2M5OA

Solution nmr structure ctd domain of nfu1 iron-sulfur cluster scaffold homolog from homo sapiens, northeast structural genomics consortium (nesg) target hr2876c
Total Genus 26

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
97
structure length
97
Chain Sequence
MGHHHHHHSHMGSEEDDGVVAMIKELLDTRIRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQFYIPEVEGVEQVMDDESD

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
O1 (2-4)TIV1 (7-10)TIV2 (10-13)TIV3 (11-14)AH1 (17-38)AH2 (64-81)EMPTYTIV6 (57-60)O2 (91-93)S1 (42-48)TIV5 (47-50)S3 (87-90)TIV7 (58-61)TI1 (59-62)TI2 (60-63)TI3 (82-85)TIV4 (14-17)S2 (51-56)Updating...
connected with : NaN
molecule tags Biosynthetic protein
source organism Homo sapiens
publication title Solution NMR Structure CTD domain of NFU1 Iron-Sulfur Cluster Scaffold Homolog from Homo sapiens, Northeast Structural Genomics Consortium (NESG) Target HR2876C
rcsb
molecule keywords NFU1 iron-sulfur cluster scaffold homolog, mitochondrial
total genus 26
structure length 97
sequence length 97
ec nomenclature
pdb deposition date 2013-03-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01106 NifU NifU-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.300.130 Alpha Beta 2-Layer Sandwich GMP Synthetase; Chain A, domain 3 Fe-S cluster assembly (FSCA) 2m5oA01
1TH5A 3CQ2A 2JNVA 2M5OA 2M5HA 1VEHA 2Z51A 3CQ3A 2CU6A 3UX2A 3LNOA 1XHJA 1WCJA 3UX3A 3CQ1A 1UWDA
chains in the Genus database with same CATH superfamily
1J5EC 5K8FA 2P2BA 3FCEA 3NI2A 2ATWA 2XR1A 5E7QA 1T5HX 4OXIA 3ETCA 1I94C 2Y4OA 3UOWA 1XMOC 4MTNA 4FUTA 2P2QA 4X65C 5BSTA 1N32C 1PA4A 4D56A 1XNQC 4ZJZA 3S82A 3A9UA 4B3TC 2WD9A 1O9TA 1LQLA 3VNSA 1MXCA 2D1TA 1XRCA 4L2ZA 4NDNA 1M6XC 3TUFA 2E5LC 2UXBC 2KDNA 4YY3C 2P2MA 2WP0C 4DV6C 4I9GA 3DHVA 2D28C 5GTDA 4LFAC 3EERA 2VQFC 3GR1A 4X64C 4DV3C 4LF9C 5AE2A 3C5EA 4KHPC 4GS5A 4DV2C 3RG2A 5KYVA 3LNVA 4DCVA 4B3RC 4PROC 1M6XA 3PBKA 3PROC 3I07A 1TH5A 4LE5A 2HHHC 1FJGC 5BUQA 2M5OA 1JOSA 3NYRA 5BSVA 4JI7C 5LMNC 4ODJA 3VNQA 2UUAC 1O90A 1N33C 4RVOA 1IBMC 4YHHC 4U5YD 1PG3A 5H9UA 4DCUA 1QM4A 4WS9A 4FUQA 4KTVA 4RM2A 5T8SA 1YJ7A 4GXQA 4NXMC 3O2EA 2MMAB 