1VEHA

Solution structure of rsgi ruh-018, a nifu-like domain of hirip5 protein from mouse cdna
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
92
structure length
92
Chain Sequence
GSSGSSGSEEDDEVVAMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEVEGVEQVSGPSSG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Solution structure of RSGI RUH-018, a NifU-like domain of hirip5 protein from mouse cDNA
rcsb
molecule tags Structural genomics, unknown function
source organism Mus musculus
molecule keywords NifU-like protein HIRIP5
total genus 17
structure length 92
sequence length 92
ec nomenclature
pdb deposition date 2004-03-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01106 NifU NifU-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.300.130 Alpha Beta 2-Layer Sandwich GMP Synthetase; Chain A, domain 3 Fe-S cluster assembly (FSCA) 1vehA01
2M5HA 3CQ2A 1XHJA 1WCJA 2Z51A 1UWDA 2CU6A 3CQ3A 3UX3A 1VEHA 3UX2A 3CQ1A 3LNOA 1TH5A 2JNVA 2M5OA
chains in the Genus database with same CATH superfamily
1RY2A 3GR1A 1ZB9A 1HH2P 5A2QD 3KXWA 1ML8A 4X65C 2YCBA 4DR6C 3IMLA 1I94C 1O9TA 4MTNA 4DR4C 1PA4A 1TH5A 5GTDA 4BCAA 4PUIA 2Z51A 4RVOA 3PBKA 3K6RA 2P02A 4DCTA 4R0MA 3LAXA 2XR1A 2UXBC 4OX9C 3IEVA 4DG8A 2CXCA 3T1YC 4KHPC 2VQEC 2KZFA 1IBMC 2QW0X 3E7XA 1N34C 3AF5A 3PROC 2Y27A 2E8FA 4DV7C 1MKYA 3S82A 3ETCA 2KZ0A 3R9XA 2Y4NA 2MCQA 2E5LC 2OPLB 5H9UA 4LFBC 3LGXA 2MM9A 3VNQA 4WV3A 4YY3C 1P4EA 1VEHA 3TR3A 5AE3A 4RVNA 5A19A 1N33C 4GXRA 4HPVA 4RLFA 4JYAC 4XX2A 4BBYA 1M6XA 4G1IA 2ZZNA 4IR7A 3L8CA 2F4VC 2DYJA 1FLOA 1ZB8A 1XS3A 5T8TA 3AF6A 1UWDA 2D27A 4PUGA 2PN2A 5DV9A 3NYRA 5BSVA 1YJ7A 1RG9A 4RM2A 3I08A 4JV5C 3A26A 1KKGA 4DV4C 1XNQC 4YHHC 3GPCA 4B3SC 5BR8C 1O93A 4EATA 5ADZA 1V60A 1MXCA 4JM1A 1PG4A 2PROA 1V25A 1L2FA 4NOZA 5BSTA 5KEIA 3A4IA 4D4GA 4DR5C 1WCJA 5AE2A 4I9FA 3NI2A 1USPB 2DHMA 1T5HX 1XRBA 5AE1A 4B3TC 2KDNA 1JOSA 1VLAA 4K0BA 5BUSA 1HR0C 4X62C 1XRAA 2DPLA 4GS5A 1O90A 1PU1A 4JI5C 4AQYC 4ZLPA 4JI0C 2JNVA 5KYVA 4LFAC 3A25A 2NCLA 3UX2A 3CW8X 2P2QA 2ATWA 2YWCA 2P2MA 