2MCQA

Nmr structure of a bola-like hypothetical protein rp812 from rickettsia prowazekii, seattle structural genomics center for infectious disease (ssgcid)
Total Genus 10
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
10
sequence length
77
structure length
77
Chain Sequence
MAISAEELEKILKKSFPSSVIKITDLVGDQDHYALEISDAQFNGLSLINQHKLVKNALSEILNKKLHSISIKTISIP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Unknown function
source organism Rickettsia prowazekii
publication title NMR structure of a BolA-like hypothetical protein RP812 from Rickettsia prowazekii, Seattle structural genomics center for infectious disease (SSGCID)
rcsb
molecule keywords Uncharacterized protein RP812
total genus 10
structure length 77
sequence length 77
ec nomenclature
pdb deposition date 2013-08-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01722 BolA BolA-like protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.300.90 Alpha Beta 2-Layer Sandwich GMP Synthetase; Chain A, domain 3 BolA-like 2mcqA01
2NCLA 4PUHA 2KDNA 2MCQA 2MM9A 1V60A 2KZ0A 3TR3A 2DHMA 1NY8A 2MMAB 3O2EA 4PUIA 1XS3A 5LCIA 4PUGA
chains in the Genus database with same CATH superfamily
4OYCA 4I9FA 2ASBA 1USPA 4GXQA 3UZ0A 4L4QA 4DV0C 1ML8A 4FUTA 3GR1A 2OBVA 1P7LA 4LF8C 1MDFA 1O90A 2PROA 2OPLA 2D7VA 4B3SC 3UEBA 4GKJC 4DR7C 3E7WA 2YX1A 1TH5A 2E0GA 4D56A 5AE3A 1MXCA 4DCUA 4DR2C 2UUCC 4LFCC 4DCVA 2CU6A 1LQLA 4LF5C 2P02A 2PN2A 4FTFA 1IBMC 1MD9A 3CW8X 2NCLA 3IMLA 4L2ZA 3R44A 4LF4C 5BURA 4BCAA 2Y27A 5K8FA 1O93A 2QW0X 2JNVA 2D1TA 2D1SA 5AE1A 4KTVA 5BSUA 4IZ6A 5A19A 2KZFA 2YWCA 3I07A 4DG8A 4JI2C 1MDBA 3L95X 2QVXX 2CY1A 2UXBC 3L8CA 4RVOA 4PZPA 4R0MA 3T1HC 3A9VA 5BUSA 5DV9A 4BBYA 1L2FA 3AF6A 1N32C 3IEUA 1I94C 1XNRC 1O92A 1ULTA 4K0BA 3VNQA 3AF5A 4R1MA 2JMPA 1NYEA 3S82A 4GS5A 2EGTA 1V60A 5JRHA 4RMNA 4MH4A 4PUHA 2BJOA 1RY2A 4LFBC 2V7BA 1V26A 2UXCC 3UX2A 2D1QA 5T8TA 4DCTA 1N36C 1RG9A 2DYJA 2D28C 5A1IA 5BSVA 3O2EA 5AE2A 1XS3A 2QVZX 1T5HX 2VQEC 4DR5C 4YY3C 2P2QA 2BH1X 1UKKA 1T5DX 5LCIA 2E7GA 4KHPC 3IEVA 3OTOC 2QL8A 4G37A 1XRBA 3UOWA 3CQ2A 1VLAA 