  3R44 A;  4LF4 C;  1MXA A;  3LGX A;  5IT9 D;  1LCI A;  3TQI A;  3J81 D;  3L8C A;  2P2F A;  4GXR A;  4DV2 C;  4OYC A;  4DR7 C;  2P2J A;  2UXD C;  2D1R A;  4NXM C;  5H9U A;  3TR3 A;  2YWC A;  1XNR C;  2EGT A;  3J80 D;  3VNS A;  3H2T A;  1M6X A;  4L2Z A;  3RV2 A;  3S82 A;  4ODJ A;  4LF6 C;  4JI6 C;  4PZP A;  5IFI A;  1TH5 A;  2D28 C;  4TPS B;  2KZF A;  4NDN A;  4DR6 C;  3R9W A;  4JI0 C;  2M5H A;  1V25 A;  4FUQ A;  1PG3 A;  5BSU A;  5LCI A;  1N32 C;  2P2B A;  1M6X C;  4I9G A;  2E0G A;  2YWB A;  3GR0 A;  5BSW A;  4MTN A;  4JI1 C;  4FUT A;  4DR3 C;  4JI7 C;  5CZX A;  3LNV A;  2P2Q A;  3CW9 A;  4DV3 C;  2BJO A;  3K6R A;  1HH2 P;  3GKU A;  4NXN C;  2HJG A;  1FJG C;  1WCJ A;  5T8T A;  1T5H X;  2YX1 A;  2P02 A;  4DCU A;  2JNV A;  1HR0 C;  4BC9 A;  2DPL A;  5KYT A;  3LAX A;  1MXC A;  1KKG A;  3O2E A;  4X62 C;  1GPM A;  2D7V A;  1YJ7 A;  3ETC A;  4DUY C;  1HNZ C;  4LF5 C;  3LUS A;  1WF3 A;  2QL8 A;  4R0M A;  2M5O A;  2QW0 X;  3AF6 A;  4MH4 A;  2UXB C;  5IWA C;  3T1H C;  3OTO C;  4D4G A;  2PN2 A;  1EGA A;  4JYA C;  3CQ3 A;  5K85 A;  2ZM6 C;  2HHH C;  2UUB C;  1LQL A;  5AE2 A;  2ONF A;  1IB8 A;  5CZV A;  3CJE A;  3IEU A;  4IZ6 A;  4JI3 C;  3R9X A;  4DV4 C;  4LF8 C;  1N34 C;  2E8F A;  1P4E C;  3UZ0 A;  5BUS A;  1HNW C;  1WH9 A;  3NI2 A;  3NYR A;  2ASB A;  4JI5 C;  1N36 C;  4L7I A;  4ISB A;  3VNQ A;  1VEH A;  4OXI A;  2D1T A;  1PA4 A;  4DR4 C;  4RM3 A;  1NY8 A;  2QVX X;  4GXQ A;  2UUC C;  4KHP C;  3UX2 A;  4DV5 C;  4YHH C;  5ADZ A;  2JMP A;  2P2M A;  3GPC A;  3JAM D;  5A2Q D;  4FTF A;  1N2F A;  4BCA A;  1XRA A;  2Y27 A;  3AY0 A;  2MCQ A;  4K0B A;  4ZLP A;  1P7L A;  2D27 A;  3IPL A;  1FLO A;  1MXB A;  2OO4 A;  3DHV A;  4DV0 C;  4DV1 C;  5A1G A;  2WD9 A;  2UXC C;  2MM9 A;  3E7W A;  2KZ0 A;  1I94 C;  1XMQ C;  1AMU A;  1ZB8 A;  4RVN A;  2P20 A;  2ZZN A;  4PUG A;  2VQF C;  2ATW A;  1O93 A;  4LF7 C;  3PRO C;  2NCL A;  3N2Q A;  2AYA A;  3A26 A;  5KEI A;  4IR7 A;  4X66 C;  2ZZM A;  2YCB A;  3LNO A;  4X64 C;  3I07 A;  4RLQ A;  2E5L C;  5JRH A;  3EQ6 A;  1L2F A;  4R1M A;  2UUA C;  2OPL A;  4DR1 C;  1O9T A;  4D57 A;  4HPV A;  1HNX C;  4L4Q A;  2BH1 X;  4G36 A;  4LE5 A;  4DR2 C;  1ULT A;  1RG9 A;  1IBL C;  4GKJ C;  1P4E A;  4B3M C;  3CQ1 A;  1T5D X;  1ML8 A;  1USP B;  5FLX D;  3GR1 A;  3G7S A;  3T1Y C;  4LFC C;  4RM2 A;  4PUI A;  3L95 X;  1XRC A;  5A1I A;  3ETO A;  4GKK C;  3FCE A;  2D1S A;  4LFB C;  4JI8 C;  3TUF A;  4JM1 A;  2OBV A;  1BA3 A;  4KTV A;  3I08 A;  4R1L A;  5BUR A;  1O90 A;  3RG2 A;  1UWD A;  4BBY A;  1XRB A;  2E8E A;  5BSR A;  4JI2 C;  1MDF A;  2QVZ X;  1J5E C;  4BSZ A;  1QM4 A;  4PUH A;  2CY1 A;  5AE1 A;  5KYV A;  1N33 C;  2E8C A;  5E7Q A;  3A25 A;  4BC7 A;  3UEB A;  1JOS A;  1XHJ A;  4KTT A;  3AF5 A;  5A19 A;  4DR5 C;  4RVO A;  2V7B A;  3NPD A;  3EER A;  4EAT A;  3UOW A;  3UX3 A;  2QVY X;  3C5E A;  4DCV A;  2Z51 A;  4X65 C;  4JV5 C;  5GTD A;  2DHM A;  4JI4 C;  2F4V C;  4LFA C;  2Y4O A;  2D1Q A;  1NYE A;  1RY2 A;  1VLA A;  3A4I A;  1XMO C;  2Y4N A;  2DYJ A;  5K8F A;  1V26 A;  2XR1 A;  1IBK C;  4OX9 C;  3NYQ A;  4YY3 C;  2E7G A;  4U5Y D;  3TDE A;  4D56 A;  3IEV A;  4B3T C;  1ZB9 A;  1K0R A;  4DUZ C;  3DLP X;  3N54 B;  4DCT A;  4PHT A;  2VQE C;  1XNQ C;  2VZE A;  5T8S A;  3PES A;  1V60 A;  3SO4 A;  3IML A;  3FCC A; 
#chains in the Genus database with same CATH homology
 3CQ2 A;  1UWD A;  3LNO A;  1WCJ A;  2JNV A;  3CQ3 A;  2M5H A;  3UX2 A;  1XHJ A;  3CQ1 A;  1VEH A;  2M5O A;  3UX3 A;  2CU6 A;  1TH5 A;  2Z51 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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