2Z51A

Crystal structure of arabidopsis cnfu involved in iron-sulfur cluster biosynthesis
Total Genus 51

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
51
sequence length
154
structure length
154
Chain Sequence
MVPLTEENVESVLDEIRPYLMSDGGNVALHEIDGNVVRVKLQGACGSCPSSTMTMKMGIERRLMEKIPEIVAVEALPDEETGLELNEENIEKVLEEIRPYLIGTADGSLDLVEIEDPIVKIRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLI
2040608010012014014012010080604020
01020304050Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (6-23)AH2 (52-66)3H1 (44-47)S1 (26-33)EMPTYTIV1 (32-35)S2 (36-42)S3 (72-75)TI1 (67-70)3H3 (98-100)S4 (108-115)TVIa1 (115-118)3H5 (126-129)TI2 (145-148)3H2 (49-51)3H4 (103-105)S5 (118-124)AH4 (131-144)AH3 (87-97)S6 (150-153)Updating...
connected with : NaN
molecule tags Metal transport
source organism Arabidopsis thaliana
publication title Structural Analysis of Arabidopsis CnfU Protein: An Iron-Sulfur Cluster Biosynthetic Scaffold in Chloroplasts.
pubmed doi rcsb
molecule keywords NifU-like protein 2, chloroplast
total genus 51
structure length 154
sequence length 154
ec nomenclature
pdb deposition date 2007-06-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01106 NifU NifU-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.300.130 Alpha Beta 2-Layer Sandwich GMP Synthetase; Chain A, domain 3 Fe-S cluster assembly (FSCA) 2z51A01
3.30.300.130 Alpha Beta 2-Layer Sandwich GMP Synthetase; Chain A, domain 3 Fe-S cluster assembly (FSCA) 2z51A02
2JNVA 1XHJA 3CQ2A 1WCJA 1TH5A 1UWDA 3UX2A 3LNOA 2CU6A 3CQ3A 3UX3A 1VEHA 2M5OA 3CQ1A 2M5HA 2Z51A
chains in the Genus database with same CATH superfamily
4EATA 2P20A 2V7BA 2E5LC 4GS5A 4NXNC 2E8EA 4JI1C 3J81D 1V60A 2ZZMA 1O93A 2CU6A 4DV6C 4JI8C 1EGAA 4DR2C 5IT9D 3C5EA 4DV1C 2Y27A 3LUSA 4DV0C 1N32C 3GKUA 2P2QA 4BC9A 4DCSA 4ZJZA 1USPB 3IEUA 4WS9A 4BSZA 2ASBA 2CY1A 2D28C 4KTVA 2P2MA 3IPLA 5A2QD 1N2FA 4DG9A 4LF5C 1RG9A 4YY3C 4RLQA 2PT7G 1XMQC 5KEIA 2Y4OA 1UKKA 4LF8C 1ZB8A 3RG2A 1PU1A 1MXCA 4DR7C 4ODJA 4WV3A 3B7WA 3TQIA 3PROC 1TH5A 1MDFA 1FUGA 4KHPC 4KTTA 4DR5C 5BUQA 2VQFC 1J5EC 2UXBC 2Z51A 5KYVA 1XRCA 1T5DX 4X62C 4L2ZA 2VSQA 4RVOA 1QM4A 2P2FA 3NPDA 1NYEA 1ZB9A 