The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
42
|
sequence length |
174
|
structure length |
174
|
Chain Sequence |
b'ACELPECQEDAGNKVCSLQCNNHACGWDGGDCSLNFNDPWKNCTQSLQCWKYFSDGHCDSQCNSAGCLFDGFDCQRAEGQCNPLYDQYCKDHFSDGHCDQGCNSAECEWDGLDCAEHVPERLAAGTLVVVVLMPPEQLRNSSFHFLRELSRVLHTNVVFKRDAHGQQMIFPYYG'
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Effects of S1 cleavage on the structure, surface export, and signaling activity of human Notch1 and Notch2.
pubmed doi rcsb |
| molecule keywords |
Neurogenic locus notch homolog protein 1
|
| source organism |
Homo sapiens
|
| molecule tags |
Signaling protein
|
| total genus |
42
|
| structure length |
174
|
| sequence length |
174
|
| chains with identical sequence |
C
|
| ec nomenclature | |
| pdb deposition date | 2009-06-24 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00066 | Notch | LNR domain |
| A | PF06816 | NOD | NOTCH protein |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | GMP Synthetase; Chain A, domain 3 | GMP Synthetase; Chain A, domain 3 | ||
| Alpha Beta | 2-Layer Sandwich | GMP Synthetase; Chain A, domain 3 | GMP Synthetase; Chain A, domain 3 |
#chains in the Genus database with same CATH superfamily 3I08 A; #chains in the Genus database with same CATH topology 1XS3 A; 4ODJ A; 1FUG A; 3VNS A; 1O90 A; 1ULT A; 2HHH C; 3I08 A; 4RVO A; 5A1G A; 4DUY C; 1XNQ C; 3B7W A; 4EAT A; 3A4I A; 2ZM6 C; 2ONF A; 2QVY X; 4DR3 C; 4JI8 C; 3TR3 A; 4PRO C; 4BC9 A; 3OTO C; 3L95 X; 3LUS A; 2PN2 A; 3VNQ A; 2E7G A; 4WV3 A; 3S82 A; 5KEI A; 4I9G A; 4IZ6 A; 1I94 C; 2P02 A; 3NYR A; 3LGX A; 2D27 A; 3G7S A; 2QVX X; 1PG4 A; 4KTT A; 1N33 C; 3TDE A; 4D4I A; 4KTV A; 3R9W A; 5IT9 D; 5IWA C; 2VQE C; 1QM4 A; 3PES A; 4LFB C; 1ML8 A; 1USP B; 4IR7 A; 5LMU C; 3TQI A; 1PG3 A; 2WD9 A; 1GPM A; 1XMO C; 2UXB C; 2BJO A; 5K85 A; 1HNX C; 3I07 A; 1HR0 C; 2KZF A; 2P2M A; 4DV5 C; 3CW8 X; 3E7W A; 4LFA C; 4BCA A; 4L7I A; 4NXN C; 2QVZ X; 2UXC C; 