1UWDA

Nmr structure of a protein with unknown function from thermotoga maritima (tm0487), which belongs to the duf59 family.
Total Genus 21

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
102
structure length
102
Chain Sequence
MSKKVTKEDVLNALKNVIDFELGLDVVSLGLVYDIQIDDQNNVKVLMTMTTPMCPLAGMILSDAEEAIKKIEGVNNVEVELTFDPPWTPERMSPELREKFGV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S2 (25-26)TI3 (28-31)TI2 (26-29)TIV3 (27-30)EMPTYS3 (35-39)S4 (43-48)TI4 (39-42)TIV7 (75-78)S5 (77-82)TI5 (89-92)AH3 (95-101)TIV8 (90-93)TIV1 (2-5)TIV6 (72-75)AH2 (58-70)TIV5 (55-58)S1 (19-20)TI1 (20-23)AH1 (8-16)Updating...
connected with : NaN
molecule tags Biosynthetic protein
source organism Thermotoga maritima
publication title NMR Structure of the Conserved Hypothetical Protein Tm0487 from Thermotoga Maritima: Implications for 216 Homologous Duf59 Proteins.
pubmed doi rcsb
molecule keywords HYPOTHETICAL PROTEIN TM0487
total genus 21
structure length 102
sequence length 102
ec nomenclature
pdb deposition date 2004-02-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01883 FeS_assembly_P Iron-sulfur cluster assembly protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.300.130 Alpha Beta 2-Layer Sandwich GMP Synthetase; Chain A, domain 3 Fe-S cluster assembly (FSCA) 1uwdA00
2Z51A 3LNOA 1WCJA 1UWDA 2CU6A 3UX3A 2M5OA 3CQ2A 1VEHA 1TH5A 2M5HA 2JNVA 1XHJA 3UX2A 3CQ3A 3CQ1A
chains in the Genus database with same CATH superfamily
3J80D 1JOSA 3A9VA 1XNQC 4DR3C 4NDNA 1EGAA 3J81D 1GPMA 1M6XC 4FUTA 2UXDC 1NYEA 2QVYX 4JI1C 3N54B 2Z51A 2E8EA 4L2ZA 2UU9C 3T1HC 2V7BA 1P7LA 5BSMA 3VNQA 4DV6C 4GKKC 1FUGA 4GXRA 2P2JA 4DCTA 3TUFA 4HPVA 2OPLB 2P2MA 4BC7A 3DAYA 1QWIA 2E8CA 2D1QA 2VSQA 2E8FA 3TDEA 3R9WA 4DV1C 1XS3A 2ZM6C 4DUZC 4RVOA 4G37A 2P02A 4D4GA 1WH9A 3NPDA 1UWDA 3CJEA 5K85A 1TH5A 4GXQA 5DV9A 3NYRA 2AYAA 4JI2C 2ZZNA 3H2TA 2CXCA 3CQ2A 4D4IA 5ADZA 4DR5C 1ZB9A 4IZ6A 3TR3A 4ZJZA 3UZ0A 5JRHA 3A4IA 3LUSA 4MH4A 4DCSA 4WS9A 2DYJA 4OX9C 3E7XA 4PUHA 1HNWC 2VQEC 1XMOC 4JI6C 3A26A 1M6XA 4LF9C 1UKKA 2VZEA 4OXIA 4DV0C 2Y4OA 4OYCA 3CQ1A 4B3TC 4NXNC 1FLOA 5CZXA 1HR0C 3N2QA 5KYTA 4FTFA 2M5HA 