1XS3A

Solution structure analysis of the xc975 protein
Total Genus 12
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
80
structure length
80
Chain Sequence
MRKRPLDAETIRKLIESGLPEARVDVQGEDGVHFEATVVSPAFVGKAPLARHRMVYATLGELMGGAIHALQLKTLTPDEA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
publication title Letter to the Editor: NMR structure note - Solution structure of a bacterial BolA-like protein XC975 from a plant pathogen Xanthomonas campestris pv. campestris
pubmed doi rcsb
molecule keywords hypothetical protein XC975
total genus 12
structure length 80
sequence length 80
ec nomenclature
pdb deposition date 2004-10-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01722 BolA BolA-like protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.300.90 Alpha Beta 2-Layer Sandwich GMP Synthetase; Chain A, domain 3 BolA-like 1xs3A01
4PUGA 4PUHA 5LCIA 4PUIA 2KZ0A 1XS3A 1NY8A 2KDNA 3TR3A 2NCLA 2MMAB 2MM9A 2MCQA 3O2EA 2DHMA 1V60A
chains in the Genus database with same CATH superfamily
1LCIA 4PUGA 3CW9A 4DCSA 1QWIA 2BJOA 4BBYA 3LAXA 5BSWA 5BSTA 2DYJA 3LNOA 5A1IA 1XRBA 4R1MA 2PN2A 4MH4A 4DG8A 4R0MA 4B3TC 2JMPA 3A4IA 4BC9A 4ISBA 1RG9A 2WP0C 4U5YD 5T8TA 3L95X 5K85A 3EERA 5JRHA 4I9GA 4LFCC 3VNSA 4BCAA 1IBLC 4K0BA 3H2TA 3LGXA 4JYAC 4JI3C 2E7GA 1K0RA 1V25A 4IZ6A 1N36C 4JI8C 1XMOC 2VSQA 4LF5C 1O93A 3CJEA 1P7LA 3I08A 4GXRA 5KYTA 4GXQA 2OPLA 5FLXD 2OO4A 4DR4C 1AMUA 1MXAA 3UOWA 4DR6C 1PG4A 2YCBA 4KHPC 3NI2A 1P4EA 2UUCC 3J80D 4DR7C 5ADZA 1KKGA 4JV5C 3GR1A 1UKKA 3JAMD 3G7SA 3IEUA 1T5HX 4RVOA 4WV3A 5A19A 4HPVA 3PBKA 4NOZA 2VQFC 3AF5A 4GKJC 3UEBA 4G36A 3ETOA 4X64C 4DV4C 1HNXC 5BSUA 2E8CA 5DV9A 3UZ0A 1HH2P 4XX2A 4NXNC 4B3MC 5CZVA 4D4IA 2HHHC 2HJGA 5LCIA 4YY3C 2ZZNA 4RLQA 5H9UA 1QM4A 2M5HA 5BURA 4L2ZA 3N2QA 2Y4NA 4DCUA 2MCQA 4RMNA 2E0GA 4GKKC 5BUQA 3CW8X 3IPLA 4I9FA 1WCJA 2UU9C 4L7IA 2D1RA 4RVNA 2P2MA 4JI7C 1RY2A 3TUFA 4DCTA 2PT7G 2XR1A 3LNVA 5AE1A 2DHMA 4ZLPA 2QL8A 4LF9C 2UUBC 3TDEA 3VNQA 1ZB9A 1WH9A 4RM3A 1VEHA 1J5EC 1ZB8A 1UWDA 2P2JA 2P2BA 4JI4C 4BC7A 3I07A 