2P2F A; 4L2Z A; 4DR2 C; 1V26 A; 4DR1 C; 3DLP X; 5T8T A; 3J81 D; 4RLF A; 2P20 A; 3A9U A; 3O2E A; 2WP0 C; 4NXM C; 1J5E C; 1MXA A; 3GR1 A; 4YY3 C; 4JI5 C; 5FLX D; 4DV6 C; 5BUR A; 3CQ2 A; 4JI6 C; 3A9V A; 1P4E A; 2CXC A; 3NPD A; 2UXD C; 1HNZ C; 5BSW A; 2UUC C; 2YWC A; 4JYA C; 4K0B A; 4PHT A; 4X62 C; 4NOZ A; 4D57 A; 2E8E A; 3RG2 A; 1V60 A; 1PU1 A; 4X65 C; 4YHH C; 1WH9 A; 3IEV A; 4HPV A; 4DV1 C; 3R44 A; 1XRB A; 4D56 A; 2D1S A; 3UOW A; 4JV5 C; 3CQ1 A; 5KYT A; 1YJ7 A; 2M5H A; 4DR6 C; 2D28 C; 3UZ0 A; 2P2J A; 3N54 B; 4JM1 A; 1KKG A; 1XRA A; 4LF6 C; 4PZP A; 4JI2 C; 3DAY A; 5KYV A; 1LQL A; 2KDN A; 1N36 C; 4R1M A; 1XRC A; 1MKY A; 3FCE A; 2P2Q A; 1T5H X; 4LF8 C; 4DCS A; 5LCI A; 5BST A; 4DCU A; 3A25 A; 5A1I A; 5H9U A; 4U5Y D; 2DYJ A; 4DV2 C; 3AY0 A; 3T1H C; 2JNV A; 4BBY A; 1WF3 A; 1M6X C; 4GKK C; 4DR5 C; 3GPC A; 1EGA A; 4JI0 C; 4JI3 C; 4LF9 C; 1IBM C; 3PBK A; 1XHJ A; 4FUT A; 1USP A; 1FJG C; 4NDN A; 1ZB9 A; 4DCV A; 1ZB8 A; 4GXR A; 5ADZ A; 3NI2 A; 2D1T A; 4DCT A; 3JAM D; 5AE1 A; 5BSM A; 5JRH A; 5AE3 A; 4KHP C; 4DV7 C; 4D4G A; 4JI7 C; 1MDF A; 4LF5 C; 2MM9 A; 2ZZM A; 1N32 C; 1TH5 A; 3IEU A; 4AQY C; 2E8F A; 1MXC A; 4R1L A; 2PT7 G; 4G36 A; 3UX3 A; 3T1Y C; 3ETO A; 3N2Q A; 4B3S C; 1VLA A; 2PRO A; 1HH2 P; 2YCB A; 3R9X A; 3RV2 A; 5AE2 A; 4GS5 A; 4DV0 C; 2UUA C; 4X64 C; 5BUQ A; 4X66 C; 2QL8 A; 1IBK C; 2UU9 C; 1RG9 A; 4PUG A; 1O93 A; 1FLO A; 4XX2 A; 4LFC C; 1N34 C; 1MDB A; 5LMN C; 1IB8 A; 4DV3 C; 2MCQ A; 3AF5 A; 2CY1 A; 4BSZ A; 4G37 A; 4B3T C; 1MD9 A; 2VSQ A; 2D1Q A; 1WCJ A; 1XNR C; 1L2F A; 2EGT A; 3ETC A; 3KXW A; 4LE5 A; 4LF4 C; 4WS9 A; 2Z51 A; 4LF7 C; 2JMP A; 4FTF A; 1M6X A; 4MH4 A; 4OX9 C; 2F4V C; 3PRO C; 1NY8 A; 2E0G A; 3A26 A; 1P7L A; 5BR8 C; 4RMN A; 1XMQ C; 3NYQ A; 1O92 A; 2M5O A; 5A19 A; 1V25 A; 2QW0 X; 1PA4 A; 4JI1 C; 1RY2 A; 4DG9 A; 1N2F A; 4OXI A; 1T5D X; 3H2T A; 4DR4 C; 2OPL A; 4BC7 A; 2ASB A; 5CZX A; 1UKK A; 1VEH A; 5BSU A; 5BSR A; 2OPL B; 2D7V A; 3CQ3 A; 1HNW C; 5IFI A; 5A2Q D; 4K0K C; 5K8F A; 