1ZB9A 4LFBC 4LFCC 5KYTA 4ZLPA 3L95X 4DG9A 2D27A 3SO4A 2E7GA 2UUCC 2E8FA 2P2JA 4PUHA 3I08A 3TQIA 4AQYC 4BBYA 1IBLC 1XNRC 4JYAC 4BSZA 1MDFA 4RLFA 3AF5A 3AF6A 3A26A 1K0RA 5A1IA 2OBVA 4FTFA 5K85A 2P20A 3CJEA 4DUYC 3IEUA 4D4IA 1T5DX 1NY8A 4BC7A 4L7IA 4ISBA 1NYEA 4PUIA 2JMPA 4X62C 3IEVA 5BSRA 4BCAA 4DR7C 2D1SA 2NCLA 3KXWA 5BURA 2YCBA 1WF3A 1XRAA 3CW8X 1XMQC 4JI3C 2E8CA 3R9WA 2CXCA 1QWIA 1V26A 2MCQA 2BH1X 3FCCA 2KZ0A 4G36A 4L4QA 2OPLA 1KKGA 1O93A 4B3SC 3GPCA 3LAXA 2VQEC 2D1RA 3K6RA 3A9VA 1HR0C 1O92A 1VLAA 2E0GA 2D1QA 2QVYX 3TDEA 1RG9A 5BR8C 4PZPA 2AYAA 1ZB8A 3GR0A 1L2FA 3N2QA 1WH9A 2DHMA 5A19A 4KTTA 3ETOA 1PG4A 4EATA 4JM1A 2OPLB 3N54B 4RMNA 2F4VC 2E8EA 3IMLA 1BA3A 3UEBA 1MDBA 3CQ3A 2DPLA 3B7WA 1WCJA 4JI2C 1XRBA 1FUGA 1N36C 1VEHA 4RM3A 3TR3A 3LGXA 5AE3A 4G37A 2ONFA 2M5HA 5A2QD 3UX2A 4DV1C 3LNOA 1UWDA 2UXDC 4GXRA 4LF8C 2VSQA 4PUGA 5BUSA 5CZXA 2UUBC 3AY0A 1P4EC 4RVNA 4DG8A 2UU9C 4DV0C 4R0MA 4DV7C 3VNRA 2PROA 5T8TA 2CY1A 4DV4C 4NOZA 4DR2C 2ASBA 2P02A 3A25A 2ZM6C 4DV5C 2Y4NA 5A1GA 4DR5C 2OO4A 2KZFA 2QVXX 4DR3C 4DCTA 5DV9A 5IFIA 4I9FA 1FLOA 4HPVA 4JI6C 2MM9A 1XS3A 3OTOC 4D4GA 1P4EA 1HNWC 4WV3A 2EGTA 2BJOA 3G7SA 2Y27A 4TPSB 4GKJC 1MXBA 3PESA 4B3MC 5JRHA 3EQ6A 1MD9A 5CZVA 1V60A 1V25A 5LMUC 4IR7A 2DYJA 1IBKC 1EGAA 4LF5C 1ML8A 3T1HC 2ZZMA 3H2TA 3CQ1A 4R1MA 1LCIA 3J80D 3R44A 4JI1C 3E7WA 4X66C 2V7BA 4JV5C 3NPDA 1RY2A 1N34C 3JAMD 2PT7G 4XX2A 3L8CA 4RLQA 3DLPX 4MH4A 2HJGA 4DCSA 2D7VA 1N2FA 1HNXC 2Z51A 5BSWA 3T1YC 3UZ0A 4R1LA 1USPA 2ZZNA 4DR4C 3UX3A 2QVZX 5BSUA 2QL8A 5ADZA 1UKKA 5AE1A 4JI8C 1MXAA 3CW9A 3GKUA 3E7XA 3A4IA 4OX9C 1ULTA 3DAYA 1GPMA 4LF6C 4IZ6A 2YX1A 2CU6A 5LCIA 5KEIA 4D57A 1AMUA 5FLXD 4JI5C 4DR1C 2UXCC 2YWCA 1HH2P 2QW0X 1MKYA 5IT9D 4OYCA 3LUSA 4JI4C 3RV2A 1USPB 4BC9A 5BSMA 1HNZC 4K0KC 1PU1A 4NXNC 4LF4C 4JI0C 3IPLA 5IWAC 3J81D 4DUZC 1P7LA 4DR6C 2PN2A 3CQ2A 4K0BA 2P2FA 3NYQA 1XHJA 1IB8A 4G1IA 2JNVA 3R9XA 4LF7C 4PHTA 2YWBA 4GKKC 2VZEA
chains in the Genus database with same CATH topology
1TH5A 3CQ2A 2JNVA 2M5OA 2M5HA 1VEHA 2Z51A 3CQ3A 2CU6A 3UX2A 3LNOA 1XHJA 1WCJA 3UX3A 3CQ1A 1UWDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1TH5 A;  3CQ2 A;  2JNV A;  2M5O A;  2M5H A;  1VEH A;  2Z51 A;  3CQ3 A;  2CU6 A;  3UX2 A;  3LNO A;  1XHJ A;  1WCJ A;  3UX3 A;  3CQ1 A;  1UWD A; 
