3CQ2A

Structure of the dtdp-4-keto-l-rhamnose reductase related protein (other form) from thermus thermophilus hb8
Total Genus 22

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
96
structure length
96
Chain Sequence
LEAQAWALLEAVYDPELGLDVVNLGLIYDLVVEPPRAYVRMTLTTPGCPLHDSLGEAVRQALSRLPGVEEVEVEVTFEPPWTLARLSEKARRLLGW

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
3H1 (21-23)AH1 (7-16)S1 (19-20)EMPTYTIV3 (83-86)S5 (76-79)TIV1 (26-29)S3 (35-39)TI2 (28-31)TVIa1 (39-42)S4 (42-46)TVIII1 (49-52)TVIII2 (55-58)3H2 (89-91)AH3 (94-100)S2 (25-26)AH2 (59-70)TII1 (71-74)Updating...
connected with : NaN
molecule tags Oxidoreductase
source organism Thermus thermophilus
publication title Structure of the DTDP-4-Keto-L-Rhamnose Reductase related protein from Thermus Thermophilus HB8
rcsb
molecule keywords Putative uncharacterized protein TTHB138
total genus 22
structure length 96
sequence length 96
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2008-04-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01883 FeS_assembly_P Iron-sulfur cluster assembly protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.300.130 Alpha Beta 2-Layer Sandwich GMP Synthetase; Chain A, domain 3 Fe-S cluster assembly (FSCA) 3cq2A00
3CQ1A 3LNOA 3UX3A 1UWDA 3CQ2A 3UX2A 1VEHA 2CU6A 2JNVA 2M5HA 1TH5A 1XHJA 2Z51A 2M5OA 3CQ3A 1WCJA
chains in the Genus database with same CATH superfamily
5A1GA 2ZZNA 1NYEA 1NY8A 2QVZX 4LF4C 4D4IA 3TR3A 1LCIA 4D56A 1YJ7A 3TUFA 1MDFA 2JNVA 4I9FA 1UKKA 3AF5A 1WH9A 3CJEA 1PU1A 4EATA 5BSVA 5K8FA 4RLFA 5IFIA 4JYAC 4R1LA 3JAMD 1MXAA 4NXMC 1L2FA 4PHTA 4LF7C 1MKYA 3FCEA 4XX2A 2M5HA 2KZFA 4X65C 5CZVA 1FJGC 3J80D 2VQFC 4BC7A 4JI0C 3UEBA 1PG3A 4DCUA 3AF6A 2HHHC 5IT9D 4D57A 4LFCC 1IB8A 4B3TC 2P2BA 3LNOA 2UUCC 1T5HX 2OBVA 2D1QA 1HNZC 4WV3A 2QVXX 4D4GA 3VNQA 5T8TA 1N2FA 5T8SA 2D1TA 1IBMC 4L2ZA 4DR5C 5LMNC 1EGAA 3VNSA 1XRCA 2MM9A 2BJOA 1QM4A 5BSMA 4YHHC 1V25A 2Z51A 3TQIA 3UX3A 2YCBA 3AY0A 3SO4A 3A9UA 3LAXA 5FLXD 3B7WA 1P4EA 2D1RA 2ASBA 4L7IA 1XHJA 2V7BA 1MD9A 1I94C 4DUZC 5BSRA 1XMQC 2Y4NA 4K0BA 2E8EA 1JOSA 4DR1C 3CW9A 2DPLA 4DV6C 4RVNA 2KDNA 4K0KC 