1XS3A

Solution structure analysis of the xc975 protein
Total Genus 12
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
80
structure length
80
Chain Sequence
MRKRPLDAETIRKLIESGLPEARVDVQGEDGVHFEATVVSPAFVGKAPLARHRMVYATLGELMGGAIHALQLKTLTPDEA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords hypothetical protein XC975
publication title Letter to the Editor: NMR structure note - Solution structure of a bacterial BolA-like protein XC975 from a plant pathogen Xanthomonas campestris pv. campestris
pubmed doi rcsb
molecule tags Structural genomics, unknown function
total genus 12
structure length 80
sequence length 80
ec nomenclature
pdb deposition date 2004-10-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01722 BolA BolA-like protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.300.90 Alpha Beta 2-Layer Sandwich GMP Synthetase; Chain A, domain 3 BolA-like 1xs3A01
5LCIA 4PUHA 2MCQA 3TR3A 2MM9A 2NCLA 4PUGA 1XS3A 2KDNA 2KZ0A 2DHMA 1NY8A 1V60A 4PUIA 3O2EA 2MMAB
chains in the Genus database with same CATH superfamily
4OXIA 2VZEA 3UOWA 5BSUA 3PBKA 3LUSA 4DV6C 4LF9C 2UXCC 4X66C 1IBKC 3PROC 4DR5C 2MCQA 4GKKC 4LFAC 4BC7A 4BC9A 1O9TA 5KEIA 4R0MA 3SO4A 2E8CA 4R1MA 5BUSA 4I9FA 5BUQA 4JI0C 1MXBA 2E8EA 4BBYA 1O90A 5T8SA 4L2ZA 2QVYX 3IMLA 4DR4C 1FJGC 3RG2A 2HJGA 4JYAC 3A25A 2D1TA 2F4VC 4I9GA 4JI7C 2WD9A 2QW0X 1XNRC 3AF5A 4DV1C 1I94C 1PU1A 1HR0C 3TDEA 2BJOA 4OYCA 1J5EC 3NI2A 4DR7C 3UEBA 1M6XC 1IBMC 1XHJA 3S82A 3FCEA 5BSRA 5K8FA 4DG9A 4G36A 1P7LA 4L4QA 1P4EC 2MMAB 4DR3C 5BSWA 1HH2P 3UZ0A 2OO4A 2ZZMA 3E7WA 3CQ2A 5CZVA 2YWBA 1T5DX 4TPSB 1RY2A 1QWIA 2OPLA 4JM1A 4DV0C 4DV2C 1XS3A 4DR2C 3NYQA 1WF3A 2Y27A 4B3TC 2ASBA 1VEHA 4ISBA 2Y4OA 4MH4A 1BA3A 4GXQA 3UX2A 3OTOC 4FUQA 2P2BA 2MM9A 3I07A 2QL8A 4WS9A 4DG8A 3EQ6A 1KKGA 4JI2C 4PROC 5BSTA 2UUBC 4LF5C 4DCTA 2JMPA 4IZ6A 1QM4A 5BSMA 4D4IA 1ML8A 4BSZA 5K85A 5FLXD 2D1SA 4LE5A 4KTTA 2Y4NA 3GKUA 2XR1A 3JAMD 2PT7G 3CW8X 1O92A 3CW9A 4DUZC 2OBVA 2YWCA 1USPB 4B3SC 2UXDC 4GKJC 1L2FA 1JOSA 4G1IA 4GXRA 2P02A 1RG9A 2UUCC 3IPLA 3DLPX 