1XRCA 1MKYA 4FTFA 4D56A 3IMLA 3DAYA 2PROA 3RG2A 1HNWC 4JI2C 1M6XA 2OBVA 3K6RA 2P2QA 4OX9C 3O2EA 4X65C 2F4VC 4RLFA 4DR2C 4L4QA 1T5DX 1WF3A 1I94C 2D7VA 5T8SA 2ZM6C 3UX2A 1XMQC 1ULTA 4GS5A 3A9UA 4OYCA 4LF6C 1IBMC 5IWAC 2VQEC 4DUYC 1YJ7A 2E8FA 4PUHA 2CU6A 3AF6A 4R1LA 4FUQA 2QVYX 3VNRA 4DV0C 2D1TA 1M6XC 3CQ1A 2KZ0A 2UXDC 1N34C 5BUSA 1NYEA 3NPDA 4D4GA 2QW0X 3NYRA 2EGTA 3ETCA 4ODJA 1IB8A 3IEVA 4DV3C 3NYQA 3E7XA 4MTNA 4JI6C 1XHJA 3A26A 1IBKC 2D1SA 2QVZX 5AE3A 2BH1X 4LF4C 1NY8A 1PU1A 4WS9A 1ML8A 4LE5A 2YWCA 2DPLA 3R9XA 4X66C 3PESA 4KTTA 5BSRA 2MMAB 5KEIA 1V26A 3PROC 3C5EA 4DV7C 4KTVA 3E7WA 4AQYC 1MXCA 1EGAA 3GPCA 3DHVA 2P02A 2WD9A 4B3SC 4EATA 5A1GA 4DG9A 4NDNA 3SO4A 1LQLA 1V60A 2AYAA 2QVXX 2OPLB 2ONFA 1MDBA 1XNRC 2UXCC 1O9TA 1VLAA 4LFBC 3T1YC 1MDFA 1FJGC 2D28C 3CQ3A 2Z51A 4JM1A 1PG3A 2P2FA 1JOSA 1HR0C 1FUGA 3A25A 2YWBA 4G37A 4D57A 1USPA 4JI1C 5IFIA 3LUSA 2MM9A 4PZPA 2Y4OA 3J81D 1GPMA 4PROC 3R44A 5A2QD 4PUIA 4ZJZA 4NXMC 4X62C 5IT9D 2ASBA 3DLPX 1O92A 3GKUA 4IR7A 3N54B 5GTDA 1XS3A 4OXIA 4TPSB 1N33C 1N2FA 4DR3C 3L8CA 3T1HC 3TR3A 2CY1A 2KZFA 2E5LC 3UX3A 2Y27A 1N32C 2M5OA 1L2FA 2P20A 3A9VA 4JI5C 1TH5A 5E7QA 2JNVA 4FUTA 5CZXA 4JI0C 3B7WA 4LFAC 4B3RC 3KXWA 3S82A 5LMUC 4YHHC 4LF8C 4DR1C 5KYVA 4BSZA 3R9WA 4LF7C 3OTOC 1PA4A 1BA3A 1P4EC 5AE2A 4PHTA 2UXBC 3TQIA 1XNQC 1XRAA 4RM2A 1HNZC 4DV6C 2VZEA 2ATWA 5K8FA 2UUAC 2V7BA 5BSVA 3RV2A 2ZZMA 4G1IA 3GR0A 5BSMA 3AY0A 4DUZC 4K0KC 3CQ2A 2KDNA 1MD9A 2NCLA 4DV5C 3FCCA 1O90A 1MXBA 2E8EA 1USPB 3FCEA 4DR5C 4DV1C 2D27A 3EQ6A 5BR8C 4DCVA 5LMNC 2D1QA 2YX1A 4DV2C 2CXCA 1FLOA
chains in the Genus database with same CATH topology
4PUGA 4PUHA 5LCIA 4PUIA 2KZ0A 1XS3A 1NY8A 2KDNA 3TR3A 2NCLA 2MMAB 2MM9A 2MCQA 3O2EA 2DHMA 1V60A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4PUG A;  4PUH A;  5LCI A;  4PUI A;  2KZ0 A;  1XS3 A;  1NY8 A;  2KDN A;  3TR3 A;  2NCL A;  2MMA B;  2MM9 A;  2MCQ A;  3O2E A;  2DHM A;  1V60 A; 
#chains in the Genus database with same CATH topology