#chains in the Genus database with same CATH topology
 1J5E C;  5K8F A;  2P2B A;  3FCE A;  3NI2 A;  2ATW A;  2XR1 A;  5E7Q A;  1T5H X;  4OXI A;  3ETC A;  1I94 C;  2Y4O A;  3UOW A;  1XMO C;  4MTN A;  4FUT A;  2P2Q A;  4X65 C;  5BST A;  1N32 C;  1PA4 A;  4D56 A;  1XNQ C;  4ZJZ A;  3S82 A;  3A9U A;  4B3T C;  2WD9 A;  1O9T A;  1LQL A;  3VNS A;  1MXC A;  2D1T A;  1XRC A;  4L2Z A;  4NDN A;  1M6X C;  3TUF A;  2E5L C;  2UXB C;  2KDN A;  4YY3 C;  2P2M A;  2WP0 C;  4DV6 C;  4I9G A;  3DHV A;  2D28 C;  5GTD A;  4LFA C;  3EER A;  2VQF C;  3GR1 A;  4X64 C;  4DV3 C;  4LF9 C;  5AE2 A;  3C5E A;  4KHP C;  4GS5 A;  4DV2 C;  3RG2 A;  5KYV A;  3LNV A;  4DCV A;  4B3R C;  4PRO C;  1M6X A;  3PBK A;  3PRO C;  3I07 A;  1TH5 A;  4LE5 A;  2HHH C;  1FJG C;  5BUQ A;  2M5O A;  1JOS A;  3NYR A;  5BSV A;  4JI7 C;  5LMN C;  4ODJ A;  3VNQ A;  2UUA C;  1O90 A;  1N33 C;  4RVO A;  1IBM C;  4YHH C;  4U5Y D;  1PG3 A;  5H9U A;  4DCU A;  1QM4 A;  4WS9 A;  4FUQ A;  4KTV A;  4RM2 A;  5T8S A;  1YJ7 A;  4GXQ A;  4NXM C;  3O2E A;  2MMA B;  1ZB9 A;  4LFB C;  4LFC C;  5KYT A;  4ZLP A;  3L95 X;  4DG9 A;  2D27 A;  3SO4 A;  2E7G A;  2UUC C;  2E8F A;  2P2J A;  4PUH A;  3I08 A;  3TQI A;  4AQY C;  4BBY A;  1IBL C;  1XNR C;  4JYA C;  4BSZ A;  1MDF A;  4RLF A;  3AF5 A;  3AF6 A;  3A26 A;  1K0R A;  5A1I A;  2OBV A;  4FTF A;  5K85 A;  2P20 A;  3CJE A;  4DUY C;  3IEU A;  4D4I A;  1T5D X;  1NY8 A;  4BC7 A;  4L7I A;  4ISB A;  1NYE A;  4PUI A;  2JMP A;  4X62 C;  3IEV A;  5BSR A;  4BCA A;  4DR7 C;  2D1S A;  2NCL A;  3KXW A;  5BUR A;  2YCB A;  1WF3 A;  1XRA A;  3CW8 X;  1XMQ C;  4JI3 C;  2E8C A;  3R9W A;  2CXC A;  1QWI A;  1V26 A;  2MCQ A;  2BH1 X;  3FCC A;  2KZ0 A;  4G36 A;  4L4Q A;  2OPL A;  1KKG A;  1O93 A;  4B3S C;  3GPC A;  3LAX A;  2VQE C;  2D1R A;  3K6R A;  3A9V A;  1HR0 C;  1O92 A;  1VLA A;  2E0G A;  2D1Q A;  2QVY X;  3TDE A;  1RG9 A;  5BR8 C;  4PZP A;  2AYA A;  1ZB8 A;  3GR0 A;  1L2F A;  3N2Q A;  1WH9 A;  2DHM A;  5A19 A;  4KTT A;  3ETO A;  1PG4 A;  4EAT A;  4JM1 A;  2OPL B;  3N54 B;  4RMN A;  2F4V C;  2E8E A;  3IML