3LNOA

Crystal structure of domain of unknown function duf59 from bacillus anthracis
Total Genus 30

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
106
structure length
106
Chain Sequence
NAMSQEAFENKLYANLEAVIDPELGVDIVNLGLVYDVTADENNNAVITMTMTSIGCPMAGQIVSDVKKVLSTNVPEVNEIEVNVVWNPPWSKERMSRMAKIALGIR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (2-13)EMPTYTI5 (38-41)TI7 (72-75)3H1 (14-16)S1 (18-19)TIV1 (25-28)TI1 (19-22)TI2 (20-23)TI6 (51-54)TI3 (26-29)TI4 (27-30)TI8 (89-92)TIV2 (84-87)S3 (34-37)S4 (43-46)S5 (78-79)AH2 (57-71)S2 (24-25)AH3 (97-103)Updating...
connected with : NaN
molecule tags Unknown function
source organism Bacillus anthracis
publication title Crystal Structure of Domain of Unknown Function DUF59 Bacillus anthracis
rcsb
molecule keywords Putative uncharacterized protein
total genus 30
structure length 106
sequence length 106
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2010-02-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01883 FeS_assembly_P Iron-sulfur cluster assembly protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.300.130 Alpha Beta 2-Layer Sandwich GMP Synthetase; Chain A, domain 3 Fe-S cluster assembly (FSCA) 3lnoA00
3CQ2A 1VEHA 3UX3A 3CQ1A 2M5OA 1XHJA 3LNOA 1TH5A 2M5HA 2JNVA 2Z51A 1UWDA 2CU6A 3CQ3A 3UX2A 1WCJA
chains in the Genus database with same CATH superfamily
5BSTA 3FCEA 1N33C 3PBKA 4JM1A 2UXDC 3A9VA 2UXCC 4RMNA 4PUIA 4X62C 4DV3C 1XHJA 4BC9A 5A19A 2DYJA 2E8CA 4DR3C 2QVYX 2M5OA 3TQIA 4BCAA 1XMQC 2V7BA 4DG8A 2PROA 4WV3A 3ETCA 4WS9A 2YWBA 3NYRA 4ZJZA 3CQ1A 3JAMD 3TDEA 4MH4A 3G7SA 4G1IA 4LFAC 4BC7A 4NXNC 2P2MA 3DHVA 3ETOA 2ZZNA 3EERA 4G36A 1I94C 1P7LA 3FCCA 4PHTA 1WCJA 3N54B 2P2BA 4DCSA 2AYAA 3RV2A 2XR1A 4LF9C 3UX3A 3AY0A 2M5HA 5BSWA 2F4VC 1XMOC 4DR6C 3C5EA 1KKGA 4B3RC 4NXMC 1HNWC 1HH2P 3IMLA 5LMNC 1ZB8A 3TR3A 3AF5A 5H9UA 5LMUC 3LGXA 2ONFA 2VQEC 3N2QA 1EGAA 4RLQA 4RM2A 3H2TA 1V60A 2UU9C 1JOSA 2P2FA 4AQYC 2CU6A 2D1TA 5KYVA 5A1GA 4DCTA 4DCUA 1RG9A 1T5DX 3GR1A 2D7VA 1MXAA 3A25A 2BH1X 3L8CA 2NCLA 4RLFA 2Z51A 4LF5C 4XX2A 2P20A 4U5YD 2QW0X 4FUTA 5A1IA 2QVXX 4HPVA 3OTOC 3I07A 4JYAC 2OPLA 4PUHA 1N34C 1ZB9A 4DR7C 4X65C 4RM3A 2ATWA 3B7WA 2UUBC 4DV6C 2WP0C 3GKUA 4L4QA 4D56A 4L7IA 4B3TC 2MCQA 4DV2C 4K0KC 4R0MA 1M6XC 1FLOA 4ODJA 1PU1A 4JV5C 1N32C 4DR1C 1O9TA 2VSQA 4FTFA 5KEIA 4YHHC 1XNQC 1PG3A 3CW9A 3NYQA 2YX1A 2HJGA 2E8FA 4KTTA 1J5EC 4BSZA 3NPDA 1O92A 1L2FA 3O2EA 2P02A 5CZVA 5IFIA 1XS3A 5BR8C 5LCIA 1MXBA 2QL8A 5DV9A 2E0GA 