2NCLA 5H9UA 5JRHA 2P2FA 1M6XA 2E0GA 4KTVA 1IBLC 4R1LA 1MKYA 4D4GA 3GR0A 3AY0A 4EATA 4WV3A 1T5HX 1HNXC 2P20A 1P4EA 4BCAA 4KHPC 3ETCA 2VQFC 1YJ7A 2BH1X 2D27A 2VQEC 3NYRA 2WP0C 1NY8A 5KYVA 3TUFA 3NPDA 2QVZX 3IEUA 4LFBC 3IEVA 4GS5A 5BSVA 1AMUA 4NOZA 2D1RA 4K0BA 1VLAA 3LGXA 4NDNA 5BURA 4X62C 2E8FA 2D7VA 3TQIA 3K6RA 5LMUC 4DR1C 5LCIA 1N34C 2PROA 1HNZC 3A26A 1IB8A 1MD9A 2CY1A 2ATWA 4JI6C 1UWDA 4ZLPA 1MXCA 4DCSA 3CJEA 4LF6C 5E7QA 1XRAA 4DV4C 1GPMA 3J80D 4DUYC 3VNRA 4DR6C 4D56A 3VNQA 2DYJA 3G7SA 2P2JA 1XNQC 2D28C 3T1YC 4G37A 4IR7A 4LF7C 4LF4C 1N36C 3A9UA 5GTDA 4JI1C 5BR8C 5IT9D 2HHHC 3CQ3A 2ZM6C 3A4IA 4PZPA 3CQ1A 1N32C 3LNOA 3LAXA 5ADZA 5KYTA 2V7BA 1HNWC 4PUIA 3J81D 2ZZNA 4JV5C 4JI4C 3KXWA 4HPVA 5A19A 4FTFA 4PUGA 5CZXA 1WH9A 1K0RA 5IWAC 1PA4A 1V60A 3H2TA 1XRBA 1ZB9A 3A9VA 4NXNC 4DV3C 1FLOA 3PESA 4FUTA 4RM3A 4PUHA 3I08A 1LCIA 2YX1A 4RM2A 1V26A 4ZJZA 4ODJA 3GR1A 1USPA 3VNSA 2JNVA 1EGAA 2AYAA 4LFCC 3EERA 3AF6A 1TH5A 5AE1A 5A1IA 5T8TA 1LQLA 1N33C 2PN2A 3N2QA 4NXMC 2CU6A 4AQYC 4OX9C 1N2FA 3O2EA 2UXBC 4JI3C 2E5LC 1PG4A 2KZ0A 2Z51A 2CXCA 3TR3A 4LF8C 4L7IA 3N54B 3FCCA 4B3RC 4RMNA 3R9XA 2M5HA 1WCJA 1PG3A 2P2MA 3B7WA 3E7XA 3L8CA 4K0KC 4DCVA 2E7GA 4U5YD 2M5OA 3UX3A 4PHTA 3R44A 5DV9A 4JI5C 2DPLA 1V25A 2OPLB 4B3MC 1MXAA 3RV2A 4RLQA 1O93A 2P2QA 4DV5C 3LNVA 2ONFA 4DCUA 3C5EA 2KZFA 3GPCA 2KDNA 2EGTA 5IFIA 4DV7C 1XRCA 1XMQC 4RVOA 1FUGA 4RVNA 2UU9C 5AE2A 3T1HC 4X65C 4XX2A 5LMNC 3L95X 1MDBA 1ZB8A 4JI8C 3R9WA 4MTNA 2VSQA 1MDFA 1ULTA 2QVXX 1UKKA 4RLFA 4YY3C 1XMOC 5AE3A 5A2QD 3ETOA 2UUAC 3DHVA 4D57A 4X64C 2D1QA 2YCBA 2DHMA 3DAYA 4YHHC 1NYEA 5A1GA
chains in the Genus database with same CATH topology
5LCIA 4PUHA 2MCQA 3TR3A 2MM9A 2NCLA 4PUGA 1XS3A 2KDNA 2KZ0A 2DHMA 1NY8A 1V60A 4PUIA 3O2EA 2MMAB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5LCI A;  4PUH A;  2MCQ A;  3TR3 A;  2MM9 A;  2NCL A;  4PUG A;  1XS3 A;  2KDN A;  2KZ0 A;  2DHM A;  1NY8 A;  1V60 A;  4PUI A;  3O2E A;  2MMA B; 
#chains in the Genus database with same CATH topology