 1LCI A;  4PUG A;  3CW9 A;  4DCS A;  1QWI A;  2BJO A;  4BBY A;  3LAX A;  5BSW A;  5BST A;  2DYJ A;  3LNO A;  5A1I A;  1XRB A;  4R1M A;  2PN2 A;  4MH4 A;  4DG8 A;  4R0M A;  4B3T C;  2JMP A;  3A4I A;  4BC9 A;  4ISB A;  1RG9 A;  2WP0 C;  4U5Y D;  5T8T A;  3L95 X;  5K85 A;  3EER A;  5JRH A;  4I9G A;  4LFC C;  3VNS A;  4BCA A;  1IBL C;  4K0B A;  3H2T A;  3LGX A;  4JYA C;  4JI3 C;  2E7G A;  1K0R A;  1V25 A;  4IZ6 A;  1N36 C;  4JI8 C;  1XMO C;  2VSQ A;  4LF5 C;  1O93 A;  3CJE A;  1P7L A;  3I08 A;  4GXR A;  5KYT A;  4GXQ A;  2OPL A;  5FLX D;  2OO4 A;  4DR4 C;  1AMU A;  1MXA A;  3UOW A;  4DR6 C;  1PG4 A;  2YCB A;  4KHP C;  3NI2 A;  1P4E A;  2UUC C;  3J80 D;  4DR7 C;  5ADZ A;  1KKG A;  4JV5 C;  3GR1 A;  1UKK A;  3JAM D;  3G7S A;  3IEU A;  1T5H X;  4RVO A;  4WV3 A;  5A19 A;  4HPV A;  3PBK A;  4NOZ A;  2VQF C;  3AF5 A;  4GKJ C;  3UEB A;  4G36 A;  3ETO A;  4X64 C;  4DV4 C;  1HNX C;  5BSU A;  2E8C A;  5DV9 A;  3UZ0 A;  1HH2 P;  4XX2 A;  4NXN C;  4B3M C;  5CZV A;  4D4I A;  2HHH C;  2HJG A;  5LCI A;  4YY3 C;  2ZZN A;  4RLQ A;  5H9U A;  1QM4 A;  2M5H A;  5BUR A;  4L2Z A;  3N2Q A;  2Y4N A;  4DCU A;  2MCQ A;  4RMN A;  2E0G A;  4GKK C;  5BUQ A;  3CW8 X;  3IPL A;  4I9F A;  1WCJ A;  2UU9 C;  4L7I A;  2D1R A;  4RVN A;  2P2M A;  4JI7 C;  1RY2 A;  3TUF A;  4DCT A;  2PT7 G;  2XR1 A;  3LNV A;  5AE1 A;  2DHM A;  4ZLP A;  2QL8 A;  4LF9 C;  2UUB C;  3TDE A;  3VNQ A;  1ZB9 A;  1WH9 A;  4RM3 A;  1VEH A;  1J5E C;  1ZB8 A;  1UWD A;  2P2J A;  2P2B A;  4JI4 C;  4BC7 A;  3I07 A;  1XRC A;  1MKY A;  4FTF A;  4D56 A;  3IML A;  3DAY A;  2PRO A;  3RG2 A;  1HNW C;  4JI2 C;  1M6X A;  2OBV A;  3K6R A;  2P2Q A;  4OX9 C;  3O2E A;  4X65 C;  2F4V C;  4RLF A;  4DR2 C;  4L4Q A;  1T5D X;  1WF3 A;  1I94 C;  2D7V A;  5T8S A;  2ZM6 C;  3UX2 A;  1XMQ C;  1ULT A;  4GS5 A;  3A9U A;  4OYC A;  4LF6 C;  1IBM C;  5IWA C;  2VQE C;  4DUY C;  1YJ7 A;  2E8F A;  4PUH A;  2CU6 A;  3AF6 A;  4R1L A;  4FUQ A;  2QVY X;  3VNR A;  4DV0 C;  2D1T A;  1M6X C;  3CQ1 A;  2KZ0 A;  2UXD C;  1N34 C;  5BUS A;  1NYE A;  3NPD A;  4D4G A;  2QW0 X;  3NYR A;  2EGT A;  3ETC A;  4ODJ A;  1IB8 A;  3IEV A;  