1M6XA 3CQ3A 4JI8C 4G37A 1IBLC 1O90A 3E7WA 1IBMC 3R9WA 4IR7A 3DAYA 1XRBA 4JI4C 2OPLB 4JI3C 1IBKC 4RVNA 4DV7C 4LFCC 2D27A 5BUSA 2E5LC 2DHMA 3CJEA 2MMAB 4GKJC 5T8SA 1GPMA 2P2QA 4GKKC 1T5HX 1NYEA 1NY8A 5KYTA 4RVOA 2Y4OA 5FLXD 1XRCA 4X64C 3IEVA 2MM9A 4R1MA 5BSUA 4I9GA 3KXWA 2YCBA 3UX2A 3CQ2A 4LFBC 4TPSB 4ZLPA 1UKKA 3VNSA 2D1QA 1AMUA 4LF6C 1QM4A 4DUZC 4GXRA 5K8FA 5A2QD 2E8EA 5ADZA 3UZ0A 4DUYC 3K6RA 2DPLA 2D1SA 1YJ7A 3GPCA 1IB8A 3J81D 1TH5A 1N36C 4DV1C 1LQLA 5BURA 4LF7C 4OYCA 1V26A 3DLPX 4JI6C 4DCVA 1ULTA 4DR5C 4EATA 1P4EC 2HHHC 1N2FA 3PROC 2OBVA 2YWCA 4KHPC 5AE2A 5T8TA 3L95X 1MDBA 3PESA 3SO4A 1UWDA 4LF8C 3IEUA 2KZ0A 4B3SC 4D4GA 2JMPA 2WD9A 4IZ6A 4PROC 2PT7G 4JI5C 2P2JA 4NDNA 5AE1A 5BUQA 2CXCA 4DR2C 1BA3A 4I9FA 3NI2A 3S82A 4NOZA 4OXIA 1FJGC 1XRAA 1WH9A 3UOWA 3LNOA 1ML8A 2KZFA 2VZEA 3E7XA 1P4EA 1USPA 1RY2A 2Y4NA 2UXBC 3GR0A 4JI0C 5IT9D 3R9XA 1QWIA 5BSRA 2KDNA 4MTNA 1HNZC 2OO4A 1V25A 3TUFA 1PG4A 1VEHA 3I08A 5K85A 2D28C 2D1RA 5BSMA 1LCIA 5GTDA 4OX9C 4DV5C 1HR0C 4KTVA 2QVZX 4R1LA 3R44A 1PA4A 3RG2A 3VNRA 4K0BA 3LNVA 2UUCC 5JRHA 4YY3C 2ZM6C 1FUGA 5AE3A 2JNVA 5E7QA 2ASBA 3AF6A 2PN2A 1MXCA 3LUSA 2ZZMA 3A4IA 2E7GA 4DR4C 4DV0C 2UUAC 1WF3A 2CY1A 3EQ6A 3LAXA 1USPB 4D4IA 1O93A 2Y27A 4GS5A 4X66C 4JI7C 5BSVA 3IPLA 1MDFA 2BJOA 5CZXA 4JI1C 3A26A 2VQFC 4LF4C 1K0RA 4LE5A 1HNXC 4B3MC 3CW8X 1MD9A 4ISBA 3A9UA 4BBYA 3J80D 1VLAA 5IWAC 3T1YC 4PUGA 2EGTA 4L2ZA 3T1HC 4JI2C 4DV4C 3VNQA 1MKYA 3UEBA 4FUQA 4DG9A 4D57A 4GXQA 1XNRC 4PZPA
chains in the Genus database with same CATH topology
3CQ2A 1VEHA 3UX3A 3CQ1A 2M5OA 1XHJA 3LNOA 1TH5A 2M5HA 2JNVA 2Z51A 1UWDA 2CU6A 3CQ3A 3UX2A 1WCJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CQ2 A;  1VEH A;  3UX3 A;  3CQ1 A;  2M5O A;  1XHJ A;  3LNO A;  1TH5 A;  2M5H A;  2JNV A;  2Z51 A;  1UWD A;  2CU6 A;  3CQ3 A;  3UX2 A;  1WCJ A; 
#chains in the Genus database with same CATH topology
 5BST A;  3FCE A;  1N33 C;  3PBK A;  4JM1 A;  2UXD C;  3A9V A;  2UXC C;  4RMN A;  4PUI A;  4X62 C;  4DV3 C;  1XHJ A;  4BC9 A;  5A19 A;  2DYJ A;  2E8C A;  4DR3 C;  2QVY X;  2M5O A;  3TQI A;  4BCA A;  1XMQ C;  2V7B A;  4DG8 A;  2PRO A;  4WV3 A;  3ETC A;  4WS9 A;  2YWB A;  3NYR A;  4ZJZ A;  3CQ1 A;  3JAM D;  3TDE A;  4MH4 A;  3G7S A;  4G1I A;  4LFA C;  4BC7 A;  4NXN C;  2P2M A;  3DHV A;  3ETO A;  2ZZN A;  3EER A;  4G36 A;  1I94 C;  1P7L A;  3FCC A;  4PHT A;  1WCJ A;  3N54 B;  2P2B A;  4DCS A;  2AYA A;  3RV2 A;  2XR1 A;  4LF9 C;  3UX3 A;  3AY0 A;  2M5H A;  5BSW A;  2F4V C;  1XMO C;  4DR6 