The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
21
|
sequence length |
102
|
structure length |
102
|
Chain Sequence |
MSKKVTKEDVLNALKNVIDFELGLDVVSLGLVYDIQIDDQNNVKVLMTMTTPMCPLAGMILSDAEEAIKKIEGVNNVEVELTFDPPWTPERMSPELREKFGV
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Biosynthetic protein
|
| source organism |
Thermotoga maritima
|
| publication title |
NMR Structure of the Conserved Hypothetical Protein Tm0487 from Thermotoga Maritima: Implications for 216 Homologous Duf59 Proteins.
pubmed doi rcsb |
| molecule keywords |
HYPOTHETICAL PROTEIN TM0487
|
| total genus |
21
|
| structure length |
102
|
| sequence length |
102
|
| ec nomenclature | |
| pdb deposition date | 2004-02-03 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01883 | FeS_assembly_P | Iron-sulfur cluster assembly protein |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | GMP Synthetase; Chain A, domain 3 | Fe-S cluster assembly (FSCA) |
#chains in the Genus database with same CATH superfamily 1TH5 A; 1VEH A; 3UX2 A; 3LNO A; 1UWD A; 1XHJ A; 2JNV A; 3UX3 A; 3CQ3 A; 3CQ2 A; 2M5O A; 2Z51 A; 1WCJ A; 2M5H A; 3CQ1 A; 2CU6 A; #chains in the Genus database with same CATH topology 1BA3 A; 1MXB A; 4JI2 C; 4B3M C; 3AY0 A; 1XRB A; 3KXW A; 5AE3 A; 4IZ6 A; 2DYJ A; 1J5E C; 4L4Q A; 4LF7 C; 4DV7 C; 4FUT A; 1N36 C; 5IT9 D; 3UOW A; 2BJO A; 5K8F A; 3SO4 A; 3N2Q A; 3CQ2 A; 2PT7 G; 3E7W A; 5BUR A; 1EGA A; 5KYV A; 3N54 B; 4FUQ A; 2OO4 A; 1NYE A; 3VNR A; 4RLQ A; 4DV2 C; 5AE2 A; 2D27 A; 1AMU A; 1MKY A; 1O9T A; 2HJG A; 4KTT A; 1MXA A; 4ODJ A; 4JI3 C; 3VNQ A; 2D1R A; 4JI6 C; 3CW9 A; 3GPC A; 4RLF A; 4X62 C; 4XX2 A; 2M5H A; 5T8T A; 5BSW A; 1N33 C; 1HH2 P; 1I94 C; 3J81 D; 2JMP A; 1YJ7 A; 1MDF A; 5JRH A; 4DR6 C; 4L2Z A; 4JI1 C; 1XNQ C; 3DHV A; 1PA4 A; 4LF5 C; 4BCA A; 1XRA A; 2YCB A; 3UX2 A; 3LNV A; 3T1Y C; 2P2Q A; 2UUA C; 4DV3 C; 5BST A; 2E8C A; 4JI8 C; 2P02 A; 5A1G A; 5E7Q A; 1T5H X; 2UU9 C; 4NXN C; 2ZZM A; 1L2F A; 4YY3 C; 4L7I A; 1PG4 A; 5BSV A; 2XR1 A; 4YHH C; 2MMA B; 1ML8 A; 1V60 A; 3PES A; 3A26 A; 4R0M A; 4DR3 C; 3LGX A; 1XMO C; 4ZLP A; 2CXC A; 4X66 C; 2F4V C; 4D57 A; 3DAY A; 3GR1 A; 3AF5 A; 3A9U A; 2HHH C; 2QL8 A; 4R1L A; 3NI2 A; 4DR4 C; 4EAT A; 3CJE A; 4D4G A; 3J80 D; 1NY8 A; 4RVN A; 1V25 A; 3H2T A; 1N34 C; 3CQ3 A; 2UXB C; 1WF3 A; 1RG9 A; 1O93 A; 4G1I A; 3NYQ A; 4DV1 C; 3R9X A; 4LE5 A; 2QVZ X; 4PUI A; 4LF8 C; 2D1Q A; 2VQE C; 4IR7 A; 1IBK C; 3TQI A; 4B3T C; 