1M6XA 4PROC 4X64C 2UXDC 2HJGA 5E7QA 3R9WA 4BC9A 2D27A 3LNOA 2D1RA 1IBLC 3A4IA 3NYRA 2P2BA 4JI0C 1GPMA 3VNSA 3LNVA 3N2QA 4X65C 3H2TA 3JAMD 2E8FA 3J81D 2P2FA 1MKYA 4RLQA 1KKGA 3EQ6A 2PT7G 4X66C 2MCQA 3GR0A 4DR3C 1HNXC 4ODJA 5CZVA 4XX2A 1N34C 4DUYC 3FCCA 3K6RA 5BUQA 3AY0A 4B3RC 1NY8A 5KEIA 4DV1C 4JI5C 4KTTA 4LF7C 2E5LC 1XRCA 4U5YD 4RM3A 3FCEA 3TQIA 4DV7C 2UU9C 2Y4OA 2VSQA 2VQFC 5KYTA 4TPSB 4RLFA 5IT9D 1K0RA 5IFIA 5A1GA 2ONFA 4ZJZA 4GXRA 3DHVA 3ETOA 2OO4A 1HH2P 4JYAC 3CQ3A 1IBKC 2MMAB 4DV6C 1MXBA 1WCJA 4AQYC 4DV3C 4DG9A 1BA3A 1N33C 2KZ0A 3DLPX 4GKKC 2UUBC 1P4EA 1QM4A 2M5OA 4I9GA 3A9UA 4OXIA 2KDNA 4D4IA 5A2QD 4DR4C 4DV5C 4PUIA 1FUGA 4NDNA 4NOZA 4DUZC 4D57A 1YJ7A 3UX3A 3TDEA 4OX9C 1V25A 4EATA 3CJEA 4JI1C 3LAXA 1N2FA 4BSZA 2WD9A 2QVYX 4YHHC 2ZZMA 2AYAA 1MXAA 4G36A 1JOSA 4MTNA 3NPDA 1WF3A 4R1LA 3SO4A 2M5HA 3DAYA 4NXMC 1USPB 4PUGA 4JI7C 1PG4A 4DR1C 1XHJA 1FLOA 2Z51A 4RVNA 2UUAC 2P20A 3PBKA 2OPLB 2YCBA 2ATWA 4K0KC 4B3TC 5H9UA 5T8SA 3TUFA 3ETCA 4JI3C 3J80D 2HHHC 1ZB8A 5BSRA 4JI8C 4L7IA 3KXWA 5FLXD 2E8CA 2P2JA 2E8EA 1M6XC 3B7WA 1ZB9A 1AMUA 4FUQA 3C5EA 3A25A 1XMQC 3E7XA 4DV4C 5LMUC 1EGAA 4BC7A 5K85A 3CQ1A 2ZM6C 4LFAC 4JI4C 1XNQC 1VEHA 4HPVA 3N54B 2F4VC 1XMOC 1HR0C 3RV2A 4DV2C 1WH9A 3R9XA 1XRAA 1O9TA 3GPCA 2XR1A 1IB8A 3A26A 3T1YC 4G1IA 3PROC 4JI6C 3PESA 4ISBA 4LE5A 3NI2A 4PHTA 4B3MC 3LUSA 4DCSA 4DR6C 2CXCA 4LF6C 1J5EC 4JM1A 3NYQA 4ZLPA 5LMNC 1PA4A 5IWAC 3I08A 1HNWC 4RM2A 3VNRA 5BSMA 4WS9A 5BR8C 1LCIA 3IPLA 2P2MA 5CZXA 5BSTA 1FJGC 3GKUA 1UWDA 1PU1A 1HNZC 1QWIA 2Y4NA 3G7SA 4WV3A 4LF9C 2VZEA 4NXNC 2YWBA 4X62C 5ADZA 3CW9A 5GTDA 5BSWA 4D4GA 3LGXA 4IR7A 2MM9A 2DHMA 5KYVA 4JV5C 1P4EC 2DPLA 3EERA 1PG3A 2ZZNA 2WP0C 3TR3A 3RG2A
chains in the Genus database with same CATH topology
2NCLA 4PUHA 2KDNA 2MCQA 2MM9A 1V60A 2KZ0A 3TR3A 2DHMA 1NY8A 2MMAB 3O2EA 4PUIA 1XS3A 5LCIA 4PUGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2NCL A;  4PUH A;  2KDN A;  2MCQ A;  2MM9 A;  1V60 A;  2KZ0 A;  3TR3 A;  2DHM A;  1NY8 A;  2MMA B;  3O2E A;  4PUI A;  1XS3 A;  5LCI A;  4PUG A; 
#chains in the Genus database with same CATH topology
