The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
26
|
sequence length |
86
|
structure length |
86
|
Chain Sequence |
PGSMVSKSIVEERLRSMLSPQFLKVTDNSGGCGAAFNAYIVSQQFEGKGLLDRQRLVNSAIAAEMPQIHAFTMKCLTPGEWEAKNR
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
publication title |
SAD phasing using iodide ions in a high-throughput structural genomics environment.
pubmed doi rcsb |
molecule tags |
Unknown function
|
source organism |
Babesia bovis
|
molecule keywords |
BolA-like protein
|
total genus |
26
|
structure length |
86
|
sequence length |
86
|
ec nomenclature | |
pdb deposition date | 2010-07-22 |
chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
---|---|---|---|
A | PF01722 | BolA | BolA-like protein |
cath code
| Class | Architecture | Topology | Homology | Domain |
---|---|---|---|---|---|
Alpha Beta | 2-Layer Sandwich | GMP Synthetase; Chain A, domain 3 | BolA-like |
#chains in the Genus database with same CATH superfamily 1XS3 A; 5LCI A; 2NCL A; 2MCQ A; 3O2E A; 1NY8 A; 4PUH A; 2MMA B; 4PUG A; 2DHM A; 4PUI A; 2KZ0 A; 1V60 A; 3TR3 A; 2MM9 A; 2KDN A; #chains in the Genus database with same CATH topology 2D1Q A; 3H2T A; 1QM4 A; 2D7V A; 3DAY A; 2P2J A; 4YHH C; 3FCE A; 2NCL A; 4D4G A; 3A4I A; 3CQ2 A; 3VNR A; 2OPL A; 4L7I A; 4HPV A; 5BSU A; 3TQI A; 5A2Q D; 2UUA C; 3JAM D; 5LMN C; 5IFI A; 4AQY C; 3I08 A; 5AE2 A; 3E7X A; 4JI1 C; 2E8C A; 3CW9 A; 5BUR A; 2D1T A; 3I07 A; 4D4I A; 3TDE A; 2MCQ A; 1WH9 A; 2M5O A; 1N32 C; 3EQ6 A; 4RVO A; 3PRO C; 3VNQ A; 5A1G A; 3AF5 A; 3NYQ A; 5K85 A; 2XR1 A; 3IML A; 1IBK C; 2ATW A; 5AE3 A; 4WV3 A; 2OBV A; 4DCT A; 2P02 A; 5LCI A; 3TUF A; 5BSW A; 1I94 C; 4PUG A; 3R9W A; 1PU1 A; 3R9X A; 4RLQ A; 4DCV A; 1K0R A; 1T5H X; 1WF3 A; 3NPD A; 4RM2 A; 2CY1 A; 1AMU A; 4R0M A; 1XNR C; 2M5H A; 2DHM A; 4NOZ A; 3T1Y C; 3C5E A; 3DLP X; 2P2F A; 1ULT A; 3B7W A; 4RM3 A; 4DR6 C; 4PUI A; 4DR1 C; 1NY8 A; 4JI6 C; 1LQL A; 5BST A; 5ADZ A; 3LUS A; 2HHH C; 4OX9 C; 4EAT A; 3ETO A; 4OYC A; 4JI3 C; 1XHJ A; 3AY0 A; 4LF6 C; 1PG4 A; 2ONF A; 2AYA A; 2PT7 G; 4ISB A; 4K0B A; 3A9U A; 1ML8 A; 3LGX A; 3PBK A; 4DV1 C; 3IEV A; 1O93 A; 1PG3 A; 2VSQ A; 5H9U A; 5BSM A; 2D1S A; 3J81 D; 2WP0 C; 1UWD A; 1XMQ C; 2CXC A; 4LFA C; 4FUT A; 1MXA A; 1IBL C; 2JMP A; 3UEB A; 3CQ1 A; 4MH4 A; 4G37 A; 2E5L C; 3L95 X; 4DV7 C; 4DR2 C; 5IT9 D; 4B3M C; 2ZM6 C; 4FTF A; 4DCS A; 2ZZN A; 1ZB8 A; 2D1R A; 3N2Q A; 3ETC A; 4BCA A; 1KKG