1HNZ C; 1JOS A; 2KDN A; 3LAX A; 1P7L A; 2E7G A; 2E8F A; 3PBK A; 1ZB8 A; 4PUH A; 4WV3 A; 2V7B A; 1GPM A; 4JI0 C; 2DPL A; 3GKU A; 3FCE A; 1USP B; 4JI4 C; 1M6X A; 1XS3 A; 3L8C A; 4JM1 A; 4JV5 C; 3E7X A; 4DG9 A; 2MCQ A; 3VNS A; 2KZF A; 4BBY A; 3NPD A; 4G37 A; 4DR2 C; 4I9G A; 2VSQ A; 1KKG A; 4DCT A; 5KYT A; 4DR5 C; 2ASB A; 3IML A; 4PUG A; 4R1M A; 2AYA A; 4DR7 C; 1WCJ A; 4DCU A; 2P2J A; 2UXD C; 5IWA C; 4JYA C; 4DV6 C; 1IBL C; 1RY2 A; 1USP A; 3A25 A; 4K0K C; 1PG3 A; 4U5Y D; 3GR0 A; 4TPS B; 2P20 A; 2EGT A; 3IPL A; 4BC9 A; 4X64 C; 2CY1 A; 5DV9 A; 2D7V A; 3CQ1 A; 4KTV A; 2WP0 C; 3IEU A; 4DCV A; 1LQL A; 3NYR A; 4DUZ C; 4AQY C; 3T1H C; 2YWB A; 1UKK A; 5A2Q D; 2ONF A; 4ISB A; 1FJG C; 3EQ6 A; 2NCL A; 1HNX C; 1FUG A; 2KZ0 A; 3I07 A; 4G36 A; 1XHJ A; 2UXC C; 3A4I A; 4OXI A; 4DV0 C; 3A9V A; 1N32 C; 5A19 A; 2ZM6 C; 5A1I A; 3DLP X; 2D1S A; 2Y27 A; 4DG8 A; 2Y4N A; 5GTD A; 4B3S C; 2ZZN A; 1MD9 A; 5KEI A; 4LF6 C; 1QWI A; 4LF4 C; 2P2B A; 2QVX X; 4BSZ A; 4ZJZ A; 4FTF A; 4RVO A; 2E0G A; 2E8E A; 4X65 C; 3I08 A; 4HPV A; 3R44 A; 1O92 A; 2M5O A; 5T8S A; 4MTN A; 1XMQ C; 4LFC C; 1LCI A; 2PRO A; 3TDE A; 2QVY X; 5FLX D; 4DV4 C; 4RM3 A; 1MXC A; 4GXR A; 5LMU C; 2Y4O A; 2BH1 X; 1VEH A; 3O2E A; 3RG2 A; 1QM4 A; 4GKJ C; 2P2M A; 4OYC A; 4D56 A; 2JNV A; 2OPL B; 1O90 A; 2ATW A; 4PRO C; 5BSM A; 1P4E A; 4RM2 A; 5BUQ A; 4I9F A; 3IEV A; 4GXQ A; 1WH9 A; 3JAM D; 4PZP A; 1M6X C; 1UWD A; 4B3R C; 1P4E C; 3TUF A; 5BSR A; 1K0R A; 4DR1 C; 3ETO A; 3UEB A; 1T5D X; 3AF6 A; 4JI7 C; 3B7W A; 3OTO C; 2UUC C; 2CU6 A; 4KHP C; 3S82 A; 2P2F A; 3K6R A; 3RV2 A; 2E5L C; 2Z51 A; 5CZX A; 2OPL A; 2QW0 X; 2VQF C; 4LF9 C; 1PU1 A; 4DV5 C; 1MDB A; 3R9W A; 3FCC A; 3UX3 A; 5BSU A; 1N2F A; 2MM9 A; 4DCS A; 2D28 C; 3EER A; 2PN2 A; 4D4I A; 4LFB C; 4OX9 C; 3TR3 A; 2YWC A; 1ZB9 A; 4PHT A; 5LMN C; 4GKK C; 3UZ0 A; 4NOZ A; 5ADZ A; 1VLA A; 1IBM C; 1XNR C; 4GS5 A; 3LUS A; 2WD9 A; 4LFA C; 4NDN A; 2UUB C; 3C5E A; 4DUY C; 5IFI A; 3PRO C; 4WS9 A; 3LNO A; 5H9U A; 5AE1 A; 3ETC A; 5BR8 C; 5K85 A; 5BUS A; 2OBV A; 3CW8 X; 4MH4 A; 4RMN A; 5LCI A; 2YX1 A; 1HNW C; 3L95 X; 1XRC A; 3G7S A; 1TH5 A; 1V26 A; 5CZV A; 2VZE A; 1FLO A; 2D1T A; 4JI5 C; 2DHM A; 1IB8 A; 1HR0 C; 4NXM C; 1ULT A; 4BC7 A; 4K0B A; #chains in the Genus database with same CATH homology 1TH5 A; 1VEH A; 3UX2 A; 3LNO A; 1UWD A; 1XHJ A; 2JNV A; 3UX3 A; 3CQ3 A; 3CQ2 A; 2M5O A; 2Z51 A; 1WCJ A; 2M5H A; 3CQ1 A; 2CU6 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