2HHHC 5FLXD 3R9WA 4JI1C 4DR2C 4DG9A 4FTFA 5BSUA 4DUYC 3O2EA 4PUHA 1XRCA 5K8FA 1HNXC 2E8EA 4DCVA 5IFIA 4JI6C 4PROC 2E8CA 5BSRA 4D57A 3A9UA 2V7BA 4G37A 2VSQA 1EGAA 1ULTA 2QVZX 4LF7C 1FJGC 2BJOA 2MMAB 2YX1A 2QVYX 4OYCA 2ONFA 1LQLA 4NXMC 4DR1C 3DAYA 3TQIA 4GKJC 3N54B 2D1TA 4PZPA 5BUQA 4B3RC 5JRHA 2OO4A 4OXIA 3VNRA 3VNSA 2QL8A 3PESA 2OPLA 4RLQA 4X66C 1HNZC 3B7WA 2CU6A 4X64C 2ASBA 4JI2C 3G7SA 3UEBA 4LF6C 1IBLC 3TDEA 4JI4C 4DV0C 4NDNA 1XHJA 2CY1A 3C5EA 4R1LA 4ZJZA 4LF9C 1P7LA 4MH4A 5E7QA 2PT7G 4I9GA 3NPDA 3H2TA 4DV6C 1MDBA 3DHVA 4B3MC 1V26A 3A9VA 2P2FA 4NXNC 4DCSA 4LF4C 3T1HC 2P2JA 2D1SA 4FUTA 2WD9A 3IEUA 1IB8A 3EERA 1NYEA 1BA3A 4L7IA 2E7GA 4K0KC 4DR3C 3LUSA 2D7VA 1LCIA 5BSWA 2JMPA 5IT9D 5BSMA 4DR7C 1AMUA 4LFCC 3FCEA 5IWAC 4RM3A 3FCCA 2BH1X 4ODJA 4D4IA 1USPA 4GXQA 2QVXX 1PG3A 4BC9A 3SO4A 4DV5C 4DV2C 5T8SA 1MXAA 2HJGA 4JI8C 1WF3A 3L95X 4U5YD 2VZEA 5KYTA 2M5HA 4G36A 2UXDC 4JI3C 2ZZMA 4LF5C 3DLPX 3CW9A 4KTTA 3RV2A 5CZXA 3EQ6A 3CQ3A 4LF8C 2D28C 2Y4OA 5A1GA 2E0GA 4ISBA 3LNOA 4LE5A 4L4QA 5LMNC 1MD9A 1UKKA 1FUGA 4FUQA 3CJEA 3IPLA 3CQ2A 3RG2A 5A1IA 2D1QA 1T5DX 2UU9C 4JI7C 1HNWC 3ETOA 1NY8A 3TUFA 4BSZA 1XMOC 2P20A 5LMUC 3UOWA 4GKKC 4DV3C 3GR0A 3OTOC 3NYQA 3J81D 1IBKC 3N2QA 5K85A 2WP0C 3I07A 1P4EC 2UUAC 2ZM6C 2D1RA 5CZVA 3UX3A 1J5EC 1XNRC 2UUBC 4DV1C 2YWBA 2UXCC 3LNVA 4RMNA 1O92A 1M6XC 2AYAA 4DCUA 1QM4A 1MXBA 2VQFC 1XMQC 4L2ZA 3J80D 5LCIA 1GPMA 4PHTA 2EGTA 1N32C 4KTVA 4D56A 3CQ1A 4IZ6A 3JAMD 4TPSB 4DUZC 1QWIA 2OBVA 4WS9A 3UZ0A 4BC7A 3AY0A 4R1MA 1N36C 1WH9A 1N2FA 3GKUA 1MDFA 2P2BA 5BURA 2M5OA 1K0RA 3R44A 3E7WA 2UUCC
chains in the Genus database with same CATH topology
2M5HA 3CQ2A 1XHJA 1WCJA 2Z51A 1UWDA 2CU6A 3CQ3A 3UX3A 1VEHA 3UX2A 3CQ1A 3LNOA 1TH5A 2JNVA 2M5OA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2M5H A;  3CQ2 A;  1XHJ A;  1WCJ A;  2Z51 A;  1UWD A;  2CU6 A;  3CQ3 A;  3UX3 A;  1VEH A;  3UX2 A;  3CQ1 A;  3LNO A;  1TH5 A;  2JNV A;  2M5O A; 
#chains in the Genus database with same CATH topology
