The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
51
|
sequence length |
154
|
structure length |
154
|
Chain Sequence |
MVPLTEENVESVLDEIRPYLMSDGGNVALHEIDGNVVRVKLQGACGSCPSSTMTMKMGIERRLMEKIPEIVAVEALPDEETGLELNEENIEKVLEEIRPYLIGTADGSLDLVEIEDPIVKIRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLI
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structural Analysis of Arabidopsis CnfU Protein: An Iron-Sulfur Cluster Biosynthetic Scaffold in Chloroplasts.
pubmed doi rcsb |
| molecule keywords |
NifU-like protein 2, chloroplast
|
| molecule tags |
Metal transport
|
| source organism |
Arabidopsis thaliana
|
| total genus |
51
|
| structure length |
154
|
| sequence length |
154
|
| ec nomenclature | |
| pdb deposition date | 2007-06-26 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01106 | NifU | NifU-like domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | GMP Synthetase; Chain A, domain 3 | Fe-S cluster assembly (FSCA) | ||
| Alpha Beta | 2-Layer Sandwich | GMP Synthetase; Chain A, domain 3 | Fe-S cluster assembly (FSCA) |
#chains in the Genus database with same CATH superfamily 3UX3 A; 2M5H A; 3CQ1 A; 3LNO A; 1WCJ A; 2M5O A; 1VEH A; 1UWD A; 2CU6 A; 3CQ3 A; 3CQ2 A; 1XHJ A; 3UX2 A; 1TH5 A; 2Z51 A; 2JNV A; #chains in the Genus database with same CATH topology 5DV9 A; 2UXD C; 1N34 C; 4L2Z A; 2E8F A; 2OO4 A; 1HNX C; 3C5E A; 3ETC A; 3A25 A; 1M6X C; 1O93 A; 4RLF A; 5BSW A; 1PA4 A; 5CZV A; 4DR4 C; 3TQI A; 2MM9 A; 2VZE A; 4PUG A; 3EQ6 A; 3R9X A; 3IEV A; 1NY8 A; 1XNQ C; 1QM4 A; 2JMP A; 5K85 A; 4ZJZ A; 3E7W A; 3L95 X; 4DR5 C; 4PZP A; 2E8C A; 4RVO A; 1HNZ C; 2UXB C; 4PHT A; 2VQE C; 5T8T A; 4DCU A; 4L7I A; 3SO4 A; 5A19 A; 5IWA C; 1M6X A; 1XRB A; 2XR1 A; 4WS9 A; 4DCV A; 2ZZM A; 1KKG A; 4KTT A; 2CY1 A; 3T1Y C; 1XMO C; 1WH9 A; 2YX1 A; 3UOW A; 2D28 C; 2VSQ A; 1VEH A; 2E7G A; 1XS3 A; 4BC9 A; 3NI2 A; 4NOZ A; 1HH2 P; 4D57 A; 2KZ0 A; 1PG3 A; 1ML8 A; 3TUF A; 1PG4 A; 4FUQ A; 3FCE A; 3LAX A; 3S82 A; 4RM3 A; 1WCJ A; 1L2F A; 1V25 A; 3DLP X; 2QVY X; 5AE1 A; 1UWD A; 3A4I A; 4NDN A; 4G37 A; 1MDF A; 1VLA A; 4DV1 C; 5AE3 A; 1AMU A; 4B3R C; 1GPM A; 4G36 A; 5BST A; 1K0R A; 5K8F A; 1USP A; 4JM1 A; 3TR3 A; 4DR1 C; 4OYC A; 1FLO A; 5ADZ A; 1MXA A; 5BSR A; 4KTV A; 2KZF A; 2MMA B; 1MD9 A; 2E8E A; 2D1Q A; 2Y27 A; 1MXC A; 4JI0 C; 4DV7 C; 2P2Q A; 5H9U A; 4B3M C; 4DV6 C; 3R44 A; 1N36 C; 3RV2 A; 5E7Q A; 4IR7 A; 4B3S C; 3A9U A; 3CW9 A; 1WF3 A; 3LNO A; 4ODJ A; 5T8S A; 1XMQ C; 4OXI A; 2JNV A; 3H2T A; 2ATW A; 