The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
72
|
sequence length |
326
|
structure length |
326
|
Chain Sequence |
VTATDYDTFVSERFGSIIQAVQTFTDSTKPGYAFIAAKPKSGLYLTTVQREDIKNYLKDYNLAPITPSIISPNYLFIKTNLKVTYALNKLQESEQWLEGQIIDKIDRYYTEDVEIFNSSFAKSKMLTYVDDADHSVIGSSATIQMVREVQNFYKTPEAGIKYNNQIKDRSMESNTFSFNSGRKVVNPDTGLEEDVLYDVRIVSTDRDSKGIGKVIIGPFASGDVTENENIQPYTGNDFNKLANSDGRDKYYVIGEINYPADVIYWNIAKINLTSEKFEVQTIELYSDPTDDVIFTRDGSLIVFENDLRPQYLTIDLEPISQLEHHH
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
The structure of gene product 6 of bacteriophage t4, the hinge-pin of the baseplate.
pubmed doi rcsb |
| molecule tags |
Viral protein
|
| source organism |
Enterobacteria phage t4
|
| molecule keywords |
Baseplate structural protein Gp6
|
| total genus |
72
|
| structure length |
326
|
| sequence length |
326
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2009-04-14 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | GMP Synthetase; Chain A, domain 3 | GMP Synthetase; Chain A, domain 3 |
#chains in the Genus database with same CATH superfamily 3H2T A; #chains in the Genus database with same CATH topology 4JI8 C; 2OO4 A; 3CQ3 A; 4PHT A; 1MDB A; 4YHH C; 4DV5 C; 4R1M A; 2E7G A; 4PUH A; 4X66 C; 5A19 A; 4LF7 C; 3NI2 A; 3A9U A; 4PZP A; 1VEH A; 2MCQ A; 2D1T A; 5CZX A; 5BUR A; 4LFB C; 2OPL B; 1O93 A; 2VQE C; 2QVZ X; 1N34 C; 2ONF A; 1XRC A; 4B3R C; 4DUZ C; 4DR1 C; 4JI1 C; 3IPL A; 2E8C A; 4L4Q A; 5BSW A; 2MM9 A; 3A9V A; 4RMN A; 4IR7 A; 4X62 C; 4BCA A; 1RY2 A; 3EQ6 A; 5ADZ A; 1YJ7 A; 1T5D X; 5KEI A; 5FLX D; 3GR1 A; 3LGX A; 3R9W A; 3DLP X; 4B3T C; 4HPV A; 1V25 A; 4FUQ A; 4LE5 A; 4OXI A; 3GR0 A; 3UZ0 A; 2YX1 A; 3CQ1 A; 4JI7 C; 4JI0 C; 3PES A; 5BR8 C; 3IEU A; 3NYR A; 2DPL A; 4D4I A; 3J81 D; 4JI5 C; 4JYA C; 2UXD C; 2BJO A; 5LMU C; 4BC9 A; 4OX9 C; 2WD9 A; 3E7W A; 3L95 X; 4D57 A; 5H9U A; 3VNQ A; 1N32 C; 2ZM6 C; 2QVY X; 3UX3 A; 2QL8 A; 5BUS A; 4DCV A; 