 1RY2 A;  3GR1 A;  1ZB9 A;  1HH2 P;  5A2Q D;  3KXW A;  1ML8 A;  4X65 C;  2YCB A;  4DR6 C;  3IML A;  1I94 C;  1O9T A;  4MTN A;  4DR4 C;  1PA4 A;  1TH5 A;  5GTD A;  4BCA A;  4PUI A;  2Z51 A;  4RVO A;  3PBK A;  3K6R A;  2P02 A;  4DCT A;  4R0M A;  3LAX A;  2XR1 A;  2UXB C;  4OX9 C;  3IEV A;  4DG8 A;  2CXC A;  3T1Y C;  4KHP C;  2VQE C;  2KZF A;  1IBM C;  2QW0 X;  3E7X A;  1N34 C;  3AF5 A;  3PRO C;  2Y27 A;  2E8F A;  4DV7 C;  1MKY A;  3S82 A;  3ETC A;  2KZ0 A;  3R9X A;  2Y4N A;  2MCQ A;  2E5L C;  2OPL B;  5H9U A;  4LFB C;  3LGX A;  2MM9 A;  3VNQ A;  4WV3 A;  4YY3 C;  1P4E A;  1VEH A;  3TR3 A;  5AE3 A;  4RVN A;  5A19 A;  1N33 C;  4GXR A;  4HPV A;  4RLF A;  4JYA C;  4XX2 A;  4BBY A;  1M6X A;  4G1I A;  2ZZN A;  4IR7 A;  3L8C A;  2F4V C;  2DYJ A;  1FLO A;  1ZB8 A;  1XS3 A;  5T8T A;  3AF6 A;  1UWD A;  2D27 A;  4PUG A;  2PN2 A;  5DV9 A;  3NYR A;  5BSV A;  1YJ7 A;  1RG9 A;  4RM2 A;  3I08 A;  4JV5 C;  3A26 A;  1KKG A;  4DV4 C;  1XNQ C;  4YHH C;  3GPC A;  4B3S C;  5BR8 C;  1O93 A;  4EAT A;  5ADZ A;  1V60 A;  1MXC A;  4JM1 A;  1PG4 A;  2PRO A;  1V25 A;  1L2F A;  4NOZ A;  5BST A;  5KEI A;  3A4I A;  4D4G A;  4DR5 C;  1WCJ A;  5AE2 A;  4I9F A;  3NI2 A;  1USP B;  2DHM A;  1T5H X;  1XRB A;  5AE1 A;  4B3T C;  2KDN A;  1JOS A;  1VLA A;  4K0B A;  5BUS A;  1HR0 C;  4X62 C;  1XRA A;  2DPL A;  4GS5 A;  1O90 A;  1PU1 A;  4JI5 C;  4AQY C;  4ZLP A;  4JI0 C;  2JNV A;  5KYV A;  4LFA C;  3A25 A;  2NCL A;  3UX2 A;  3CW8 X;  2P2Q A;  2ATW A;  2YWC A;  2P2M A;  2HHH C;  5FLX D;  3R9W A;  4JI1 C;  4DR2 C;  4DG9 A;  4FTF A;  5BSU A;  4DUY C;  3O2E A;  4PUH A;  1XRC A;  5K8F A;  1HNX C;  2E8E A;  4DCV A;  5IFI A;  4JI6 C;  4PRO C;  2E8C A;  5BSR A;  4D57 A;  3A9U A;  2V7B A;  4G37 A;  2VSQ A;  1EGA A;  1ULT A;  2QVZ X;  4LF7 C;  1FJG C;  2BJO A;  2MMA B;  2YX1 A;  2QVY X;  4OYC A;  2ONF A;  1LQL A;  4NXM C;  4DR1 C;  3DAY A;  3TQI A;  4GKJ C;  3N54 B;  2D1T A;  4PZP A;  5BUQ A;  4B3R C;  5JRH A;  2OO4 A;  4OXI A;  3VNR A;  3VNS A;  2QL8 A;  3PES A;  2OPL A;  4RLQ A;  4X66 C;  1HNZ C;  3B7W A;  2CU6 A;  4X64 C;  2ASB A;  4JI2 C;  3G7S A;  3UEB A;  4LF6 