2PROA 4ZLPA 5BSUA 3TUFA 2P2JA 3JAMD 1MXAA 2AYAA 2E0GA 3EQ6A 2DYJA 4DV4C 2QVXX 2KDNA 1USPA 2D27A 5CZVA 1P4EC 3IEVA 1O92A 2E7GA 2YWCA 1HNWC 4PUIA 4DCTA 1XS3A 1V25A 3GR1A 4JI7C 5BSVA 1NY8A 4IZ6A 1YJ7A 4BBYA 2Y4NA 3R44A 5AE2A 3A26A 4MTNA 2NCLA 4JM1A 4OYCA 3ETCA 5BSTA 3VNSA 3J80D 3UX3A 1N34C 4LF4C 4RMNA 2XR1A 4DUZC 4JI0C 2QL8A 2P2BA 5ADZA 4NXMC 1PG4A 1KKGA 3DHVA 2CXCA 5K8FA 3AF6A 2KZFA 4OX9C 5JRHA 3E7WA 5IFIA 1P4EA 1BA3A 4MH4A 4DV2C 3KXWA 4XX2A 4LF7C 1O90A 2P02A 4I9GA 2ZZNA 4TPSB 3O2EA 5BSMA 4DV3C 1XMOC 4L7IA 3A9VA 3DAYA 3R9XA 4D4IA 2D1RA 1K0RA 1MDBA 1ULTA 1FJGC 3GPCA 3LGXA 1XNQC 4DR6C 3T1HC 1IBKC 4G1IA 4DR3C 3LNVA 4RM3A 4FUTA 3FCEA 4JI2C 3CJEA 2M5HA 1FLOA 3H2TA 5GTDA 1PA4A 3SO4A 1VLAA 3AY0A 3DLPX 1N36C 3I07A 5IWAC 5DV9A 2DHMA 4DR1C 1GPMA 4LFBC 2BH1X 1VEHA 4PUHA 4PZPA 5KYTA 3PESA 1WCJA 4I9FA 3NYRA 1IBLC 3CQ1A 2OPLB 1N33C 4JI3C 2ZM6C 1ML8A 2PN2A 4LFCC 4RM2A 2DPLA 2MMAB 4DUYC 2OO4A 2UUBC 3CW9A 1I94C 3N2QA 3R9WA 1MKYA 2D1QA 4X66C 4B3MC 4RVNA 4BCAA 3UX2A 4IR7A 5FLXD 3UZ0A 3TR3A 5BUSA 4LE5A 3PBKA 4B3TC 5LMNC 5E7QA 5AE3A 3CQ3A 4JV5C 4JYAC 1M6XC 1IBMC 3TDEA 4JI5C 1HNZC 1XNRC 2ATWA 2UU9C 5T8SA 4DV5C 4LF6C 2QW0X 3LNOA 1T5HX 5H9UA 2E8CA 4R1LA 2JMPA 3CQ2A 3G7SA 2ONFA 1AMUA 5BR8C 4HPVA 1HH2P 2YWBA 2WP0C 1P7LA 5LCIA 4R0MA 4LFAC 4GKKC 4BC7A 5AE1A 2VQEC 2UUCC 4PUGA 5K85A 2M5OA 4NDNA 1PG3A 4X64C 4L4QA 3IMLA 2BJOA 4GXQA 3E7XA 1WH9A 3NYQA 1V26A 2OPLA 3K6RA 2UXCC 4ISBA 3ETOA 3S82A 3N54B 2WD9A 4D56A 1M6XA 1LCIA 3UEBA 3VNQA 4D57A 2EGTA 3GR0A 3L95X 5BURA 1UWDA 3A4IA 4FUQA 1XRAA 4R1MA 1L2FA 1LQLA 1MD9A 4PROC 2HJGA 1WF3A 3A9UA 3T1YC 4G37A 3EERA 3LAXA 4JI6C 1HR0C 4RLFA 2QVYX 3VNRA 4B3SC 1MXBA 1XRBA 5A19A 5A1GA 4K0KC 2OBVA 2HHHC 4GKJC 3OTOC 4DCUA 5A1IA 2QVZX 4K0BA 5BSRA 3RV2A 2JNVA 3AF5A 2F4VC 3NI2A 1O9TA 3A25A 2E8FA 4YHHC 4PHTA 4G36A 4D4GA 2YCBA 3I08A 5BSWA 2YX1A 3L8CA 4X65C 1HNXC 4NOZA 2MM9A 1QWIA 4GXRA 5LMUC 4FTFA 1IB8A 1RY2A 4JI4C 2D7VA 1XHJA 2VZEA 5T8TA 4U5YD 3FCCA 4DCVA 1JOSA 3CW8X 4OXIA 2D1TA 3UOWA 2KZ0A 2UUAC 2D1SA 4AQYC 4DR4C 4DG8A 2MCQA 4B3RC 4DV7C 2UXDC 5CZXA 4LF9C
chains in the Genus database with same CATH topology