 4OYC A;  4I9F A;  2ASB A;  1USP A;  4GXQ A;  3UZ0 A;  4L4Q A;  4DV0 C;  1ML8 A;  4FUT A;  3GR1 A;  2OBV A;  1P7L A;  4LF8 C;  1MDF A;  1O90 A;  2PRO A;  2OPL A;  2D7V A;  4B3S C;  3UEB A;  4GKJ C;  4DR7 C;  3E7W A;  2YX1 A;  1TH5 A;  2E0G A;  4D56 A;  5AE3 A;  1MXC A;  4DCU A;  4DR2 C;  2UUC C;  4LFC C;  4DCV A;  2CU6 A;  1LQL A;  4LF5 C;  2P02 A;  2PN2 A;  4FTF A;  1IBM C;  1MD9 A;  3CW8 X;  2NCL A;  3IML A;  4L2Z A;  3R44 A;  4LF4 C;  5BUR A;  4BCA A;  2Y27 A;  5K8F A;  1O93 A;  2QW0 X;  2JNV A;  2D1T A;  2D1S A;  5AE1 A;  4KTV A;  5BSU A;  4IZ6 A;  5A19 A;  2KZF A;  2YWC A;  3I07 A;  4DG8 A;  4JI2 C;  1MDB A;  3L95 X;  2QVX X;  2CY1 A;  2UXB C;  3L8C A;  4RVO A;  4PZP A;  4R0M A;  3T1H C;  3A9V A;  5BUS A;  5DV9 A;  4BBY A;  1L2F A;  3AF6 A;  1N32 C;  3IEU A;  1I94 C;  1XNR C;  1O92 A;  1ULT A;  4K0B A;  3VNQ A;  3AF5 A;  4R1M A;  2JMP A;  1NYE A;  3S82 A;  4GS5 A;  2EGT A;  1V60 A;  5JRH A;  4RMN A;  4MH4 A;  4PUH A;  2BJO A;  1RY2 A;  4LFB C;  2V7B A;  1V26 A;  2UXC C;  3UX2 A;  2D1Q A;  5T8T A;  4DCT A;  1N36 C;  1RG9 A;  2DYJ A;  2D28 C;  5A1I A;  5BSV A;  3O2E A;  5AE2 A;  1XS3 A;  2QVZ X;  1T5H X;  2VQE C;  4DR5 C;  4YY3 C;  2P2Q A;  2BH1 X;  1UKK A;  1T5D X;  5LCI A;  2E7G A;  4KHP C;  3IEV A;  3OTO C;  2QL8 A;  4G37 A;  1XRB A;  3UOW A;  3CQ2 A;  1VLA A;  1M6X A;  4PRO C;  4X64 C;  2UXD C;  2HJG A;  5E7Q A;  3R9W A;  4BC9 A;  2D27 A;  3LNO A;  2D1R A;  1IBL C;  3A4I A;  3NYR A;  2P2B A;  4JI0 C;  1GPM A;  3VNS A;  3LNV A;  3N2Q A;  4X65 C;  3H2T A;  3JAM D;  2E8F A;  3J81 D;  2P2F A;  1MKY A;  4RLQ A;  1KKG A;  3EQ6 A;  2PT7 G;  4X66 C;  2MCQ A;  3GR0 A;  4DR3 C;  1HNX C;  4ODJ A;  5CZV A;  4XX2 A;  1N34 C;  4DUY C;  3FCC A;  3K6R A;  5BUQ A;  3AY0 A;  4B3R C;  1NY8 A;  5KEI A;  4DV1 C;  4JI5 C;  4KTT A;  4LF7 C;  2E5L C;  1XRC A;  4U5Y D;  4RM3 A;  3FCE A;  3TQI A;  4DV7 C;  2UU9 C;  2Y4O A;  2VSQ A;  2VQF C;  5KYT A;  4TPS B;  4RLF A;  5IT9 D;  1K0R A;  5IFI A;  5A1G A;  2ONF A;  4ZJZ A;  4GXR A;  3DHV A;  3ETO A;  2OO4 A;  1HH2 P;  4JYA C;  3CQ3 A;  1IBK C;  2MMA