 4OXI A;  2VZE A;  3UOW A;  5BSU A;  3PBK A;  3LUS A;  4DV6 C;  4LF9 C;  2UXC C;  4X66 C;  1IBK C;  3PRO C;  4DR5 C;  2MCQ A;  4GKK C;  4LFA C;  4BC7 A;  4BC9 A;  1O9T A;  5KEI A;  4R0M A;  3SO4 A;  2E8C A;  4R1M A;  5BUS A;  4I9F A;  5BUQ A;  4JI0 C;  1MXB A;  2E8E A;  4BBY A;  1O90 A;  5T8S A;  4L2Z A;  2QVY X;  3IML A;  4DR4 C;  1FJG C;  3RG2 A;  2HJG A;  4JYA C;  3A25 A;  2D1T A;  2F4V C;  4I9G A;  4JI7 C;  2WD9 A;  2QW0 X;  1XNR C;  3AF5 A;  4DV1 C;  1I94 C;  1PU1 A;  1HR0 C;  3TDE A;  2BJO A;  4OYC A;  1J5E C;  3NI2 A;  4DR7 C;  3UEB A;  1M6X C;  1IBM C;  1XHJ A;  3S82 A;  3FCE A;  5BSR A;  5K8F A;  4DG9 A;  4G36 A;  1P7L A;  4L4Q A;  1P4E C;  2MMA B;  4DR3 C;  5BSW A;  1HH2 P;  3UZ0 A;  2OO4 A;  2ZZM A;  3E7W A;  3CQ2 A;  5CZV A;  2YWB A;  1T5D X;  4TPS B;  1RY2 A;  1QWI A;  2OPL A;  4JM1 A;  4DV0 C;  4DV2 C;  1XS3 A;  4DR2 C;  3NYQ A;  1WF3 A;  2Y27 A;  4B3T C;  2ASB A;  1VEH A;  4ISB A;  2Y4O A;  4MH4 A;  1BA3 A;  4GXQ A;  3UX2 A;  3OTO C;  4FUQ A;  2P2B A;  2MM9 A;  3I07 A;  2QL8 A;  4WS9 A;  4DG8 A;  3EQ6 A;  1KKG A;  4JI2 C;  4PRO C;  5BST A;  2UUB C;  4LF5 C;  4DCT A;  2JMP A;  4IZ6 A;  1QM4 A;  5BSM A;  4D4I A;  1ML8 A;  4BSZ A;  5K85 A;  5FLX D;  2D1S A;  4LE5 A;  4KTT A;  2Y4N A;  3GKU A;  2XR1 A;  3JAM D;  2PT7 G;  3CW8 X;  1O92 A;  3CW9 A;  4DUZ C;  2OBV A;  2YWC A;  1USP B;  4B3S C;  2UXD C;  4GKJ C;  1L2F A;  1JOS A;  4G1I A;  4GXR A;  2P02 A;  1RG9 A;  2UUC C;  3IPL A;  3DLP X;  2NCL A;  5H9U A;  5JRH A;  2P2F A;  1M6X A;  2E0G A;  4KTV A;  1IBL C;  4R1L A;  1MKY A;  4D4G A;  3GR0 A;  3AY0 A;  4EAT A;  4WV3 A;  1T5H X;  1HNX C;  2P20 A;  1P4E A;  4BCA A;  4KHP C;  3ETC A;  2VQF C;  1YJ7 A;  2BH1 X;  2D27 A;  2VQE C;  3NYR A;  2WP0 C;  1NY8 A;  5KYV A;  3TUF A;  3NPD A;  2QVZ X;  3IEU A;  4LFB C;  3IEV A;  4GS5 A;  5BSV A;  1AMU A;  4NOZ A;  2D1R A;  4K0B A;  1VLA A;  3LGX A;  4NDN A;  5BUR A;  4X62 C;  2E8F A;  2D7V A;  3TQI A;  3K6R A;  5LMU C;  4DR1 C;  5LCI A;  1N34 C;  2PRO A;  1HNZ C;  3A26 A;  1IB8 A;  1MD9 A;  2CY1 A;  2ATW A;  4JI6 C;  1UWD A;  4ZLP A;  1MXC A;  4DCS A;  3CJE A;  