5BUQA 1HNXC 1V26A 4ISBA 1T5DX 4BSZA 1N2FA 3CW8X 3DLPX 5BSRA 2NCLA 3JAMD 4KTVA 4LFCC 3FCEA 2OPLA 3S82A 4DUYC 2MCQA 1USPB 4KTTA 3L95X 4KHPC 3GKUA 3PESA 3PROC 1N34C 1IBMC 4GS5A 3IEUA 4JM1A 4DCVA 4B3RC 2UUAC 1J5EC 4DR7C 4L7IA 4PUGA 3KXWA 2PROA 3RG2A 3VNRA 5A1IA 5T8TA 4B3SC 4LF5C 4BBYA 2WD9A 2DPLA 4JI3C 3C5EA 1LCIA 2KZ0A 5LMUC 5H9UA 3A25A 5KEIA 4PZPA 3ETCA 1KKGA 2M5OA 2WP0C 2YWBA 4LF8C 3CQ3A 3IPLA 4XX2A 4JI7C 1YJ7A 2D1SA 4EATA 3G7SA 4DG9A 2Y4NA 5IWAC 1WF3A 3UX2A 4IR7A 4NXMC 1N33C 1MXAA 4I9FA 2MM9A 4DV2C 4RLQA 1HNZC 1MXCA 5A19A 1XNRC 4R0MA 3RV2A 2YWCA 2UXCC 2Y27A 3EQ6A 1P4EC 4LF6C 4X64C 5CZVA 4LFBC 1USPA 3PBKA 1VLAA 2D1TA 4L4QA 4RM2A 5FLXD 1PG4A 3UEBA 5BR8C 4DR4C 1T5HX 3LAXA 1ZB8A 2ASBA 4DR2C 2OO4A 2HJGA 3I07A 1XHJA 2EGTA 2YCBA 1LQLA 3AF6A 1HH2P 5T8SA 4MTNA 2ONFA 4GKJC 2MMAB 2JMPA 4LE5A 5K8FA 1V25A 1BA3A 3OTOC 4DCUA 3R44A 4G36A 5GTDA 4JI0C 3AY0A 4R1LA 3A9UA 2OBVA 1XMQC 1O90A 5LMNC 4D57A 1XRAA 4DR1C 2YX1A 3ETOA 1VEHA 5BSWA 4X66C 4K0KC 3LNVA 1MXBA 4RMNA 4PUIA 4RLFA 1NY8A 2BH1X 2D1RA 4DR6C 1K0RA 1O93A 3I08A 5AE3A 2D7VA 4I9GA 4DG8A 2E5LC 3FCCA 3E7WA 5AE2A 1P4EA 3AF5A 3R9XA 4AQYC 1RY2A 2P2FA 4LF4C 1MDBA 1L2FA 5BSTA 3NI2A 3TQIA 5KYVA 2HHHC 5A2QD 4JI5C 5IFIA 2UXBC 2P20A 4R1MA 5AE1A 3DHVA 1PA4A 1MD9A 1ML8A 4B3MC 5BSUA 1RG9A 2DHMA 1QM4A 4YY3C 3NYQA 1XRBA 2JNVA 2VQFC 2QVXX 5BUSA 3B7WA 1O9TA 3O2EA 4DV4C 1AMUA 2P2QA 2QL8A 3UOWA 3IEVA 5A1GA 4PHTA 2P2BA 1WCJA 3LGXA 4U5YD 4DV5C 3IMLA 1IB8A 5LCIA 1ULTA 4RVNA 2D27A 4BC9A 2KDNA 2QVZX 4DV7C 5BURA 1N32C 3L8CA 3SO4A 1N36C 3UX3A 1V60A 5BSVA 1IBLC 4K0BA 1O92A 2ATWA 2PN2A 5IT9D 4PROC 2QW0X 4WV3A 2UUCC 1IBKC 4FUQA 2ZZMA 1MDFA 1FJGC 2XR1A 4DV3C 3GR0A 4JI8C 2F4VC 4RM3A 2CU6A 5E7QA 4G1IA 3GPCA 4YHHC 4JYAC 3LNOA 3VNSA 4JI4C 4LF7C 4LFAC 3EERA 4JV5C 2BJOA 4NOZA 2UUBC 2E7GA 2D28C 4X62C 1XRCA 3GR1A 3T1YC 4ZLPA 2PT7G 3CW9A 4BCAA 4X65C 1PG3A 1PU1A 3K6RA 4ODJA 1MKYA 4D56A 4TPSB 2KZFA 2CY1A 1I94C 2E0GA
chains in the Genus database with same CATH topology
2Z51A 3LNOA 1WCJA 1UWDA 2CU6A 3UX3A 2M5OA 3CQ2A 1VEHA 1TH5A 2M5HA 2JNVA 1XHJA 3UX2A 3CQ3A 3CQ1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2Z51 A;  3LNO A;  1WCJ A;  1UWD A;  2CU6 A;  3UX3 A;  2M5O A;  3CQ2 A;  1VEH A;  1TH5 A;  2M5H A;  2JNV A;  1XHJ A;  3UX2 A;  3CQ3 A;  3CQ1 A; 
