2MCQA

Nmr structure of a bola-like hypothetical protein rp812 from rickettsia prowazekii, seattle structural genomics center for infectious disease (ssgcid)
Total Genus 10
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
10
sequence length
77
structure length
77
Chain Sequence
MAISAEELEKILKKSFPSSVIKITDLVGDQDHYALEISDAQFNGLSLINQHKLVKNALSEILNKKLHSISIKTISIP
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title NMR structure of a BolA-like hypothetical protein RP812 from Rickettsia prowazekii, Seattle structural genomics center for infectious disease (SSGCID)
rcsb
molecule tags Unknown function
source organism Rickettsia prowazekii
molecule keywords Uncharacterized protein RP812
total genus 10
structure length 77
sequence length 77
ec nomenclature
pdb deposition date 2013-08-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01722 BolA BolA-like protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.300.90 Alpha Beta 2-Layer Sandwich GMP Synthetase; Chain A, domain 3 BolA-like 2mcqA01
1NY8A 2NCLA 4PUGA 2KZ0A 4PUIA 2DHMA 3TR3A 3O2EA 2MCQA 2MMAB 1XS3A 1V60A 2KDNA 2MM9A 4PUHA 5LCIA
chains in the Genus database with same CATH superfamily
1IBKC 4NDNA 1XRAA 5A19A 3R9XA 5H9UA 1N36C 2ATWA 2P2BA 2P2FA 3R44A 4LE5A 5KEIA 2OPLA 1XMOC 3AF6A 4MH4A 4YHHC 2ZZMA 1VEHA 4OYCA 1PG3A 1UWDA 4FUTA 2PT7G 2CU6A 2PN2A 4G36A 2Y27A 4BCAA 4MTNA 2OBVA 5A1GA 1MDFA 4PUHA 5LCIA 1HNZC 5BR8C 1HNXC 4GKKC 1IB8A 2UXCC 4JV5C 4LF4C 5KYTA 4LF9C 3TQIA 3A25A 2Y4NA 3E7WA 2MCQA 4RVNA 2WP0C 4JI5C 1XNQC 1YJ7A 5BSRA 3EQ6A 4K0KC 4RM2A 4JI6C 2JMPA 3A9UA 4LFCC 4DCVA 4ZJZA 2P2MA 1MXBA 4FUQA 4I9GA 1XHJA 3S82A 5E7QA 5CZXA 5BSVA 3L8CA 2OPLB 1MXCA 1ULTA 1PA4A 4PUIA 3ETOA 4GS5A 1V60A 4U5YD 2BH1X 4K0BA 2YWCA 2D1TA 2UXBC 1RY2A 1HH2P 3GR1A 3E7XA 4G37A 4GKJC 2DHMA 4EATA 1N2FA 2QW0X 4WV3A 2JNVA 4NOZA 3N54B 2P02A 4KTVA 4D4IA 4DR3C 5T8SA 4DV6C 3UOWA 5KYVA 3JAMD 3C5EA 4BC9A 4L4QA 2D27A 4YY3C 4DV2C 1P4EA 3NYRA 2ZZNA 1TH5A 4L7IA 4OXIA 5BUSA 1K0RA 4D56A 4B3MC 4LF7C 4DUZC 4R1MA 4DCUA 3PESA 1O92A 2QVYX 1M6XA 3LNVA 1O90A 1MKYA 1AMUA 