4LF6 C;  5E7Q A;  1XRA A;  4DV4 C;  1GPM A;  3J80 D;  4DUY C;  3VNR A;  4DR6 C;  4D56 A;  3VNQ A;  2DYJ A;  3G7S A;  2P2J A;  1XNQ C;  2D28 C;  3T1Y C;  4G37 A;  4IR7 A;  4LF7 C;  4LF4 C;  1N36 C;  3A9U A;  5GTD A;  4JI1 C;  5BR8 C;  5IT9 D;  2HHH C;  3CQ3 A;  2ZM6 C;  3A4I A;  4PZP A;  3CQ1 A;  1N32 C;  3LNO A;  3LAX A;  5ADZ A;  5KYT A;  2V7B A;  1HNW C;  4PUI A;  3J81 D;  2ZZN A;  4JV5 C;  4JI4 C;  3KXW A;  4HPV A;  5A19 A;  4FTF A;  4PUG A;  5CZX A;  1WH9 A;  1K0R A;  5IWA C;  1PA4 A;  1V60 A;  3H2T A;  1XRB A;  1ZB9 A;  3A9V A;  4NXN C;  4DV3 C;  1FLO A;  3PES A;  4FUT A;  4RM3 A;  4PUH A;  3I08 A;  1LCI A;  2YX1 A;  4RM2 A;  1V26 A;  4ZJZ A;  4ODJ A;  3GR1 A;  1USP A;  3VNS A;  2JNV A;  1EGA A;  2AYA A;  4LFC C;  3EER A;  3AF6 A;  1TH5 A;  5AE1 A;  5A1I A;  5T8T A;  1LQL A;  1N33 C;  2PN2 A;  3N2Q A;  4NXM C;  2CU6 A;  4AQY C;  4OX9 C;  1N2F A;  3O2E A;  2UXB C;  4JI3 C;  2E5L C;  1PG4 A;  2KZ0 A;  2Z51 A;  2CXC A;  3TR3 A;  4LF8 C;  4L7I A;  3N54 B;  3FCC A;  4B3R C;  4RMN A;  3R9X A;  2M5H A;  1WCJ A;  1PG3 A;  2P2M A;  3B7W A;  3E7X A;  3L8C A;  4K0K C;  4DCV A;  2E7G A;  4U5Y D;  2M5O A;  3UX3 A;  4PHT A;  3R44 A;  5DV9 A;  4JI5 C;  2DPL A;  1V25 A;  2OPL B;  4B3M C;  1MXA A;  3RV2 A;  4RLQ A;  1O93 A;  2P2Q A;  4DV5 C;  3LNV A;  2ONF A;  4DCU A;  3C5E A;  2KZF A;  3GPC A;  2KDN A;  2EGT A;  5IFI A;  4DV7 C;  1XRC A;  1XMQ C;  4RVO A;  1FUG A;  4RVN A;  2UU9 C;  5AE2 A;  3T1H C;  4X65 C;  4XX2 A;  5LMN C;  3L95 X;  1MDB A;  1ZB8 A;  4JI8 C;  3R9W A;  4MTN A;  2VSQ A;  1MDF A;  1ULT A;  2QVX X;  1UKK A;  4RLF A;  4YY3 C;  1XMO C;  5AE3 A;  5A2Q D;  3ETO A;  2UUA C;  3DHV A;  4D57 A;  4X64 C;  2D1Q A;  2YCB A;  2DHM A;  3DAY A;  4YHH C;  1NYE A;  5A1G A; 
#chains in the Genus database with same CATH homology
 5LCI A;  4PUH A;  2MCQ A;  3TR3 A;  2MM9 A;  2NCL A;  4PUG A;  1XS3 A;  2KDN A;  2KZ0 A;  2DHM A;  1NY8 A;  1V60 A;  4PUI A;  3O2E A;  2MMA B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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