C;  1IBL C;  3TDE A;  4JI4 C;  4DV0 C;  4NDN A;  1XHJ A;  2CY1 A;  3C5E A;  4R1L A;  4ZJZ A;  4LF9 C;  1P7L A;  4MH4 A;  5E7Q A;  2PT7 G;  4I9G A;  3NPD A;  3H2T A;  4DV6 C;  1MDB A;  3DHV A;  4B3M C;  1V26 A;  3A9V A;  2P2F A;  4NXN C;  4DCS A;  4LF4 C;  3T1H C;  2P2J A;  2D1S A;  4FUT A;  2WD9 A;  3IEU A;  1IB8 A;  3EER A;  1NYE A;  1BA3 A;  4L7I A;  2E7G A;  4K0K C;  4DR3 C;  3LUS A;  2D7V A;  1LCI A;  5BSW A;  2JMP A;  5IT9 D;  5BSM A;  4DR7 C;  1AMU A;  4LFC C;  3FCE A;  5IWA C;  4RM3 A;  3FCC A;  2BH1 X;  4ODJ A;  4D4I A;  1USP A;  4GXQ A;  2QVX X;  1PG3 A;  4BC9 A;  3SO4 A;  4DV5 C;  4DV2 C;  5T8S A;  1MXA A;  2HJG A;  4JI8 C;  1WF3 A;  3L95 X;  4U5Y D;  2VZE A;  5KYT A;  2M5H A;  4G36 A;  2UXD C;  4JI3 C;  2ZZM A;  4LF5 C;  3DLP X;  3CW9 A;  4KTT A;  3RV2 A;  5CZX A;  3EQ6 A;  3CQ3 A;  4LF8 C;  2D28 C;  2Y4O A;  5A1G A;  2E0G A;  4ISB A;  3LNO A;  4LE5 A;  4L4Q A;  5LMN C;  1MD9 A;  1UKK A;  1FUG A;  4FUQ A;  3CJE A;  3IPL A;  3CQ2 A;  3RG2 A;  5A1I A;  2D1Q A;  1T5D X;  2UU9 C;  4JI7 C;  1HNW C;  3ETO A;  1NY8 A;  3TUF A;  4BSZ A;  1XMO C;  2P20 A;  5LMU C;  3UOW A;  4GKK C;  4DV3 C;  3GR0 A;  3OTO C;  3NYQ A;  3J81 D;  1IBK C;  3N2Q A;  5K85 A;  2WP0 C;  3I07 A;  1P4E C;  2UUA C;  2ZM6 C;  2D1R A;  5CZV A;  3UX3 A;  1J5E C;  1XNR C;  2UUB C;  4DV1 C;  2YWB A;  2UXC C;  3LNV A;  4RMN A;  1O92 A;  1M6X C;  2AYA A;  4DCU A;  1QM4 A;  1MXB A;  2VQF C;  1XMQ C;  4L2Z A;  3J80 D;  5LCI A;  1GPM A;  4PHT A;  2EGT A;  1N32 C;  4KTV A;  4D56 A;  3CQ1 A;  4IZ6 A;  3JAM D;  4TPS B;  4DUZ C;  1QWI A;  2OBV A;  4WS9 A;  3UZ0 A;  4BC7 A;  3AY0 A;  4R1M A;  1N36 C;  1WH9 A;  1N2F A;  3GKU A;  1MDF A;  2P2B A;  5BUR A;  2M5O A;  1K0R A;  3R44 A;  3E7W A;  2UUC C; 
#chains in the Genus database with same CATH homology
 2M5H A;  3CQ2 A;  1XHJ A;  1WCJ A;  2Z51 A;  1UWD A;  2CU6 A;  3CQ3 A;  3UX3 A;  1VEH A;  3UX2 A;  3CQ1 A;  3LNO A;  1TH5 A;  2JNV A;  2M5O A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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