4DV3 C;  3NYQ A;  3E7X A;  4MTN A;  4JI6 C;  1XHJ A;  3A26 A;  1IBK C;  2D1S A;  2QVZ X;  5AE3 A;  2BH1 X;  4LF4 C;  1NY8 A;  1PU1 A;  4WS9 A;  1ML8 A;  4LE5 A;  2YWC A;  2DPL A;  3R9X A;  4X66 C;  3PES A;  4KTT A;  5BSR A;  2MMA B;  5KEI A;  1V26 A;  3PRO C;  3C5E A;  4DV7 C;  4KTV A;  3E7W A;  4AQY C;  1MXC A;  1EGA A;  3GPC A;  3DHV A;  2P02 A;  2WD9 A;  4B3S C;  4EAT A;  5A1G A;  4DG9 A;  4NDN A;  3SO4 A;  1LQL A;  1V60 A;  2AYA A;  2QVX X;  2OPL B;  2ONF A;  1MDB A;  1XNR C;  2UXC C;  1O9T A;  1VLA A;  4LFB C;  3T1Y C;  1MDF A;  1FJG C;  2D28 C;  3CQ3 A;  2Z51 A;  4JM1 A;  1PG3 A;  2P2F A;  1JOS A;  1HR0 C;  1FUG A;  3A25 A;  2YWB A;  4G37 A;  4D57 A;  1USP A;  4JI1 C;  5IFI A;  3LUS A;  2MM9 A;  4PZP A;  2Y4O A;  3J81 D;  1GPM A;  4PRO C;  3R44 A;  5A2Q D;  4PUI A;  4ZJZ A;  4NXM C;  4X62 C;  5IT9 D;  2ASB A;  3DLP X;  1O92 A;  3GKU A;  4IR7 A;  3N54 B;  5GTD A;  1XS3 A;  4OXI A;  4TPS B;  1N33 C;  1N2F A;  4DR3 C;  3L8C A;  3T1H C;  3TR3 A;  2CY1 A;  2KZF A;  2E5L C;  3UX3 A;  2Y27 A;  1N32 C;  2M5O A;  1L2F A;  2P20 A;  3A9V A;  4JI5 C;  1TH5 A;  5E7Q A;  2JNV A;  4FUT A;  5CZX A;  4JI0 C;  3B7W A;  4LFA C;  4B3R C;  3KXW A;  3S82 A;  5LMU C;  4YHH C;  4LF8 C;  4DR1 C;  5KYV A;  4BSZ A;  3R9W A;  4LF7 C;  3OTO C;  1PA4 A;  1BA3 A;  1P4E C;  5AE2 A;  4PHT A;  2UXB C;  3TQI A;  1XNQ C;  1XRA A;  4RM2 A;  1HNZ C;  4DV6 C;  2VZE A;  2ATW A;  5K8F A;  2UUA C;  2V7B A;  5BSV A;  3RV2 A;  2ZZM A;  4G1I A;  3GR0 A;  5BSM A;  3AY0 A;  4DUZ C;  4K0K C;  3CQ2 A;  2KDN A;  1MD9 A;  2NCL A;  4DV5 C;  3FCC A;  1O90 A;  1MXB A;  2E8E A;  1USP B;  3FCE A;  4DR5 C;  4DV1 C;  2D27 A;  3EQ6 A;  5BR8 C;  4DCV A;  5LMN C;  2D1Q A;  2YX1 A;  4DV2 C;  2CXC A;  1FLO A; 
#chains in the Genus database with same CATH homology
 4PUG A;  4PUH A;  5LCI A;  4PUI A;  2KZ0 A;  1XS3 A;  1NY8 A;  2KDN A;  3TR3 A;  2NCL A;  2MMA B;  2MM9 A;  2MCQ A;  3O2E A;  2DHM A;  1V60 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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