2JNVA 1XHJA 3CQ2A 1WCJA 1TH5A 1UWDA 3UX2A 3LNOA 2CU6A 3CQ3A 3UX3A 1VEHA 2M5OA 3CQ1A 2M5HA 2Z51A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JNV A;  1XHJ A;  3CQ2 A;  1WCJ A;  1TH5 A;  1UWD A;  3UX2 A;  3LNO A;  2CU6 A;  3CQ3 A;  3UX3 A;  1VEH A;  2M5O A;  3CQ1 A;  2M5H A;  2Z51 A; 
#chains in the Genus database with same CATH topology
 4EAT A;  2P20 A;  2V7B A;  2E5L C;  4GS5 A;  4NXN C;  2E8E A;  4JI1 C;  3J81 D;  1V60 A;  2ZZM A;  1O93 A;  2CU6 A;  4DV6 C;  4JI8 C;  1EGA A;  4DR2 C;  5IT9 D;  3C5E A;  4DV1 C;  2Y27 A;  3LUS A;  4DV0 C;  1N32 C;  3GKU A;  2P2Q A;  4BC9 A;  4DCS A;  4ZJZ A;  1USP B;  3IEU A;  4WS9 A;  4BSZ A;  2ASB A;  2CY1 A;  2D28 C;  4KTV A;  2P2M A;  3IPL A;  5A2Q D;  1N2F A;  4DG9 A;  4LF5 C;  1RG9 A;  4YY3 C;  4RLQ A;  2PT7 G;  1XMQ C;  5KEI A;  2Y4O A;  1UKK A;  4LF8 C;  1ZB8 A;  3RG2 A;  1PU1 A;  1MXC A;  4DR7 C;  4ODJ A;  4WV3 A;  3B7W A;  3TQI A;  3PRO C;  1TH5 A;  1MDF A;  1FUG A;  4KHP C;  4KTT A;  4DR5 C;  5BUQ A;  2VQF C;  1J5E C;  2UXB C;  2Z51 A;  5KYV A;  1XRC A;  1T5D X;  4X62 C;  4L2Z A;  2VSQ A;  4RVO A;  1QM4 A;  2P2F A;  3NPD A;  1NYE A;  1ZB9 A;  2PRO A;  4ZLP A;  5BSU A;  3TUF A;  2P2J A;  3JAM D;  1MXA A;  2AYA A;  2E0G A;  3EQ6 A;  2DYJ A;  4DV4 C;  2QVX X;  2KDN A;  1USP A;  2D27 A;  5CZV A;  1P4E C;  3IEV A;  1O92 A;  2E7G A;  2YWC A;  1HNW C;  4PUI A;  4DCT A;  1XS3 A;  1V25 A;  3GR1 A;  4JI7 C;  5BSV A;  1NY8 A;  4IZ6 A;  1YJ7 A;  4BBY A;  2Y4N A;  3R44 A;  5AE2 A;  3A26 A;  4MTN A;  2NCL A;  4JM1 A;  4OYC A;  3ETC A;  5BST A;  3VNS A;  3J80 D;  3UX3 A;  1N34 C;  4LF4 C;  4RMN A;  2XR1 A;  4DUZ C;  4JI0 C;  2QL8 A;  2P2B A;  5ADZ A;  4NXM C;  1PG4 A;  1KKG A;  3DHV A;  2CXC A;  5K8F A;  3AF6 A;  2KZF A;  4OX9 C;  5JRH A;  3E7W A;  5IFI A;  1P4E A;  1BA3 A;  4MH4 A;  4DV2 C;  3KXW A;  4XX2 A;  4LF7 C;  1O90 A;  2P02 A;  4I9G A;  2ZZN A;  4TPS B;  3O2E A;  5BSM A;  4DV3 C;  1XMO C;  4L7I A;  3A9V A;  3DAY A;  3R9X A;  4D4I A;  2D1R A;  1K0R A;  1MDB A;  1ULT A;  1FJG C;  3GPC A;  3LGX A;  1XNQ C;  4DR6 C;  3T1H C;  1IBK C;  4G1I A;  4DR3 C;  3LNV A;  4RM3 A;  4FUT A;  3FCE A;  4JI2 C;  3CJE A;  2M5H A;  1FLO A;  3H2T A;  5GTD A;  1PA4 A;  3SO4 A;  1VLA A;  3AY0 A;  3DLP X;  1N36 C;  3I07 A;  5IWA C;  5DV9 A;  2DHM A;  