The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
17
|
sequence length |
107
|
structure length |
107
|
Chain Sequence |
SLSLWQQCLARLQDELPATEFSMWIRPLQAELSDNTLALYAPNRFVLDWVRDKYLNNINGLLTSFCGADAPQLRFEVGTKPVTQTPQAAVTSNVAAPAQVAQTQPQR
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structure and Function of DnaA N-Terminal Domains: Specific Sites and Mechanisms in Inter-DnaA Interaction and in DnaB Helicase Loading on oriC
rcsb |
| molecule tags |
Replication
|
| source organism |
Escherichia coli k12
|
| molecule keywords |
Chromosomal replication initiator protein dnaA
|
| total genus |
17
|
| structure length |
107
|
| sequence length |
107
|
| ec nomenclature | |
| pdb deposition date | 2006-10-07 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF11638 | DnaA_N | DnaA N-terminal domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | GMP Synthetase; Chain A, domain 3 | GMP Synthetase; Chain A, domain 3 |
#chains in the Genus database with same CATH superfamily 2E0G A; 2WP0 C; 4TPS B; #chains in the Genus database with same CATH topology 2CU6 A; 4GKJ C; 3UOW A; 4RMN A; 1XS3 A; 2VQE C; 4DR3 C; 4FUT A; 5K8F A; 3A25 A; 2UXB C; 4X62 C; 3DHV A; 2XR1 A; 3IEU A; 2CY1 A; 3VNR A; 5BUS A; 2WD9 A; 3NYQ A; 2YWB A; 2D7V A; 2D1T A; 2PRO A; 4L4Q A; 2P2J A; 3PRO C; 4AQY C; 1N2F A; 1KKG A; 3UEB A; 2DYJ A; 2E0G A; 1O90 A; 4OXI A; 5LMN C; 2F4V C; 3JAM D; 5A2Q D; 4RVO A; 3TR3 A; 4JM1 A; 4R0M A; 1RY2 A; 2E8F A; 3UX3 A; 5DV9 A; 2PN2 A; 2WP0 C; 3S82 A; 3L8C A; 4B3R C; 4D4G A; 4DV4 C; 1V60 A; 1XRA A; 1VEH A; 4PUG A; 2KDN A; 4X64 C; 5KYT A; 3UZ0 A; 4PUH A; 5BSR A; 2MMA B; 3ETO A; 1N32 C; 4DV3 C; 3CQ2 A; 2UUC C; 4BC7 A; 3A26 A; 1WH9 A; 4JI4 C; 1HNX C; 3LNO A; 4LFA C; 2HHH C; 4LF5 C; 4DCT A; 4K0K C; 3VNS A; 3T1H C; 4JI7 C; 2Y27 A; 4DV7 C; 3J81 D; 1NY8 A; 4DCS A; 3B7W A; 1PG3 A; 4GS5 A; 4B3S C; 3EER A; 1MD9 A; 4DV5 C; 2YX1 A; 4LE5 A; 3I07 A; 