2Y4OA 5LMUC 4OX9C 5DV9A 2M5OA 3ETCA 5BUQA 5AE3A 1PU1A 4JI0C 3IMLA 3IEUA 4GXRA 4DG9A 1N34C 1J5EC 1FLOA 1O93A 4LF5C 2D1QA 1N33C 4BC7A 3H2TA 3TUFA 2EGTA 4PROC 3CW8X 1O9TA 4JI7C 4RLFA 1EGAA 3R9WA 5BSMA 5ADZA 4TPSB 1KKGA 2KDNA 5K85A 2YCBA 1IBLC 2E8CA 4IR7A 1LQLA 4RMNA 1XRCA 3DAYA 4X66C 4DV7C 3RV2A 4LFAC 1HNWC 1XRBA 2P2QA 4DR5C 1V26A 1USPA 3VNRA 2QVXX 1ML8A 2F4VC 1WH9A 2ZM6C 3CW9A 3CQ2A 4L2ZA 4B3TC 1MXAA 5GTDA 4LF6C 1MD9A 5BSUA 2BJOA 5AE1A 3UX3A 4DUYC 3I08A 4BBYA 4ODJA 4NXMC 2P2JA 4FTFA 2M5HA 3GKUA 1ZB9A 5CZVA 3UEBA 3EERA 3LGXA 3OTOC 5K8FA 4LF8C 5A1IA 3UX2A 4BSZA 1T5HX 1QM4A 4DV5C 2Z51A 4I9FA 1RG9A 1WF3A 2HJGA 4AQYC 2E5LC 4DV0C 3O2EA 5BSWA 2VZEA 4B3RC 3L95X 3NI2A 1USPB 5LMNC 4JI8C 2WD9A 2V7BA 3PBKA 1UKKA 2E8EA 3FCCA 2PROA 3DHVA 3KXWA 3GR0A 2E7GA 4KHPC 2KZ0A 3AY0A 1N32C 4RVOA 3I07A 4DV3C 2P20A 2YX1A 3N2QA 3VNSA 1PG4A 2D1RA 2E8FA 4RLQA 2VQFC 4D4GA 3A4IA 2D28C 1XNRC 1T5DX 2CY1A 1P7LA 5AE2A 2UUCC 4KTTA 1WCJA 1QWIA 1IBMC 2QVZX 4JI2C 3FCEA 4B3SC 4ZLPA 1ZB8A 4DR1C 3B7WA 2D1SA 4DR6C 3TDEA 4DCTA 2KZFA 1NY8A 4WS9A 2XR1A 4ISBA 4JYAC 3TR3A 3AF5A 3LUSA 3LAXA 3SO4A 3CQ1A 1I94C 2YWBA 4X64C 4IZ6A 1LCIA 4X65C 2MMAB 2QL8A 3A26A 4RM3A 3DLPX 3NPDA 4JM1A 2HHHC 3CJEA 4PZPA 3J81D 3LNOA 4X62C 4XX2A 2DPLA 2AYAA 3IEVA 1L2FA 3A9VA 5IWAC 1V25A 2D7VA 2VQEC 4D57A 3T1YC 2VSQA 1NYEA 1XMQC 5T8TA 3G7SA 1MDBA 4DV1C 1JOSA 5JRHA 3PROC 2OO4A 4PHTA 3GPCA 5BURA 2E0GA 4JI3C 3UZ0A 4GXQA 5IFIA 4NXNC 1HR0C 2NCLA 4DV4C 4R1LA 1VLAA 4DG8A 3RG2A 4PUGA 2UU9C 4R0MA 1XS3A 1FJGC 4DR7C 1BA3A 1FUGA 2CXCA 2ASBA 3IPLA 3K6RA 5FLXD 2DYJA 3J80D 4DR4C 4JI1C 2ONFA 4HPVA 1GPMA 1P4EC 4JI4C 2UXDC 3T1HC 3CQ3A 5A2QD 4LFBC 4G1IA 4DCSA 5BSTA 2UUBC 2MM9A 3NYQA 3VNQA 2UUAC 5IT9D 1M6XC 4DR2C
chains in the Genus database with same CATH topology
1NY8A 2NCLA 4PUGA 2KZ0A 4PUIA 2DHMA 3TR3A 3O2EA 2MCQA 2MMAB 1XS3A 1V60A 2KDNA 2MM9A 4PUHA 5LCIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1NY8 A;  2NCL A;  4PUG A;  2KZ0 A;  4PUI A;  2DHM A;  3TR3 A;  3O2E A;  2MCQ A;  2MMA B;  1XS3 A;  1V60 A;  2KDN A;  2MM9 A;  4PUH A;  5LCI A; 