4TPS B; 3CJE A; 1UWD A; 4RVN A; 2VZE A; 2OBV A; 2VQF C; 5GTD A; 2XR1 A; 2DPL A; 3GKU A; 1QWI A; 3K6R A; 4B3R C; 2KZ0 A; 2E5L C; 5CZV A; 2Y27 A; 2E8C A; 3IPL A; 4DV4 C; 4JI4 C; 4G1I A; 5BSV A; 3UEB A; 2V7B A; 1K0R A; 2Y4O A; 3DHV A; 3J80 D; 3IML A; 4GKJ C; 3E7X A; 4B3M C; 4MTN A; 4OYC A; 3VNR A; 4DUZ C; 4ZJZ A; 4RLQ A; 3EQ6 A; 2P2B A; 4RM3 A; 2HJG A; 4ISB A; 3EER A; 3UX2 A; 3LNO A; 1NYE A; 4PUH A; 2DHM A; 4GXQ A; 4ZLP A; 5DV9 A; 5E7Q A; 5T8S A; 2CU6 A; 2MMA B; 3LAX A; 1IBL C; 2AYA A; 2D1R A; 3LNV A; 1AMU A; 3CW9 A; 2UUB C; 3FCC A; 2ATW A; 4I9F A; 2OO4 A; 2YX1 A; 2YWB A; 4PUI A; 4FUQ A; 3L8C A; 1P4E C; 1BA3 A; 4DR7 C; 3GR0 A; 1O9T A; 2ZZN A; 2BH1 X; 5BUS A; 3TUF A; 1MXB A; 2NCL A; 4DG8 A; 3AF6 A; 4L4Q A; 4R0M A; 3SO4 A; 3C5E A; 1LCI A; 4RM2 A; 2Y4N A; 1JOS A; #chains in the Genus database with same CATH homology 4ODJ A; 1FUG A; 3VNS A; 1O90 A; 1ULT A; 2HHH C; 3I08 A; 4RVO A; 5A1G A; 4DUY C; 1XNQ C; 3B7W A; 4EAT A; 3A4I A; 2ZM6 C; 2ONF A; 2QVY X; 4DR3 C; 4JI8 C; 4PRO C; 4BC9 A; 3OTO C; 3L95 X; 3LUS A; 2PN2 A; 3VNQ A; 2E7G A; 4WV3 A; 3S82 A; 5KEI A; 4I9G A; 4IZ6 A; 1I94 C; 2P02 A; 3NYR A; 3LGX A; 2D27 A; 3G7S A; 2QVX X; 1PG4 A; 4KTT A; 1N33 C; 3TDE A; 4D4I A; 4KTV A; 3R9W A; 5IT9 D; 5IWA C; 2VQE C; 1QM4 A; 3PES A; 4LFB C; 1ML8 A; 1USP B; 4IR7 A; 5LMU C; 3TQI A; 1PG3 A; 2WD9 A; 1GPM A; 1XMO C; 2UXB C; 2BJO A; 5K85 A; 1HNX C; 3I07 A; 1HR0 C; 2KZF A; 2P2M A; 4DV5 C; 3CW8 X; 3E7W A; 4LFA C; 4BCA A; 4L7I A; 4NXN C; 2QVZ X; 2UXC C; 2P2F A; 4L2Z A; 4DR2 C; 1V26 A; 4DR1 C; 3DLP X; 5T8T A; 3J81 D; 4RLF A; 2P20 A; 3A9U A; 2WP0 C; 4NXM C; 1J5E C; 1MXA A; 3GR1 A; 4YY3 C; 4JI5 C; 5FLX D; 4DV6 C; 5BUR A; 4JI6 C; 3A9V A; 2CXC A; 3NPD A; 2UXD C; 1HNZ C; 5BSW A; 2UUC C; 2YWC A; 4JYA C; 4K0B A; 4X62 C; 4PHT A; 4NOZ A; 4D57 A; 2E8E A; 3RG2 A; 4X65 C; 4YHH C; 1WH9 A; 3IEV A; 4HPV A; 4DV1 C; 3R44 A; 1XRB A; 4D56 A; 2D1S A; 3UOW A; 4JV5 C; 5KYT A; 1YJ7 A; 4DR6 C; 2D28 C; 3UZ0 A; 2P2J A; 3N54 B; 4JM1 A; 