4GKJ C; 1MXC A; 4BBY A; 4DR3 C; 2DHM A; 4D56 A; 5BSU A; 1XMO C; 1O90 A; 1FJG C; 3VNR A; 2CY1 A; 2OPL A; 1P4E C; 1XRB A; 1WCJ A; 2D1R A; 3LAX A; 1MDF A; 1MXB A; 4RM2 A; 1XNR C; 2D28 C; 4K0K C; 4RLF A; 3UX2 A; 4GXR A; 1M6X A; 2UXB C; 4L2Z A; 4L7I A; 4ZLP A; 1XRA A; 2HJG A; 5CZV A; 4XX2 A; 1WH9 A; 1IB8 A; 1RG9 A; 4LFC C; 2P2M A; 1I94 C; 3LNV A; 3C5E A; 4DCT A; 5DV9 A; 4LF9 C; 2Y4O A; 2QVX X; 1LQL A; 3T1H C; 4R0M A; 2AYA A; 2E8E A; 4JI4 C; 5LCI A; 1J5E C; 1PG3 A; 3R44 A; 1MD9 A; 3KXW A; 2E8F A; 2UU9 C; 1TH5 A; 1VLA A; 2NCL A; 2ZZN A; 3PBK A; 4YY3 C; 3TUF A; 4X64 C; 3PRO C; 4GKK C; 1L2F A; 4DV3 C; 1BA3 A; 1MXA A; 2QW0 X; 1LCI A; 4DG9 A; 3RG2 A; 1IBL C; 4G36 A; 1IBK C; 2YCB A; 3A4I A; 1PU1 A; 2PRO A; 4G1I A; 4RVO A; 1XHJ A; 2YWC A; 2D1Q A; 4B3S C; 2HHH C; 1V60 A; 4KHP C; 2YWB A; 1MKY A; 5BSM A; 4DR7 C; 1PG4 A; 3N2Q A; 4DR2 C; 3AF6 A; 1UKK A; 4DR6 C; 5A1G A; 5GTD A; 3G7S A; 5IFI A; 3ETC A; 2ZZM A; 4I9G A; 1P7L A; 3NPD A; 3IEV A; 2WP0 C; 5LMN C; 4MH4 A; 3CW8 X; 4K0B A; 4DR5 C; 4ODJ A; 1K0R A; 4LF4 C; 4FUT A; 3S82 A; 3R9X A; 2M5O A; 1HNZ C; 2DYJ A; 3O2E A; 1O92 A; 2ASB A; 2MMA B; 1T5H X; 2P2Q A; 3I07 A; 1HR0 C; 2E5L C; 4KTT A; 5KYT A; 2P2F A; 2JNV A; 4DV0 C; 4NXN C; 5E7Q A; 1HH2 P; 2UUC C; 3I08 A; 4BC7 A; 1XNQ C; 3H2T A; 2E0G A; 3VNS A; 1EGA A; 2P02 A; 4X65 C; 5T8S A; 4DV4 C; 2P2B A; 2XR1 A; 1P4E A; 1JOS A; 4IZ6 A; 3NYQ A; 5BSV A; 4WS9 A; 1ML8 A; 3T1Y C; 4DV1 C; 1KKG A; 5T8T A; 2CU6 A; 2Y4N A; 3IML A; 4AQY C; 4DCS A; 4U5Y D; 3FCE A; 4R1L A; 3TR3 A; 4PUG A; 2PN2 A; 4RM3 A; 4JI2 C; 1QM4 A; 5JRH A; 1HNX C; 1ULT A; 4NOZ A; 3FCC A; 4ISB A; 4NXM C; 5BST A; 3UOW A; 4JI6 C; 2BH1 X; 3AY0 A; 2Y27 A; 3GPC A; 5AE2 A; 2KZ0 A; 2UUB C; 4RLQ A; 4PRO C; 1O9T A; 3JAM D; 5IWA C; 2VSQ A; 5BSR A; 5IT9 D; 2D7V A; 4JI3 C; 4KTV A; 1N2F A; 4GS5 A; 2P20 A; 1QWI A; 5AE3 A; 3UEB A; 2ATW A; 3SO4 A; 1WF3 A; 1HNW C; 3CJE A; 4LF5 C; 2VZE A; 3LUS A; 1NY8 A; 2D27 A; 3A26 A; 2UUA C; 1USP