#chains in the Genus database with same CATH topology
 1IBK C;  4NDN A;  1XRA A;  5A19 A;  3R9X A;  5H9U A;  1N36 C;  2ATW A;  2P2B A;  2P2F A;  3R44 A;  4LE5 A;  5KEI A;  2OPL A;  1XMO C;  3AF6 A;  4MH4 A;  4YHH C;  2ZZM A;  1VEH A;  4OYC A;  1PG3 A;  1UWD A;  4FUT A;  2PT7 G;  2CU6 A;  2PN2 A;  4G36 A;  2Y27 A;  4BCA A;  4MTN A;  2OBV A;  5A1G A;  1MDF A;  4PUH A;  5LCI A;  1HNZ C;  5BR8 C;  1HNX C;  4GKK C;  1IB8 A;  2UXC C;  4JV5 C;  4LF4 C;  5KYT A;  4LF9 C;  3TQI A;  3A25 A;  2Y4N A;  3E7W A;  2MCQ A;  4RVN A;  2WP0 C;  4JI5 C;  1XNQ C;  1YJ7 A;  5BSR A;  3EQ6 A;  4K0K C;  4RM2 A;  4JI6 C;  2JMP A;  3A9U A;  4LFC C;  4DCV A;  4ZJZ A;  2P2M A;  1MXB A;  4FUQ A;  4I9G A;  1XHJ A;  3S82 A;  5E7Q A;  5CZX A;  5BSV A;  3L8C A;  2OPL B;  1MXC A;  1ULT A;  1PA4 A;  4PUI A;  3ETO A;  4GS5 A;  1V60 A;  4U5Y D;  2BH1 X;  4K0B A;  2YWC A;  2D1T A;  2UXB C;  1RY2 A;  1HH2 P;  3GR1 A;  3E7X A;  4G37 A;  4GKJ C;  2DHM A;  4EAT A;  1N2F A;  2QW0 X;  4WV3 A;  2JNV A;  4NOZ A;  3N54 B;  2P02 A;  4KTV A;  4D4I A;  4DR3 C;  5T8S A;  4DV6 C;  3UOW A;  5KYV A;  3JAM D;  3C5E A;  4BC9 A;  4L4Q A;  2D27 A;  4YY3 C;  4DV2 C;  1P4E A;  3NYR A;  2ZZN A;  1TH5 A;  4L7I A;  4OXI A;  5BUS A;  1K0R A;  4D56 A;  4B3M C;  4LF7 C;  4DUZ C;  4R1M A;  4DCU A;  3PES A;  1O92 A;  2QVY X;  1M6X A;  3LNV A;  1O90 A;  1MKY A;  1AMU A;  2Y4O A;  5LMU C;  4OX9 C;  5DV9 A;  2M5O A;  3ETC A;  5BUQ A;  5AE3 A;  1PU1 A;  4JI0 C;  3IML A;  3IEU A;  4GXR A;  4DG9 A;  1N34 C;  1J5E C;  1FLO A;  1O93 A;  4LF5 C;  2D1Q A;  1N33 C;  4BC7 A;  3H2T A;  3TUF A;  2EGT A;  4PRO C;  3CW8 X;  1O9T A;  4JI7 C;  4RLF A;  1EGA A;  3R9W A;  5BSM A;  5ADZ A;  4TPS B;  1KKG A;  2KDN A;  5K85 A;  2YCB A;  1IBL C;  2E8C A;  4IR7 A;  1LQL A;  4RMN A;  1XRC A;  3DAY A;  4X66 C;  4DV7 C;  3RV2 A;  4LFA C;  1HNW C;  1XRB A;  2P2Q A;  4DR5 C;  1V26 A;  1USP A;  3VNR A;  2QVX X;  1ML8 A;  2F4V C;  1WH9 A;  2ZM6 C;  3CW9 A;  3CQ2 A;  4L2Z A;  4B3T C;  1MXA A;  5GTD A;  4LF6 C;  1MD9 A;  5BSU A;  2BJO A;  5AE1 A;  3UX3 A;  4DUY C;  3I08 A;  4BBY A;  4ODJ A;  4NXM