#chains in the Genus database with same CATH topology
 3J80 D;  1JOS A;  3A9V A;  1XNQ C;  4DR3 C;  4NDN A;  1EGA A;  3J81 D;  1GPM A;  1M6X C;  4FUT A;  2UXD C;  1NYE A;  2QVY X;  4JI1 C;  3N54 B;  2Z51 A;  2E8E A;  4L2Z A;  2UU9 C;  3T1H C;  2V7B A;  1P7L A;  5BSM A;  3VNQ A;  4DV6 C;  4GKK C;  1FUG A;  4GXR A;  2P2J A;  4DCT A;  3TUF A;  4HPV A;  2OPL B;  2P2M A;  4BC7 A;  3DAY A;  1QWI A;  2E8C A;  2D1Q A;  2VSQ A;  2E8F A;  3TDE A;  3R9W A;  4DV1 C;  1XS3 A;  2ZM6 C;  4DUZ C;  4RVO A;  4G37 A;  2P02 A;  4D4G A;  1WH9 A;  3NPD A;  1UWD A;  3CJE A;  5K85 A;  1TH5 A;  4GXQ A;  5DV9 A;  3NYR A;  2AYA A;  4JI2 C;  2ZZN A;  3H2T A;  2CXC A;  3CQ2 A;  4D4I A;  5ADZ A;  4DR5 C;  1ZB9 A;  4IZ6 A;  3TR3 A;  4ZJZ A;  3UZ0 A;  5JRH A;  3A4I A;  3LUS A;  4MH4 A;  4DCS A;  4WS9 A;  2DYJ A;  4OX9 C;  3E7X A;  4PUH A;  1HNW C;  2VQE C;  1XMO C;  4JI6 C;  3A26 A;  1M6X A;  4LF9 C;  1UKK A;  2VZE A;  4OXI A;  4DV0 C;  2Y4O A;  4OYC A;  3CQ1 A;  4B3T C;  4NXN C;  1FLO A;  5CZX A;  1HR0 C;  3N2Q A;  5KYT A;  4FTF A;  2M5H A;  5BUQ A;  1HNX C;  1V26 A;  4ISB A;  1T5D X;  4BSZ A;  1N2F A;  3CW8 X;  3DLP X;  5BSR A;  2NCL A;  3JAM D;  4KTV A;  4LFC C;  3FCE A;  2OPL A;  3S82 A;  4DUY C;  2MCQ A;  1USP B;  4KTT A;  3L95 X;  4KHP C;  3GKU A;  3PES A;  3PRO C;  1N34 C;  1IBM C;  4GS5 A;  3IEU A;  4JM1 A;  4DCV A;  4B3R C;  2UUA C;  1J5E C;  4DR7 C;  4L7I A;  4PUG A;  3KXW A;  2PRO A;  3RG2 A;  3VNR A;  5A1I A;  5T8T A;  4B3S C;  4LF5 C;  4BBY A;  2WD9 A;  2DPL A;  4JI3 C;  3C5E A;  1LCI A;  2KZ0 A;  5LMU C;  5H9U A;  3A25 A;  5KEI A;  4PZP A;  3ETC A;  1KKG A;  2M5O A;  2WP0 C;  2YWB A;  4LF8 C;  3CQ3 A;  3IPL A;  4XX2 A;  4JI7 C;  1YJ7 A;  2D1S A;  4EAT A;  3G7S A;  4DG9 A;  2Y4N A;  5IWA C;  1WF3 A;  3UX2 A;  4IR7 A;  4NXM C;  1N33 C;  1MXA A;  4I9F A;  2MM9 A;  4DV2 C;  4RLQ A;  1HNZ C;  1MXC A;  5A19 A;  1XNR C;  4R0M A;  3RV2 A;  2YWC A;  2UXC C;  2Y27 A;  3EQ6 A;  1P4E C;  4LF6 C;  4X64 C;  5CZV A;  4LFB C;  1USP A;  3PBK A;  1VLA A;  2D1T A;  4L4Q A;  4RM2 A;  5FLX D;  1PG4 A;  