B; 4I9F A; 4WV3 A; 5K85 A; 3ETO A; 3E7X A; 2D1S A; 3OTO C; 4GXQ A; 1PA4 A; 4DCU A; 1UWD A; 5A2Q D; 4LF6 C; 2P2J A; 3RV2 A; 2F4V C; 5KYV A; 2EGT A; 2CXC A; 2V7B A; 5K8F A; 1N36 C; 1IBM C; 2VQF C; 2M5H A; 5A1I A; 4G37 A; 3EER A; 1XS3 A; 3LNO A; 4EAT A; 5AE1 A; 1GPM A; 3AF5 A; 3B7W A; 3CQ2 A; 2OBV A; 1AMU A; 4DV2 C; 1M6X C; 4DR4 C; 1NYE A; 2PT7 G; 4BSZ A; 3CW9 A; 4DV6 C; 3TQI A; 4FTF A; 3J80 D; 1V26 A; 3DHV A; 4LFA C; 4PUI A; 3A25 A; 1XMQ C; 4TPS B; 3K6R A; 4ZJZ A; 4NDN A; 2UXC C; 1FLO A; 3TDE A; 4OYC A; 2JMP A; 4JV5 C; 4JM1 A; 1ZB8 A; 3N54 B; 4B3M C; 4LF8 C; 3DAY A; 4RVN A; 2KDN A; 3GKU A; 3L8C A; 1N33 C; 2Z51 A; 4MTN A; 4D4G A; 1USP A; 4DG8 A; 5BUQ A; 4DV7 C; 4DUY C; 2KZF A; 1ZB9 A; 1FUG A; #chains in the Genus database with same CATH homology 4JI8 C; 2OO4 A; 4PHT A; 1MDB A; 4YHH C; 4DV5 C; 4R1M A; 2E7G A; 4X66 C; 5A19 A; 4LF7 C; 3NI2 A; 3A9U A; 4PZP A; 5BUR A; 4LFB C; 2D1T A; 5CZX A; 2OPL B; 1O93 A; 2VQE C; 2QVZ X; 1N34 C; 2ONF A; 1XRC A; 4B3R C; 4DUZ C; 4DR1 C; 4JI1 C; 3IPL A; 2E8C A; 4L4Q A; 5BSW A; 3A9V A; 4RMN A; 4IR7 A; 4X62 C; 4BCA A; 1RY2 A; 3EQ6 A; 5ADZ A; 1YJ7 A; 1T5D X; 5KEI A; 5FLX D; 3GR1 A; 3LGX A; 3R9W A; 3DLP X; 4B3T C; 4HPV A; 1V25 A; 4FUQ A; 4LE5 A; 4OXI A; 3GR0 A; 3UZ0 A; 4JI7 C; 4JI0 C; 3PES A; 5BR8 C; 3IEU A; 3NYR A; 2DPL A; 4D4I A; 3J81 D; 4JI5 C; 4JYA C; 2UXD C; 2BJO A; 5LMU C; 4BC9 A; 4OX9 C; 2WD9 A; 3E7W A; 3L95 X; 4D57 A; 5H9U A; 3VNQ A; 1N32 C; 2ZM6 C; 2QVY X; 2QL8 A; 5BUS A; 4DCV A; 4GKJ C; 1MXC A; 4BBY A; 4DR3 C; 4D56 A; 5BSU A; 1XMO C; 1O90 A; 1FJG C; 3VNR A; 2CY1 A; 2OPL A; 1XRB A; 2D1R A; 3LAX A; 1MDF A; 1MXB A; 4RM2 A; 1XNR C; 2D28 C; 4K0K C; 4RLF A; 4GXR A; 2UXB C; 4L2Z A; 4L7I A; 4ZLP A; 1XRA A; 2HJG A; 5CZV A; 4XX2 A; 1WH9 A; 1RG9 A; 4LFC C; 2P2M A; 1I94 C; 3LNV A; 3C5E A; 4DCT A; 5DV9 A; 4LF9 C; 2Y4O A; 2QVX X; 1LQL A; 3T1H C; 4R0M A; 2AYA A; 2E8E A; 4JI4 C; 1J5E C; 1PG3 A; 3R44 A; 1MD9 A; 3KXW A; 2E8F A; 