4DR1 C;  1GPM A;  4LFB C;  2BH1 X;  1VEH A;  4PUH A;  4PZP A;  5KYT A;  3PES A;  1WCJ A;  4I9F A;  3NYR A;  1IBL C;  3CQ1 A;  2OPL B;  1N33 C;  4JI3 C;  2ZM6 C;  1ML8 A;  2PN2 A;  4LFC C;  4RM2 A;  2DPL A;  2MMA B;  4DUY C;  2OO4 A;  2UUB C;  3CW9 A;  1I94 C;  3N2Q A;  3R9W A;  1MKY A;  2D1Q A;  4X66 C;  4B3M C;  4RVN A;  4BCA A;  3UX2 A;  4IR7 A;  5FLX D;  3UZ0 A;  3TR3 A;  5BUS A;  4LE5 A;  3PBK A;  4B3T C;  5LMN C;  5E7Q A;  5AE3 A;  3CQ3 A;  4JV5 C;  4JYA C;  1M6X C;  1IBM C;  3TDE A;  4JI5 C;  1HNZ C;  1XNR C;  2ATW A;  2UU9 C;  5T8S A;  4DV5 C;  4LF6 C;  2QW0 X;  3LNO A;  1T5H X;  5H9U A;  2E8C A;  4R1L A;  2JMP A;  3CQ2 A;  3G7S A;  2ONF A;  1AMU A;  5BR8 C;  4HPV A;  1HH2 P;  2YWB A;  2WP0 C;  1P7L A;  5LCI A;  4R0M A;  4LFA C;  4GKK C;  4BC7 A;  5AE1 A;  2VQE C;  2UUC C;  4PUG A;  5K85 A;  2M5O A;  4NDN A;  1PG3 A;  4X64 C;  4L4Q A;  3IML A;  2BJO A;  4GXQ A;  3E7X A;  1WH9 A;  3NYQ A;  1V26 A;  2OPL A;  3K6R A;  2UXC C;  4ISB A;  3ETO A;  3S82 A;  3N54 B;  2WD9 A;  4D56 A;  1M6X A;  1LCI A;  3UEB A;  3VNQ A;  4D57 A;  2EGT A;  3GR0 A;  3L95 X;  5BUR A;  1UWD A;  3A4I A;  4FUQ A;  1XRA A;  4R1M A;  1L2F A;  1LQL A;  1MD9 A;  4PRO C;  2HJG A;  1WF3 A;  3A9U A;  3T1Y C;  4G37 A;  3EER A;  3LAX A;  4JI6 C;  1HR0 C;  4RLF A;  2QVY X;  3VNR A;  4B3S C;  1MXB A;  1XRB A;  5A19 A;  5A1G A;  4K0K C;  2OBV A;  2HHH C;  4GKJ C;  3OTO C;  4DCU A;  5A1I A;  2QVZ X;  4K0B A;  5BSR A;  3RV2 A;  2JNV A;  3AF5 A;  2F4V C;  3NI2 A;  1O9T A;  3A25 A;  2E8F A;  4YHH C;  4PHT A;  4G36 A;  4D4G A;  2YCB A;  3I08 A;  5BSW A;  2YX1 A;  3L8C A;  4X65 C;  1HNX C;  4NOZ A;  2MM9 A;  1QWI A;  4GXR A;  5LMU C;  4FTF A;  1IB8 A;  1RY2 A;  4JI4 C;  2D7V A;  1XHJ A;  2VZE A;  5T8T A;  4U5Y D;  3FCC A;  4DCV A;  1JOS A;  3CW8 X;  4OXI A;  2D1T A;  3UOW A;  2KZ0 A;  2UUA C;  2D1S A;  4AQY C;  4DR4 C;  4DG8 A;  2MCQ A;  4B3R C;  4DV7 C;  2UXD C;  5CZX A;  4LF9 C; 
#chains in the Genus database with same CATH homology
 2JNV A;  1XHJ A;  3CQ2 A;  1WCJ A;  1TH5 A;  1UWD A;  3UX2 A;  3LNO A;  2CU6 A;  3CQ3 A;  3UX3 A;  1VEH A;  2M5O A;  3CQ1 A;  2M5H A;  2Z51 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.