1TH5 A; 4D4I A; 4FTF A; 3J80 D; 2ZZM A; 1LCI A; 1MKY A; 2QVX X; 2YCB A; 4DV6 C; 1MXA A; 4RM3 A; 3I08 A; 4NXN C; 2PT7 G; 1IBM C; 1PA4 A; 2P2B A; 4XX2 A; 1JOS A; 4BBY A; 5AE1 A; 5AE3 A; 4DR7 C; 3E7W A; 5BSV A; 4DCU A; 4LF6 C; 2CXC A; 3NYR A; 5BSW A; 4PRO C; 5BSU A; 4JV5 C; 3SO4 A; 1IBK C; 4I9F A; 2D1Q A; 1IB8 A; 2P2F A; 5E7Q A; 1WF3 A; 4DG9 A; 3T1Y C; 1ML8 A; 1PG4 A; 3CW8 X; 3FCE A; 4ZJZ A; 4LF7 C; 2DHM A; 4U5Y D; 4B3M C; 3LNV A; 2E7G A; 3K6R A; 1FUG A; 2M5O A; 1P4E A; 1XRB A; 2ASB A; 3EQ6 A; 4LF4 C; 5ADZ A; 1MXC A; 1UKK A; 5CZV A; 1WCJ A; 2Z51 A; 3GPC A; 3VNQ A; 4MH4 A; 1AMU A; 4NXM C; 4HPV A; 4DG8 A; 4JI1 C; 4MTN A; 1O9T A; 4JYA C; 1N34 C; 5KYV A; 3H2T A; 4JI0 C; 3DLP X; 3RV2 A; 1EGA A; 4DR1 C; 2QVY X; 2UXC C; 2D28 C; 3GR1 A; 4OX9 C; 2KZ0 A; 4LFB C; 3GKU A; 4G37 A; 2UUB C; 3IML A; 3IPL A; 5K85 A; 4NDN A; 3N54 B; 1NYE A; 4DR5 C; 4IR7 A; 2M5H A; 1HNW C; 3PBK A; 2HJG A; 4NOZ A; 1HR0 C; 5AE2 A; 1QWI A; 1O92 A; 4YY3 C; 2OPL A; 5H9U A; 1PU1 A; 1LQL A; 2ATW A; 1FLO A; 1GPM A; 2P2M A; 4R1M A; 1I94 C; 2P02 A; 3KXW A; 1UWD A; 3O2E A; 1XHJ A; 4YHH C; 3RG2 A; 1V26 A; 1T5H X; 2KZF A; 4JI5 C; 3GR0 A; 4BC9 A; 1N36 C; 4R1L A; 4IZ6 A; 3TQI A; 2D27 A; 2OBV A; 5IWA C; 3UX2 A; 2QL8 A; 4RLF A; 1XRC A; 2E8C A; 1VLA A; 4X66 C; 4LFC C; 5BST A; 1M6X A; 2UU9 C; 4DUY C; 2UXD C; 4JI6 C; 1L2F A; 2QVZ X; 3FCC A; 4K0B A; 4DCV A; 2V7B A; 2P2Q A; 5JRH A; 3CW9 A; 4ODJ A; 5A1I A; 1XNQ C; 3PES A; 1V25 A; 2MCQ A; 4G36 A; 1MDF A; 4JI3 C; 4DR6 C; 2OO4 A; 3L95 X; 2ZZN A; 3G7S A; 4EAT A; 4LF8 C; 1FJG C; 4FUQ A; 2AYA A; 5A19 A; 5BUR A; 4DR2 C; 2NCL A; 4JI8 C; 2E5L C; 2Y4O A; 3LUS A; 2P20 A; 4BSZ A; 3A9U A; 3AF5 A; 4DR4 C; 2MM9 A; 4DUZ C; 4JI2 C; 2YWC A; 1RG9 A; 3DAY A; 4GXR A; 1ZB8 A; 1XMQ C; 1T5D X; 4PHT A; 5LMU C; 3CJE A; 4X65 C; 4DV1 C; 5T8S A; 2BJO A; 4D56 A; 5IT9 D; 1QM4 A; 3R9X A; 3AY0 A; 5BUQ A; 3NPD A; 4I9G A; 1USP A; 3CQ3 A; 4DV0 C; 4PUI A; 5T8T A; 1O93 A; 3LGX