C;  2P2J A;  4FTF A;  2M5H A;  3GKU A;  1ZB9 A;  5CZV A;  3UEB A;  3EER A;  3LGX A;  3OTO C;  5K8F A;  4LF8 C;  5A1I A;  3UX2 A;  4BSZ A;  1T5H X;  1QM4 A;  4DV5 C;  2Z51 A;  4I9F A;  1RG9 A;  1WF3 A;  2HJG A;  4AQY C;  2E5L C;  4DV0 C;  3O2E A;  5BSW A;  2VZE A;  4B3R C;  3L95 X;  3NI2 A;  1USP B;  5LMN C;  4JI8 C;  2WD9 A;  2V7B A;  3PBK A;  1UKK A;  2E8E A;  3FCC A;  2PRO A;  3DHV A;  3KXW A;  3GR0 A;  2E7G A;  4KHP C;  2KZ0 A;  3AY0 A;  1N32 C;  4RVO A;  3I07 A;  4DV3 C;  2P20 A;  2YX1 A;  3N2Q A;  3VNS A;  1PG4 A;  2D1R A;  2E8F A;  4RLQ A;  2VQF C;  4D4G A;  3A4I A;  2D28 C;  1XNR C;  1T5D X;  2CY1 A;  1P7L A;  5AE2 A;  2UUC C;  4KTT A;  1WCJ A;  1QWI A;  1IBM C;  2QVZ X;  4JI2 C;  3FCE A;  4B3S C;  4ZLP A;  1ZB8 A;  4DR1 C;  3B7W A;  2D1S A;  4DR6 C;  3TDE A;  4DCT A;  2KZF A;  1NY8 A;  4WS9 A;  2XR1 A;  4ISB A;  4JYA C;  3TR3 A;  3AF5 A;  3LUS A;  3LAX A;  3SO4 A;  3CQ1 A;  1I94 C;  2YWB A;  4X64 C;  4IZ6 A;  1LCI A;  4X65 C;  2MMA B;  2QL8 A;  3A26 A;  4RM3 A;  3DLP X;  3NPD A;  4JM1 A;  2HHH C;  3CJE A;  4PZP A;  3J81 D;  3LNO A;  4X62 C;  4XX2 A;  2DPL A;  2AYA A;  3IEV A;  1L2F A;  3A9V A;  5IWA C;  1V25 A;  2D7V A;  2VQE C;  4D57 A;  3T1Y C;  2VSQ A;  1NYE A;  1XMQ C;  5T8T A;  3G7S A;  1MDB A;  4DV1 C;  1JOS A;  5JRH A;  3PRO C;  2OO4 A;  4PHT A;  3GPC A;  5BUR A;  2E0G A;  4JI3 C;  3UZ0 A;  4GXQ A;  5IFI A;  4NXN C;  1HR0 C;  2NCL A;  4DV4 C;  4R1L A;  1VLA A;  4DG8 A;  3RG2 A;  4PUG A;  2UU9 C;  4R0M A;  1XS3 A;  1FJG C;  4DR7 C;  1BA3 A;  1FUG A;  2CXC A;  2ASB A;  3IPL A;  3K6R A;  5FLX D;  2DYJ A;  3J80 D;  4DR4 C;  4JI1 C;  2ONF A;  4HPV A;  1GPM A;  1P4E C;  4JI4 C;  2UXD C;  3T1H C;  3CQ3 A;  5A2Q D;  4LFB C;  4G1I A;  4DCS A;  5BST A;  2UUB C;  2MM9 A;  3NYQ A;  3VNQ A;  2UUA C;  5IT9 D;  1M6X C;  4DR2 C; 
#chains in the Genus database with same CATH homology
 1NY8 A;  2NCL A;  4PUG A;  2KZ0 A;  4PUI A;  2DHM A;  3TR3 A;  3O2E A;  2MCQ A;  2MMA B;  1XS3 A;  1V60 A;  2KDN A;  2MM9 A;  4PUH A;  5LCI A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...