1KKG A; 1XRA A; 4LF6 C; 4PZP A; 4JI2 C; 3DAY A; 5KYV A; 1LQL A; 1N36 C; 4R1M A; 1XRC A; 1MKY A; 3FCE A; 2P2Q A; 1T5H X; 4LF8 C; 4DCS A; 5BST A; 4DCU A; 5A1I A; 5H9U A; 4U5Y D; 2DYJ A; 4DV2 C; 3T1H C; 4BBY A; 1WF3 A; 4GKK C; 4DR5 C; 3GPC A; 1EGA A; 4JI0 C; 4JI3 C; 4LF9 C; 1IBM C; 3PBK A; 4FUT A; 1USP A; 1FJG C; 4NDN A; 1ZB9 A; 4DCV A; 1ZB8 A; 4GXR A; 5ADZ A; 3NI2 A; 2D1T A; 4DCT A; 3JAM D; 5AE1 A; 5BSM A; 5JRH A; 5AE3 A; 4KHP C; 4DV7 C; 4D4G A; 4JI7 C; 1MDF A; 4LF5 C; 1N32 C; 3IEU A; 4AQY C; 2E8F A; 1MXC A; 4R1L A; 2PT7 G; 4G36 A; 3T1Y C; 3ETO A; 3N2Q A; 4B3S C; 1VLA A; 2PRO A; 1HH2 P; 2YCB A; 3R9X A; 3RV2 A; 5AE2 A; 4GS5 A; 4DV0 C; 2UUA C; 4X64 C; 5BUQ A; 4X66 C; 2QL8 A; 1IBK C; 2UU9 C; 1RG9 A; 1O93 A; 4XX2 A; 4LFC C; 1N34 C; 1MDB A; 5LMN C; 4DV3 C; 3AF5 A; 2CY1 A; 4BSZ A; 4G37 A; 4B3T C; 1MD9 A; 2VSQ A; 2D1Q A; 1XNR C; 1L2F A; 2EGT A; 3ETC A; 3KXW A; 4LE5 A; 4LF4 C; 4WS9 A; 4LF7 C; 2JMP A; 4FTF A; 4MH4 A; 4OX9 C; 2F4V C; 3PRO C; 2E0G A; 1P7L A; 5BR8 C; 4RMN A; 1XMQ C; 3NYQ A; 1O92 A; 5A19 A; 1V25 A; 2QW0 X; 1PA4 A; 4JI1 C; 1RY2 A; 4DG9 A; 1N2F A; 4OXI A; 1T5D X; 3H2T A; 4DR4 C; 2OPL A; 4BC7 A; 2ASB A; 5CZX A; 1UKK A; 5BSU A; 5BSR A; 2OPL B; 2D7V A; 1HNW C; 5IFI A; 5A2Q D; 4K0K C; 5K8F A; 4TPS B; 3CJE A; 4RVN A; 2VZE A; 2OBV A; 2VQF C; 5GTD A; 2XR1 A; 2DPL A; 3GKU A; 1QWI A; 4B3R C; 2E5L C; 5CZV A; 2Y27 A; 2E8C A; 3IPL A; 4DV4 C; 4JI4 C; 4G1I A; 5BSV A; 2V7B A; 1K0R A; 2Y4O A; 3DHV A; 3J80 D; 3IML A; 4GKJ C; 3E7X A; 4B3M C; 4MTN A; 4OYC A; 3VNR A; 4DUZ C; 4ZJZ A; 4RLQ A; 3EQ6 A; 2P2B A; 4RM3 A; 2HJG A; 4ISB A; 3EER A; 1NYE A; 4GXQ A; 4ZLP A; 5DV9 A; 5E7Q A; 5T8S A; 3LAX A; 1IBL C; 2AYA A; 2D1R A; 3LNV A; 1AMU A; 3CW9 A; 2UUB C; 3FCC A; 2ATW A; 4I9F A; 2OO4 A; 2YWB A; 4FUQ A; 3L8C A; 1BA3 A; 4DR7 C; 3GR0 A; 1O9T A; 2BH1 X; 5BUS A; 1MXB A; 4DG8 A; 3TUF A; 3AF6 A; 4L4Q A; 4R0M A; 3SO4 A; 3C5E A; 1LCI A; 4RM2 A; 2Y4N A; 1JOS A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