A; 1BA3 A; 1IBL C; 4ZLP A; 3ETC A; 2OPL B; 3CQ1 A; 3AF6 A; 1J5E C; 3IEV A; 5A1G A; 1K0R A; 1HNZ C; 4KTT A; 1YJ7 A; 2UUA C; 2D1S A; 4GXQ A; 1N33 C; 4KTV A; 2DPL A; 2BH1 X; 3A9V A; 5BR8 C; 2E8E A; 1XNR C; 5CZX A; 2EGT A; 2JMP A; 1P7L A; 4DV2 C; 4RLQ A; 2VZE A; 4B3T C; 4LF9 C; 5KEI A; 2ZM6 C; 1M6X C; 4G1I A; 3NI2 A; 4TPS B; 1ZB9 A; 3R44 A; 2D1R A; 1XMO C; 3R9W A; 2VQF C; 4OYC A; 2JNV A; 5GTD A; 4L7I A; 4PZP A; 3TDE A; 2Y4N A; 5LCI A; 5FLX D; 4GKK C; 3LAX A; 3C5E A; 4WS9 A; 3OTO C; 3TUF A; 4KHP C; 3E7X A; 4D57 A; 4WV3 A; 3A4I A; 4RM2 A; 2VSQ A; 2ONF A; 4ISB A; 4L2Z A; 1HH2 P; 1P4E C; 1ULT A; 1MDB A; 1MXB A; 4RVN A; 4BCA A; 2QW0 X; 5IFI A; 5BSM A; 3N2Q A; 1USP B; #chains in the Genus database with same CATH homology 4GKJ C; 3UOW A; 4RMN A; 2VQE C; 4DR3 C; 4FUT A; 5K8F A; 2UXB C; 4X62 C; 3DHV A; 2XR1 A; 3IEU A; 2CY1 A; 3VNR A; 5BUS A; 2WD9 A; 3NYQ A; 2YWB A; 2D7V A; 2D1T A; 2PRO A; 4L4Q A; 2P2J A; 3PRO C; 4AQY C; 1N2F A; 1KKG A; 2DYJ A; 2E0G A; 1O90 A; 4OXI A; 5LMN C; 2F4V C; 3JAM D; 5A2Q D; 4RVO A; 4JM1 A; 4R0M A; 1RY2 A; 2E8F A; 5DV9 A; 2PN2 A; 2WP0 C; 3S82 A; 3L8C A; 4B3R C; 4D4G A; 4DV4 C; 1XRA A; 4X64 C; 5KYT A; 3UZ0 A; 5BSR A; 3ETO A; 1N32 C; 4DV3 C; 2UUC C; 4BC7 A; 1WH9 A; 4JI4 C; 1HNX C; 4LFA C; 2HHH C; 4LF5 C; 4DCT A; 4K0K C; 3VNS A; 3T1H C; 4JI7 C; 2Y27 A; 4DV7 C; 3J81 D; 4DCS A; 3B7W A; 1PG3 A; 4GS5 A; 4B3S C; 3EER A; 1MD9 A; 4DV5 C; 4LE5 A; 3I07 A; 4D4I A; 4FTF A; 3J80 D; 1LCI A; 1MKY A; 2QVX X; 2YCB A; 4DV6 C; 1MXA A; 4RM3 A; 3I08 A; 4NXN C; 2PT7 G; 1IBM C; 1PA4 A; 2P2B A; 4XX2 A; 1JOS A; 4BBY A; 5AE1 A; 5AE3 A; 4DR7 C; 3E7W A; 5BSV A; 4DCU A; 4LF6 C; 2CXC A; 3NYR A; 5BSW A; 4PRO C; 5BSU A; 4JV5 C; 3SO4 A; 1IBK C; 4I9F A; 2D1Q A; 2P2F A; 5E7Q A; 1WF3 A; 4DG9 A; 3T1Y C; 1ML8 A; 1PG4 A; 3CW8 X; 3FCE A; 4ZJZ A; 4LF7 C; 4U5Y D; 4B3M C; 3LNV A; 2E7G A; 1FUG A; 1XRB A; 2ASB A; 3EQ6 A; 4LF4 C; 5ADZ A; 1MXC A; 1UKK A; 5CZV A; 