1FUG A; 1P4E C; 3JAM D; 5A2Q D; 3PES A; 4JI3 C; 3VNS A; 4PUH A; 1EGA A; 4R1L A; 4FUT A; 5KYV A; 4LFB C; 1JOS A; 1RG9 A; 4NXM C; 2P2F A; 1PU1 A; 5A1I A; 2P2B A; 3LUS A; 3CW8 X; 3IEU A; 4U5Y D; 1ULT A; 3LGX A; 4DR7 C; 4ZLP A; 1P4E A; 4MTN A; 2DYJ A; 2Y4N A; 4GKK C; 3CQ3 A; 3VNQ A; 2AYA A; 4DR6 C; 4FTF A; 4MH4 A; 5A1G A; 2WP0 C; 2OBV A; 1IBK C; 4DG9 A; 1MDB A; 4DR3 C; 1O92 A; 2DHM A; 3AY0 A; 5KYT A; 2ZZN A; 3I07 A; 2CU6 A; 1O9T A; 4BCA A; 2YWB A; 5BUS A; 5AE2 A; 4LF5 C; 3RG2 A; 1XNR C; 4YHH C; 3R9W A; 3LNV A; 5BSM A; 1QWI A; 3I08 A; 5BSU A; 4JI8 C; 3DHV A; 2P2M A; 4K0B A; 4DCT A; 4AQY C; 2P2J A; 2D7V A; 4GKJ C; 4D4I A; 4NXN C; 2MCQ A; 4DV4 C; 5FLX D; 4ISB A; 5LMU C; 4X64 C; 2PN2 A; 4R1M A; 1ZB9 A; 4DV3 C; 2EGT A; 1I94 C; 3T1H C; 3TDE A; 2YCB A; 3AF5 A; 1T5D X; 3UX3 A; 3CQ2 A; 1XHJ A; 3NPD A; 3IML A; 2QVX X; 2QW0 X; 2WD9 A; 3J80 D; 3J81 D; 3G7S A; 5BSV A; 2UUA C; 5GTD A; 4X62 C; 1XRA A; 4WV3 A; 4JYA C; 2P02 A; 3L8C A; 4RLQ A; 4K0K C; 4RVN A; 4GXR A; 1MKY A; 4GS5 A; 2Y4O A; 4OX9 C; 2UXC C; 4KHP C; 4LF8 C; 4DV2 C; 1N32 C; 2PRO A; 4JI5 C; 4D56 A; 3UZ0 A; 4BC7 A; 3NYR A; 4LF4 C; 2OPL B; 1V26 A; 2KDN A; 1TH5 A; 1HNW C; 2QVZ X; 4G1I A; 4DR2 C; 4JI7 C; 3A26 A; 4B3T C; 1IBL C; 2HHH C; 4LF6 C; 1N33 C; 3VNR A; 5IT9 D; 4PRO C; 3K6R A; 3FCC A; 3O2E A; 2UUC C; 3NYQ A; 4LFA C; 3EER A; 5LMN C; 5BR8 C; 1T5H X; 1NYE A; 3KXW A; 3UX2 A; 3IPL A; 1BA3 A; 2UUB C; 2V7B A; 3CJE A; 3GR1 A; 4EAT A; 2OPL A; 4YY3 C; 4DG8 A; 2VQF C; 4I9F A; 4JI4 C; 5KEI A; 5BUQ A; 4D4G A; 2PT7 G; 4JI2 C; 1LCI A; 1MXB A; 3N54 B; 4TPS B; 2ONF A; 2D1R A; 4LE5 A; 3E7X A; 1IBM C; 2ZM6 C; 1UKK A; 1USP B; 4JI6 C; 2NCL A; 3PRO C; 2BJO A; 3AF6 A; 4RMN A; 2YWC A; 2QL8 A; 4LF9 C; 3UEB A; 2P20 A; 1HR0 C; 1LQL A; 4DCS A; 2D27 A; 1IB8 A; 1N2F A; 3GKU A; 3CQ1 A; 3ETO A; 3DAY A; 4DV0 C; 5LCI A; 2DPL A; 1FJG C; 1P7L A; 4X65 C; 4HPV A; 2D1S A; 2BH1 X; 5IFI A; 4LFC C; 2E5L C; 4BBY A; 2M5O A; 1ZB8 A; 2F4V C; 2CXC A; 2D1T A; 4DUZ C; 4DUY C; 2E0G A; 4X66 C; 1XRC A; 3B7W A; 4DV5 C; 3PBK A; 2UU9 C; 5JRH A; 3OTO C; 2HJG A; 4RM2 A; 1J5E C; 3GPC A; 4R0M A; 2M5H A; 4LF7 C; 4IZ6 A; 4GXQ A; 3GR0 A; 4PUI A; 1V60 A; 4L4Q A; 5BUR A; 4I9G A; 3A9V A; 4BSZ A; 4XX2 A; 2ASB A; 4JV5 C; 1YJ7 A; 1RY2 A; 3N2Q A; 1O90 A; 4JI1 C; 2Z51 A; 5CZX A; #chains in the Genus database with same CATH homology 3UX3 A; 2M5H A; 3CQ1 A; 3LNO A; 1WCJ A; 2M5O A; 1VEH A; 1UWD A; 2CU6 A; 3CQ3 A; 3CQ2 A; 1XHJ A; 3UX2 A; 1TH5 A; 2Z51 A; 2JNV A;
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