3UEB A;  5BR8 C;  4DR4 C;  1T5H X;  3LAX A;  1ZB8 A;  2ASB A;  4DR2 C;  2OO4 A;  2HJG A;  3I07 A;  1XHJ A;  2EGT A;  2YCB A;  1LQL A;  3AF6 A;  1HH2 P;  5T8S A;  4MTN A;  2ONF A;  4GKJ C;  2MMA B;  2JMP A;  4LE5 A;  5K8F A;  1V25 A;  1BA3 A;  3OTO C;  4DCU A;  3R44 A;  4G36 A;  5GTD A;  4JI0 C;  3AY0 A;  4R1L A;  3A9U A;  2OBV A;  1XMQ C;  1O90 A;  5LMN C;  4D57 A;  1XRA A;  4DR1 C;  2YX1 A;  3ETO A;  1VEH A;  5BSW A;  4X66 C;  4K0K C;  3LNV A;  1MXB A;  4RMN A;  4PUI A;  4RLF A;  1NY8 A;  2BH1 X;  2D1R A;  4DR6 C;  1K0R A;  1O93 A;  3I08 A;  5AE3 A;  2D7V A;  4I9G A;  4DG8 A;  2E5L C;  3FCC A;  3E7W A;  5AE2 A;  1P4E A;  3AF5 A;  3R9X A;  4AQY C;  1RY2 A;  2P2F A;  4LF4 C;  1MDB A;  1L2F A;  5BST A;  3NI2 A;  3TQI A;  5KYV A;  2HHH C;  5A2Q D;  4JI5 C;  5IFI A;  2UXB C;  2P20 A;  4R1M A;  5AE1 A;  3DHV A;  1PA4 A;  1MD9 A;  1ML8 A;  4B3M C;  5BSU A;  1RG9 A;  2DHM A;  1QM4 A;  4YY3 C;  3NYQ A;  1XRB A;  2JNV A;  2VQF C;  2QVX X;  5BUS A;  3B7W A;  1O9T A;  3O2E A;  4DV4 C;  1AMU A;  2P2Q A;  2QL8 A;  3UOW A;  3IEV A;  5A1G A;  4PHT A;  2P2B A;  1WCJ A;  3LGX A;  4U5Y D;  4DV5 C;  3IML A;  1IB8 A;  5LCI A;  1ULT A;  4RVN A;  2D27 A;  4BC9 A;  2KDN A;  2QVZ X;  4DV7 C;  5BUR A;  1N32 C;  3L8C A;  3SO4 A;  1N36 C;  3UX3 A;  1V60 A;  5BSV A;  1IBL C;  4K0B A;  1O92 A;  2ATW A;  2PN2 A;  5IT9 D;  4PRO C;  2QW0 X;  4WV3 A;  2UUC C;  1IBK C;  4FUQ A;  2ZZM A;  1MDF A;  1FJG C;  2XR1 A;  4DV3 C;  3GR0 A;  4JI8 C;  2F4V C;  4RM3 A;  2CU6 A;  5E7Q A;  4G1I A;  3GPC A;  4YHH C;  4JYA C;  3LNO A;  3VNS A;  4JI4 C;  4LF7 C;  4LFA C;  3EER A;  4JV5 C;  2BJO A;  4NOZ A;  2UUB C;  2E7G A;  2D28 C;  4X62 C;  1XRC A;  3GR1 A;  3T1Y C;  4ZLP A;  2PT7 G;  3CW9 A;  4BCA A;  4X65 C;  1PG3 A;  1PU1 A;  3K6R A;  4ODJ A;  1MKY A;  4D56 A;  4TPS B;  2KZF A;  2CY1 A;  1I94 C;  2E0G A; 
#chains in the Genus database with same CATH homology
 2Z51 A;  3LNO A;  1WCJ A;  1UWD A;  2CU6 A;  3UX3 A;  2M5O A;  3CQ2 A;  1VEH A;  1TH5 A;  2M5H A;  2JNV A;  1XHJ A;  3UX2 A;  3CQ3 A;  3CQ1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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