1O93A 3IPLA 4DV2C 4FUQA 2ONFA 3C5EA 3DAYA 3H2TA 4G36A 2E0GA 4GKKC 3KXWA 4YY3C 3LUSA 3TDEA 4R1MA 1MDBA 4X64C 4KHPC 1P7LA 4RM2A 2ATWA 1KKGA 2UXCC 1HH2P 4JI6C 2F4VC 3A26A 2D28C 5BSWA 5JRHA 4PROC 3RG2A 2CU6A 2OPLB 4LE5A 1WF3A 2DHMA 4DV0C 1MXCA 4DV5C 2QVYX 5AE2A 2M5OA 3J81D 1GPMA 4DR7C 1M6XA 4ZJZA 4PUHA 4LF9C 1ZB8A 4DV1C 1XNRC 3VNRA 1HNWC 1FLOA 3UOWA 4ISBA 1AMUA 4DR4C 3IMLA 3I08A 4PUGA 5BR8C 1MXBA 2UUAC 4B3RC 2PROA 3EERA 2EGTA 4OX9C 1USPA 5E7QA 4RLQA 2Y4OA 4BCAA 1K0RA 4JI2C 1O9TA 3NI2A 5DV9A 4JI4C 4JI3C 4DV4C 3UX2A 5A19A 1O90A 1N33C 1QWIA 2VSQA 1N34C 3I07A 5BURA 4JI5C 3DLPX 2D1SA 3GR0A 3CW8X 3E7WA 3S82A 4LF8C 5KYTA 4L4QA 3G7SA 2UXBC 1P4EC 1IBKC 2YX1A 2E8CA 1USPB 3R44A 2WD9A 3LGXA 2VZEA 4DG8A 5K85A 2UUBC 2P2FA 2DYJA 3CQ1A 2CY1A 1RG9A 1XMOC 3CQ2A 4FTFA 1T5DX 3ETCA 1XNQC 3A4IA 3PROC 4DR2C 2WP0C 2UU9C 2OPLA 2OO4A 2BH1X 4X62C 3GPCA 1V26A 4JI1C 3A25A 2Y27A 5A1IA 1ZB9A 4IZ6A 3UZ0A 2VQEC 3NYQA 1FUGA 4OYCA 3NPDA 4NXNC 3PESA 2YWBA 4DCSA 3N54B 5IWAC 5LMUC 1HR0C 2P20A 1VEHA 3IEUA 4RVOA 1V60A 1RY2A 4G1IA 1M6XC 2XR1A 4LF5C 2D7VA 4DV7C 1XRBA 3DHVA 1BA3A 2MCQA 4G37A 1N32C 3EQ6A 2KZ0A 4JV5C 3O2EA 3CQ3A 4ODJA 3E7XA 4RMNA 4GKJC 4BC9A 4WS9A 1WCJA 4OXIA 4DUYC 4LFBC 2QL8A 2E5LC 4RM3A 3ETOA 3OTOC 2E7GA 1HNXC 2AYAA 4BSZA 4DR6C 3K6RA 2NCLA 1ULTA 1N36C 4R0MA 4MH4A 3T1YC 4DR3C 4GXQA 3R9WA 1J5EC 5BSUA 5A2QD 1IBLC 4B3MC 1O92A 3GKUA 3T1HC 5KEIA 4B3SC 4JI8C 2P2JA 4KTTA 1ML8A 2JMPA 1PG4A 2PN2A 4BBYA 5AE3A 5BSTA 2QW0X 3N2QA 3R9XA 1XRAA 4X66C 5GTDA 2YWCA 1TH5A 2UXDC 3NYRA 1VLAA 4GXRA 5KYVA 5LCIA 4LFAC 4TPSB 5AE1A 3GR1A 4IR7A 4DV3C 5BUQA 4MTNA 3LNVA 2P2MA 3L95X 2CXCA 4PZPA 4GS5A 1XS3A 4KTVA 2E8FA 5BUSA 4U5YD 4ZLPA 4LF6C 5CZXA 2P02A 4I9GA 4AQYC 3L8CA 4JM1A 1LQLA 4DG9A 4NDNA 2HJGA 4HPVA 4JI7C 2PT7G 3IEVA 3PBKA 2P2QA 2D27A 5H9UA 1UWDA 4NOZA 3RV2A 2ZM6C 4PUIA 2MMAB 3A9VA 4DCTA 4FUTA 2ZZMA 3FCCA 5ADZA 1PA4A 4DCVA
chains in the Genus database with same CATH topology
3CQ1A 3LNOA 3UX3A 1UWDA 3CQ2A 3UX2A 1VEHA 2CU6A 2JNVA 2M5HA 1TH5A 1XHJA 2Z51A 2M5OA 3CQ3A 1WCJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CQ1 A;  3LNO A;  3UX3 A;  1UWD A;  3CQ2 A;  3UX2 A;  1VEH A;  2CU6 A;  2JNV A;  2M5H A;  1TH5 A;  1XHJ A;  2Z51 A;  2M5O A;  3CQ3 A;  1WCJ A; 