A;  1BA3 A;  3UEB A;  1MDB A;  3CQ3 A;  2DPL A;  3B7W A;  1WCJ A;  4JI2 C;  1XRB A;  1FUG A;  1N36 C;  1VEH A;  4RM3 A;  3TR3 A;  3LGX A;  5AE3 A;  4G37 A;  2ONF A;  2M5H A;  5A2Q D;  3UX2 A;  4DV1 C;  3LNO A;  1UWD A;  2UXD C;  4GXR A;  4LF8 C;  2VSQ A;  4PUG A;  5BUS A;  5CZX A;  2UUB C;  3AY0 A;  1P4E C;  4RVN A;  4DG8 A;  2UU9 C;  4DV0 C;  4R0M A;  4DV7 C;  3VNR A;  2PRO A;  5T8T A;  2CY1 A;  4DV4 C;  4NOZ A;  4DR2 C;  2ASB A;  2P02 A;  3A25 A;  2ZM6 C;  4DV5 C;  2Y4N A;  5A1G A;  4DR5 C;  2OO4 A;  2KZF A;  2QVX X;  4DR3 C;  4DCT A;  5DV9 A;  5IFI A;  4I9F A;  1FLO A;  4HPV A;  4JI6 C;  2MM9 A;  1XS3 A;  3OTO C;  4D4G A;  1P4E A;  1HNW C;  4WV3 A;  2EGT A;  2BJO A;  3G7S A;  2Y27 A;  4TPS B;  4GKJ C;  1MXB A;  3PES A;  4B3M C;  5JRH A;  3EQ6 A;  1MD9 A;  5CZV A;  1V60 A;  1V25 A;  5LMU C;  4IR7 A;  2DYJ A;  1IBK C;  1EGA A;  4LF5 C;  1ML8 A;  3T1H C;  2ZZM A;  3H2T A;  3CQ1 A;  4R1M A;  1LCI A;  3J80 D;  3R44 A;  4JI1 C;  3E7W A;  4X66 C;  2V7B A;  4JV5 C;  3NPD A;  1RY2 A;  1N34 C;  3JAM D;  2PT7 G;  4XX2 A;  3L8C A;  4RLQ A;  3DLP X;  4MH4 A;  2HJG A;  4DCS A;  2D7V A;  1N2F A;  1HNX C;  2Z51 A;  5BSW A;  3T1Y C;  3UZ0 A;  4R1L A;  1USP A;  2ZZN A;  4DR4 C;  3UX3 A;  2QVZ X;  5BSU A;  2QL8 A;  5ADZ A;  1UKK A;  5AE1 A;  4JI8 C;  1MXA A;  3CW9 A;  3GKU A;  3E7X A;  3A4I A;  4OX9 C;  1ULT A;  3DAY A;  1GPM A;  4LF6 C;  4IZ6 A;  2YX1 A;  2CU6 A;  5LCI A;  5KEI A;  4D57 A;  1AMU A;  5FLX D;  4JI5 C;  4DR1 C;  2UXC C;  2YWC A;  1HH2 P;  2QW0 X;  1MKY A;  5IT9 D;  4OYC A;  3LUS A;  4JI4 C;  3RV2 A;  1USP B;  4BC9 A;  5BSM A;  1HNZ C;  4K0K C;  1PU1 A;  4NXN C;  4LF4 C;  4JI0 C;  3IPL A;  5IWA C;  3J81 D;  4DUZ C;  1P7L A;  4DR6 C;  2PN2 A;  3CQ2 A;  4K0B A;  2P2F A;  3NYQ A;  1XHJ A;  1IB8 A;  4G1I A;  2JNV A;  3R9X A;  4LF7 C;  4PHT A;  2YWB A;  4GKK C;  2VZE A; 
#chains in the Genus database with same CATH homology
 1TH5 A;  3CQ2 A;  2JNV A;  2M5O A;  2M5H A;  1VEH A;  2Z51 A;  3CQ3 A;  2CU6 A;  3UX2 A;  3LNO A;  1XHJ A;  1WCJ A;  3UX3 A;  3CQ1 A;  1UWD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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