A; 1FLO A; 4IR7 A; 1V60 A; 3RV2 A; 1FJG C; 2P2M A; 1N33 C; 2VQE C; 3CQ3 A; 1J5E C; 2UUB C; 2D28 C; 4DR3 C; 1P4E A; 3GR1 A; 1QWI A; 1V25 A; 1XS3 A; 4JM1 A; 4JI0 C; 2PRO A; 3UX3 A; 4B3R C; 3A26 A; 4DG9 A; 1O9T A; 1WCJ A; 4LE5 A; 1M6X C; 5GTD A; 3NI2 A; 1O92 A; 3GR0 A; 4GXQ A; 4I9G A; 1EGA A; 4TPS B; 1RG9 A; 5KYT A; 3DHV A; 3IPL A; 3GPC A; 2PN2 A; 2QW0 X; 3PES A; 4X65 C; 1HH2 P; 4KTV A; 4GKK C; 4GXR A; 4DR4 C; 4DCU A; 2QVY X; 4BC9 A; 5JRH A; 5BR8 C; 2Y27 A; 2YCB A; 1N2F A; 3J80 D; 4XX2 A; 1IB8 A; 4YY3 C; 5FLX D; 1ZB9 A; 2BH1 X; 4LF7 C; 2F4V C; 4DR5 C; 4DUZ C; 4B3S C; 4KHP C; 4JI8 C; 4L4Q A; 4U5Y D; 4IZ6 A; 1GPM A; 1HNW C; 3VNS A; 4BC7 A; 3RG2 A; 2V7B A; 4ZJZ A; 4PZP A; 4L2Z A; 5K8F A; 3L8C A; 4DV0 C; 1FUG A; 3LAX A; 3FCC A; 2VQF C; 4RLF A; 2E7G A; 3UX2 A; 4JV5 C; 1IBM C; 5T8S A; 2QVZ X; 1XRA A; 1XMO C; 5T8T A; 4JI4 C; 4LF8 C; 1LCI A; 1UKK A; 2ZZM A; 2QVX X; 2EGT A; 3IEU A; 5LMU C; 3GKU A; 1MXC A; 2CU6 A; 4NDN A; 2VZE A; 1VEH A; 3SO4 A; 1JOS A; 1NYE A; 4KTT A; 2UUC C; 4NXM C; 2KDN A; 2E8E A; 4LF9 C; 4JYA C; 3O2E A; 1VLA A; 1RY2 A; 2BJO A; 4BBY A; 4X62 C; 4JI2 C; 3TR3 A; 5BUQ A; 4GKJ C; 2HJG A; 4ZLP A; 3A9V A; 4DV5 C; 3NYR A; 3UOW A; 1PA4 A; 4DV4 C; 2P2Q A; 5BUS A; 2Y4O A; 4X64 C; 4PHT A; 3E7W A; 2UXC C; 2YWB A; 5BSV A; 2YWC A; 4OXI A; 4LF5 C; 5KEI A; 1XRC A; 2P20 A; 4B3T C; 5CZV A; 3R44 A; 2KZF A; 4DUY C; 4BSZ A; 3KXW A; 4D57 A; 3LNO A; 2WD9 A; 4R1M A; 4DV2 C; 3T1H C; 3S82 A; 2P2B A; 4MTN A; 4DV3 C; 4FUQ A; 1XRB A; 3AF6 A; 1USP A; 5CZX A; 1MDF A; 2D27 A; 2DPL A; 4I9F A; 1L2F A; 2OO4 A; 4WS9 A; 2Z51 A; 4K0K C; 4DR7 C; 2DYJ A; 1BA3 A; 4PUH A; 1MKY A; 1MDB A; 2MM9 A; 4PRO C; 4RVN A; 1N36 C; 3G7S A; 3UZ0 A; 4ODJ A; 1TH5 A; 5E7Q A; 4LF4 C; 2ASB A; 4X66 C; 5KYV A; 4DV6 C; 2UXD C; 3EER A; 4JI5 C; 5DV9 A; 1HR0 C; 3LNV A; 4D56 A; 1V26 A; 1M6X A; 2UU9 C; 3A25 A; 5A19 A; 1MXB A; 2OPL B; 1HNZ C; 3CJE A; 4G1I A; 4NXN C; 1T5D X; 2MMA B; 3K6R A; 3OTO C; 5AE1 A; 2Y4N A; 2E8F A; 1O90 A; 1P7L A; 4LFC C; 4LFB C; 5BSR A; 5A1I A; 1YJ7 A; 1N34 C; 4G36 A; 1XNQ C; 1USP B; 4R1L A; 3CW8 X; 4RMN A; 1P4E C; 5IWA C; 2E0G A; 4DG8 A; 4GS5 A; 3N54 B; 1HNX C; 1MD9 A; 2JNV A; 2QL8 A; 2YX1 A; 4JI7 C; 2KZ0 A; 2UXB C; #chains in the Genus database with same CATH homology 1XS3 A; 5LCI A; 2NCL A; 2MCQ A; 3O2E A; 1NY8 A; 4PUH A; 2MMA B; 4PUG A; 2DHM A; 4PUI A; 2KZ0 A; 1V60 A; 3TR3 A; 2MM9 A; 2KDN A;
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