#chains in the Genus database with same CATH topology
 5A1G A;  2ZZN A;  1NYE A;  1NY8 A;  2QVZ X;  4LF4 C;  4D4I A;  3TR3 A;  1LCI A;  4D56 A;  1YJ7 A;  3TUF A;  1MDF A;  2JNV A;  4I9F A;  1UKK A;  3AF5 A;  1WH9 A;  3CJE A;  1PU1 A;  4EAT A;  5BSV A;  5K8F A;  4RLF A;  5IFI A;  4JYA C;  4R1L A;  3JAM D;  1MXA A;  4NXM C;  1L2F A;  4PHT A;  4LF7 C;  1MKY A;  3FCE A;  4XX2 A;  2M5H A;  2KZF A;  4X65 C;  5CZV A;  1FJG C;  3J80 D;  2VQF C;  4BC7 A;  4JI0 C;  3UEB A;  1PG3 A;  4DCU A;  3AF6 A;  2HHH C;  5IT9 D;  4D57 A;  4LFC C;  1IB8 A;  4B3T C;  2P2B A;  3LNO A;  2UUC C;  1T5H X;  2OBV A;  2D1Q A;  1HNZ C;  4WV3 A;  2QVX X;  4D4G A;  3VNQ A;  5T8T A;  1N2F A;  5T8S A;  2D1T A;  1IBM C;  4L2Z A;  4DR5 C;  5LMN C;  1EGA A;  3VNS A;  1XRC A;  2MM9 A;  2BJO A;  1QM4 A;  5BSM A;  4YHH C;  1V25 A;  2Z51 A;  3TQI A;  3UX3 A;  2YCB A;  3AY0 A;  3SO4 A;  3A9U A;  3LAX A;  5FLX D;  3B7W A;  1P4E A;  2D1R A;  2ASB A;  4L7I A;  1XHJ A;  2V7B A;  1MD9 A;  1I94 C;  4DUZ C;  5BSR A;  1XMQ C;  2Y4N A;  4K0B A;  2E8E A;  1JOS A;  4DR1 C;  3CW9 A;  2DPL A;  4DV6 C;  4RVN A;  2KDN A;  4K0K C;  1O93 A;  3IPL A;  4DV2 C;  4FUQ A;  2ONF A;  3C5E A;  3DAY A;  3H2T A;  4G36 A;  2E0G A;  4GKK C;  3KXW A;  4YY3 C;  3LUS A;  3TDE A;  4R1M A;  1MDB A;  4X64 C;  4KHP C;  1P7L A;  4RM2 A;  2ATW A;  1KKG A;  2UXC C;  1HH2 P;  4JI6 C;  2F4V C;  3A26 A;  2D28 C;  5BSW A;  5JRH A;  4PRO C;  3RG2 A;  2CU6 A;  2OPL B;  4LE5 A;  1WF3 A;  2DHM A;  4DV0 C;  1MXC A;  4DV5 C;  2QVY X;  5AE2 A;  2M5O A;  3J81 D;  1GPM A;  4DR7 C;  1M6X A;  4ZJZ A;  4PUH A;  4LF9 C;  1ZB8 A;  4DV1 C;  1XNR C;  3VNR A;  1HNW C;  1FLO A;  3UOW A;  4ISB A;  1AMU A;  4DR4 C;  3IML A;  3I08 A;  4PUG A;  5BR8 C;  1MXB A;  2UUA C;  4B3R C;  2PRO A;  3EER A;  2EGT A;  4OX9 C;  1USP A;  5E7Q A;  4RLQ A;  2Y4O A;  4BCA A;  1K0R A;  4JI2 C;  1O9T A;  3NI2 A;  5DV9 A;  4JI4 C;  4JI3 C;  4DV4 C;  3UX2 A;  5A19 A;  1O90 A;  1N33 C;  1QWI A;  2VSQ A;  1N34 C;  3I07 A;  5BUR A;  4JI5 C;  3DLP X;  2D1S A;  3GR0 A;  3CW8 X;  3E7W A;  3S82 A;  4LF8 C;  5KYT