3GPC A; 3VNQ A; 4MH4 A; 1AMU A; 4NXM C; 4HPV A; 4DG8 A; 4JI1 C; 4MTN A; 1O9T A; 4JYA C; 1N34 C; 5KYV A; 3H2T A; 4JI0 C; 3DLP X; 3RV2 A; 1EGA A; 4DR1 C; 2QVY X; 2UXC C; 2D28 C; 3GR1 A; 4OX9 C; 4LFB C; 3GKU A; 4G37 A; 2UUB C; 3IML A; 3IPL A; 5K85 A; 4NDN A; 3N54 B; 1NYE A; 4DR5 C; 4IR7 A; 1HNW C; 3PBK A; 2HJG A; 4NOZ A; 1HR0 C; 5AE2 A; 1QWI A; 1O92 A; 4YY3 C; 2OPL A; 5H9U A; 1LQL A; 2ATW A; 1GPM A; 2P2M A; 4R1M A; 1I94 C; 2P02 A; 3KXW A; 4YHH C; 3RG2 A; 1V26 A; 1T5H X; 2KZF A; 4JI5 C; 3GR0 A; 4BC9 A; 1N36 C; 4R1L A; 4IZ6 A; 3TQI A; 2D27 A; 2OBV A; 5IWA C; 2QL8 A; 4RLF A; 1XRC A; 2E8C A; 1VLA A; 4X66 C; 4LFC C; 5BST A; 2UU9 C; 4DUY C; 2UXD C; 4JI6 C; 1L2F A; 2QVZ X; 3FCC A; 4K0B A; 4DCV A; 2V7B A; 2P2Q A; 5JRH A; 3CW9 A; 4ODJ A; 5A1I A; 1XNQ C; 3PES A; 1V25 A; 4G36 A; 1MDF A; 4JI3 C; 4DR6 C; 2OO4 A; 3L95 X; 3G7S A; 4EAT A; 4LF8 C; 1FJG C; 4FUQ A; 2AYA A; 5A19 A; 5BUR A; 4DR2 C; 4JI8 C; 2E5L C; 2Y4O A; 3LUS A; 2P20 A; 4BSZ A; 3A9U A; 3AF5 A; 4DR4 C; 4DUZ C; 4JI2 C; 2YWC A; 1RG9 A; 3DAY A; 4GXR A; 1ZB8 A; 1XMQ C; 1T5D X; 4PHT A; 5LMU C; 3CJE A; 4X65 C; 4DV1 C; 5T8S A; 2BJO A; 5IT9 D; 4D56 A; 1QM4 A; 3R9X A; 5BUQ A; 3NPD A; 4I9G A; 1USP A; 4DV0 C; 5T8T A; 1O93 A; 3LGX A; 1BA3 A; 1IBL C; 4ZLP A; 3ETC A; 2OPL B; 3AF6 A; 1J5E C; 3IEV A; 5A1G A; 1K0R A; 1HNZ C; 4KTT A; 1YJ7 A; 2UUA C; 2D1S A; 4GXQ A; 1N33 C; 4KTV A; 2DPL A; 2BH1 X; 3A9V A; 5BR8 C; 2E8E A; 1XNR C; 5CZX A; 2EGT A; 2JMP A; 1P7L A; 4DV2 C; 4RLQ A; 2VZE A; 4B3T C; 4LF9 C; 5KEI A; 2ZM6 C; 4G1I A; 3NI2 A; 4TPS B; 1ZB9 A; 3R44 A; 2D1R A; 1XMO C; 3R9W A; 2VQF C; 4OYC A; 5GTD A; 4L7I A; 4PZP A; 3TDE A; 2Y4N A; 5FLX D; 4GKK C; 3LAX A; 3C5E A; 4WS9 A; 3OTO C; 3TUF A; 4KHP C; 3E7X A; 4D57 A; 4WV3 A; 3A4I A; 4RM2 A; 2VSQ A; 2ONF A; 4ISB A; 4L2Z A; 1HH2 P; 1ULT A; 1MDB A; 1MXB A; 4RVN A; 4BCA A; 2QW0 X; 5IFI A; 5BSM A; 3N2Q A; 1USP B;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