B;  4DV6 C;  1MXB A;  1WCJ A;  4AQY C;  4DV3 C;  4DG9 A;  1BA3 A;  1N33 C;  2KZ0 A;  3DLP X;  4GKK C;  2UUB C;  1P4E A;  1QM4 A;  2M5O A;  4I9G A;  3A9U A;  4OXI A;  2KDN A;  4D4I A;  5A2Q D;  4DR4 C;  4DV5 C;  4PUI A;  1FUG A;  4NDN A;  4NOZ A;  4DUZ C;  4D57 A;  1YJ7 A;  3UX3 A;  3TDE A;  4OX9 C;  1V25 A;  4EAT A;  3CJE A;  4JI1 C;  3LAX A;  1N2F A;  4BSZ A;  2WD9 A;  2QVY X;  4YHH C;  2ZZM A;  2AYA A;  1MXA A;  4G36 A;  1JOS A;  4MTN A;  3NPD A;  1WF3 A;  4R1L A;  3SO4 A;  2M5H A;  3DAY A;  4NXM C;  1USP B;  4PUG A;  4JI7 C;  1PG4 A;  4DR1 C;  1XHJ A;  1FLO A;  2Z51 A;  4RVN A;  2UUA C;  2P20 A;  3PBK A;  2OPL B;  2YCB A;  2ATW A;  4K0K C;  4B3T C;  5H9U A;  5T8S A;  3TUF A;  3ETC A;  4JI3 C;  3J80 D;  2HHH C;  1ZB8 A;  5BSR A;  4JI8 C;  4L7I A;  3KXW A;  5FLX D;  2E8C A;  2P2J A;  2E8E A;  1M6X C;  3B7W A;  1ZB9 A;  1AMU A;  4FUQ A;  3C5E A;  3A25 A;  1XMQ C;  3E7X A;  4DV4 C;  5LMU C;  1EGA A;  4BC7 A;  5K85 A;  3CQ1 A;  2ZM6 C;  4LFA C;  4JI4 C;  1XNQ C;  1VEH A;  4HPV A;  3N54 B;  2F4V C;  1XMO C;  1HR0 C;  3RV2 A;  4DV2 C;  1WH9 A;  3R9X A;  1XRA A;  1O9T A;  3GPC A;  2XR1 A;  1IB8 A;  3A26 A;  3T1Y C;  4G1I A;  3PRO C;  4JI6 C;  3PES A;  4ISB A;  4LE5 A;  3NI2 A;  4PHT A;  4B3M C;  3LUS A;  4DCS A;  4DR6 C;  2CXC A;  4LF6 C;  1J5E C;  4JM1 A;  3NYQ A;  4ZLP A;  5LMN C;  1PA4 A;  5IWA C;  3I08 A;  1HNW C;  4RM2 A;  3VNR A;  5BSM A;  4WS9 A;  5BR8 C;  1LCI A;  3IPL A;  2P2M A;  5CZX A;  5BST A;  1FJG C;  3GKU A;  1UWD A;  1PU1 A;  1HNZ C;  1QWI A;  2Y4N A;  3G7S A;  4WV3 A;  4LF9 C;  2VZE A;  4NXN C;  2YWB A;  4X62 C;  5ADZ A;  3CW9 A;  5GTD A;  5BSW A;  4D4G A;  3LGX A;  4IR7 A;  2MM9 A;  2DHM A;  5KYV A;  4JV5 C;  1P4E C;  2DPL A;  3EER A;  1PG3 A;  2ZZN A;  2WP0 C;  3TR3 A;  3RG2 A; 
#chains in the Genus database with same CATH homology
 2NCL A;  4PUH A;  2KDN A;  2MCQ A;  2MM9 A;  1V60 A;  2KZ0 A;  3TR3 A;  2DHM A;  1NY8 A;  2MMA B;  3O2E A;  4PUI A;  1XS3 A;  5LCI A;  4PUG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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