A;  4L4Q A;  3G7S A;  2UXB C;  1P4E C;  1IBK C;  2YX1 A;  2E8C A;  1USP B;  3R44 A;  2WD9 A;  3LGX A;  2VZE A;  4DG8 A;  5K85 A;  2UUB C;  2P2F A;  2DYJ A;  3CQ1 A;  2CY1 A;  1RG9 A;  1XMO C;  3CQ2 A;  4FTF A;  1T5D X;  3ETC A;  1XNQ C;  3A4I A;  3PRO C;  4DR2 C;  2WP0 C;  2UU9 C;  2OPL A;  2OO4 A;  2BH1 X;  4X62 C;  3GPC A;  1V26 A;  4JI1 C;  3A25 A;  2Y27 A;  5A1I A;  1ZB9 A;  4IZ6 A;  3UZ0 A;  2VQE C;  3NYQ A;  1FUG A;  4OYC A;  3NPD A;  4NXN C;  3PES A;  2YWB A;  4DCS A;  3N54 B;  5IWA C;  5LMU C;  1HR0 C;  2P20 A;  1VEH A;  3IEU A;  4RVO A;  1V60 A;  1RY2 A;  4G1I A;  1M6X C;  2XR1 A;  4LF5 C;  2D7V A;  4DV7 C;  1XRB A;  3DHV A;  1BA3 A;  2MCQ A;  4G37 A;  1N32 C;  3EQ6 A;  2KZ0 A;  4JV5 C;  3O2E A;  3CQ3 A;  4ODJ A;  3E7X A;  4RMN A;  4GKJ C;  4BC9 A;  4WS9 A;  1WCJ A;  4OXI A;  4DUY C;  4LFB C;  2QL8 A;  2E5L C;  4RM3 A;  3ETO A;  3OTO C;  2E7G A;  1HNX C;  2AYA A;  4BSZ A;  4DR6 C;  3K6R A;  2NCL A;  1ULT A;  1N36 C;  4R0M A;  4MH4 A;  3T1Y C;  4DR3 C;  4GXQ A;  3R9W A;  1J5E C;  5BSU A;  5A2Q D;  1IBL C;  4B3M C;  1O92 A;  3GKU A;  3T1H C;  5KEI A;  4B3S C;  4JI8 C;  2P2J A;  4KTT A;  1ML8 A;  2JMP A;  1PG4 A;  2PN2 A;  4BBY A;  5AE3 A;  5BST A;  2QW0 X;  3N2Q A;  3R9X A;  1XRA A;  4X66 C;  5GTD A;  2YWC A;  1TH5 A;  2UXD C;  3NYR A;  1VLA A;  4GXR A;  5KYV A;  5LCI A;  4LFA C;  4TPS B;  5AE1 A;  3GR1 A;  4IR7 A;  4DV3 C;  5BUQ A;  4MTN A;  3LNV A;  2P2M A;  3L95 X;  2CXC A;  4PZP A;  4GS5 A;  1XS3 A;  4KTV A;  2E8F A;  5BUS A;  4U5Y D;  4ZLP A;  4LF6 C;  5CZX A;  2P02 A;  4I9G A;  4AQY C;  3L8C A;  4JM1 A;  1LQL A;  4DG9 A;  4NDN A;  2HJG A;  4HPV A;  4JI7 C;  2PT7 G;  3IEV A;  3PBK A;  2P2Q A;  2D27 A;  5H9U A;  1UWD A;  4NOZ A;  3RV2 A;  2ZM6 C;  4PUI A;  2MMA B;  3A9V A;  4DCT A;  4FUT A;  2ZZM A;  3FCC A;  5ADZ A;  1PA4 A;  4DCV A; 
#chains in the Genus database with same CATH homology
 3CQ1 A;  3LNO A;  3UX3 A;  1UWD A;  3CQ2 A;  3UX2 A;  1VEH A;  2CU6 A;  2JNV A;  2M5H A;  1TH5 A;  1XHJ A;  2Z51 A;  2M5O A;  3CQ3 A;  1WCJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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