2UU9 C; 1VLA A; 3PBK A; 4YY3 C; 3TUF A; 4X64 C; 3PRO C; 4GKK C; 1L2F A; 4DV3 C; 1BA3 A; 1MXA A; 2QW0 X; 1LCI A; 4DG9 A; 3RG2 A; 1IBL C; 4G36 A; 1IBK C; 2YCB A; 3A4I A; 2PRO A; 4G1I A; 4RVO A; 2YWC A; 2D1Q A; 4B3S C; 2HHH C; 4KHP C; 2YWB A; 1MKY A; 5BSM A; 4DR7 C; 1PG4 A; 3N2Q A; 4DR2 C; 3AF6 A; 1UKK A; 4DR6 C; 5A1G A; 5GTD A; 3G7S A; 5IFI A; 3ETC A; 4I9G A; 1P7L A; 3NPD A; 3IEV A; 2WP0 C; 5LMN C; 4MH4 A; 3CW8 X; 4K0B A; 4DR5 C; 4ODJ A; 1K0R A; 4LF4 C; 4FUT A; 3S82 A; 3R9X A; 1HNZ C; 2DYJ A; 1O92 A; 2ASB A; 1T5H X; 2P2Q A; 3I07 A; 1HR0 C; 2E5L C; 4KTT A; 5KYT A; 2P2F A; 4DV0 C; 4NXN C; 5E7Q A; 1HH2 P; 2UUC C; 3I08 A; 4BC7 A; 1XNQ C; 3H2T A; 2E0G A; 3VNS A; 1EGA A; 2P02 A; 4X65 C; 5T8S A; 4DV4 C; 2P2B A; 2XR1 A; 1JOS A; 4IZ6 A; 3NYQ A; 5BSV A; 4WS9 A; 1ML8 A; 3T1Y C; 4DV1 C; 1KKG A; 5T8T A; 2Y4N A; 3IML A; 4AQY C; 4DCS A; 4U5Y D; 3FCE A; 4R1L A; 2PN2 A; 4RM3 A; 4JI2 C; 1QM4 A; 5JRH A; 1HNX C; 1ULT A; 4NOZ A; 3FCC A; 4ISB A; 4NXM C; 5BST A; 3UOW A; 4JI6 C; 2BH1 X; 2Y27 A; 3GPC A; 5AE2 A; 2UUB C; 4RLQ A; 4PRO C; 1O9T A; 3JAM D; 5IWA C; 2VSQ A; 5BSR A; 5IT9 D; 2D7V A; 4JI3 C; 4KTV A; 1N2F A; 4GS5 A; 2P20 A; 1QWI A; 5AE3 A; 2ATW A; 3SO4 A; 1WF3 A; 1HNW C; 3CJE A; 4LF5 C; 2VZE A; 3LUS A; 2D27 A; 2UUA C; 1USP B; 4I9F A; 4WV3 A; 5K85 A; 3ETO A; 3E7X A; 2D1S A; 3OTO C; 4GXQ A; 1PA4 A; 4DCU A; 5A2Q D; 4LF6 C; 2P2J A; 3RV2 A; 2F4V C; 5KYV A; 2EGT A; 2CXC A; 2V7B A; 5K8F A; 1N36 C; 1IBM C; 2VQF C; 5A1I A; 4G37 A; 3EER A; 4EAT A; 1GPM A; 3AF5 A; 3B7W A; 4DV2 C; 5AE1 A; 2OBV A; 1AMU A; 4DR4 C; 1NYE A; 2PT7 G; 4BSZ A; 3CW9 A; 4DV6 C; 3TQI A; 4FTF A; 3J80 D; 1V26 A; 3DHV A; 4LFA C; 1XMQ C; 4TPS B; 4ZJZ A; 4NDN A; 2UXC C; 3TDE A; 4OYC A; 2JMP A; 4JV5 C; 4JM1 A; 1ZB8 A; 3N54 B; 4B3M C; 4LF8 C; 3DAY A; 4RVN A; 3GKU A; 3L8C A; 1N33 C; 4MTN A; 4D4G A; 1USP A; 4DG8 A; 5BUQ A; 4DV7 C; 4DUY C; 2KZF A; 1ZB9 A; 1FUG A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