C;  3C5E A;  1KKG A;  4B3R C;  4NXM C;  1HNW C;  1HH2 P;  3IML A;  5LMN C;  1ZB8 A;  3TR3 A;  3AF5 A;  5H9U A;  5LMU C;  3LGX A;  2ONF A;  2VQE C;  3N2Q A;  1EGA A;  4RLQ A;  4RM2 A;  3H2T A;  1V60 A;  2UU9 C;  1JOS A;  2P2F A;  4AQY C;  2CU6 A;  2D1T A;  5KYV A;  5A1G A;  4DCT A;  4DCU A;  1RG9 A;  1T5D X;  3GR1 A;  2D7V A;  1MXA A;  3A25 A;  2BH1 X;  3L8C A;  2NCL A;  4RLF A;  2Z51 A;  4LF5 C;  4XX2 A;  2P20 A;  4U5Y D;  2QW0 X;  4FUT A;  5A1I A;  2QVX X;  4HPV A;  3OTO C;  3I07 A;  4JYA C;  2OPL A;  4PUH A;  1N34 C;  1ZB9 A;  4DR7 C;  4X65 C;  4RM3 A;  2ATW A;  3B7W A;  2UUB C;  4DV6 C;  2WP0 C;  3GKU A;  4L4Q A;  4D56 A;  4L7I A;  4B3T C;  2MCQ A;  4DV2 C;  4K0K C;  4R0M A;  1M6X C;  1FLO A;  4ODJ A;  1PU1 A;  4JV5 C;  1N32 C;  4DR1 C;  1O9T A;  2VSQ A;  4FTF A;  5KEI A;  4YHH C;  1XNQ C;  1PG3 A;  3CW9 A;  3NYQ A;  2YX1 A;  2HJG A;  2E8F A;  4KTT A;  1J5E C;  4BSZ A;  3NPD A;  1O92 A;  1L2F A;  3O2E A;  2P02 A;  5CZV A;  5IFI A;  1XS3 A;  5BR8 C;  5LCI A;  1MXB A;  2QL8 A;  5DV9 A;  2E0G A;  1M6X A;  3CQ3 A;  4JI8 C;  4G37 A;  1IBL C;  1O90 A;  3E7W A;  1IBM C;  3R9W A;  4IR7 A;  3DAY A;  1XRB A;  4JI4 C;  2OPL B;  4JI3 C;  1IBK C;  4RVN A;  4DV7 C;  4LFC C;  2D27 A;  5BUS A;  2E5L C;  2DHM A;  3CJE A;  2MMA B;  4GKJ C;  5T8S A;  1GPM A;  2P2Q A;  4GKK C;  1T5H X;  1NYE A;  1NY8 A;  5KYT A;  4RVO A;  2Y4O A;  5FLX D;  1XRC A;  4X64 C;  3IEV A;  2MM9 A;  4R1M A;  5BSU A;  4I9G A;  3KXW A;  2YCB A;  3UX2 A;  3CQ2 A;  4LFB C;  4TPS B;  4ZLP A;  1UKK A;  3VNS A;  2D1Q A;  1AMU A;  4LF6 C;  1QM4 A;  4DUZ C;  4GXR A;  5K8F A;  5A2Q D;  2E8E A;  5ADZ A;  3UZ0 A;  4DUY C;  3K6R A;  2DPL A;  2D1S A;  1YJ7 A;  3GPC A;  1IB8 A;  3J81 D;  1TH5 A;  1N36 C;  4DV1 C;  1LQL A;  5BUR A;  4LF7 C;  4OYC A;  1V26 A;  3DLP X;  4JI6 C;  4DCV A;  1ULT A;  4DR5 C;  4EAT A;  1P4E C;  2HHH C;  1N2F A;  3PRO C;  2OBV A;  2YWC A;  4KHP C;  5AE2 A;  5T8T A;  3L95 X;  1MDB A;  3PES A;  3SO4 A;  1UWD A;  4LF8 C;  3IEU A;  2KZ0 A;  4B3S C;  4D4G A;  2JMP A;  2WD9 A;  4IZ6 A;  4PRO C;  2PT7 G;  4JI5 C;  2P2J A;  4NDN A;  5AE1 A;  5BUQ A;  2CXC A;  4DR2 C;  1BA3 A;  4I9F A;  3NI2 A;  3S82 A;  4NOZ A;  4OXI A;  1FJG C;  1XRA A;  1WH9 A;  3UOW A;  3LNO A;  1ML8 A;  2KZF A;  2VZE A;  3E7X A;  1P4E A;  1USP A;  1RY2 A;  2Y4N A;  2UXB C;  3GR0 A;  4JI0 C;  5IT9 D;  3R9X A;  1QWI A;  5BSR A;  2KDN A;  4MTN A;  1HNZ C;  2OO4 A;  1V25 A;  3TUF A;  1PG4 A;  1VEH A;  3I08 A;  5K85 A;  2D28 C;  2D1R A;  5BSM A;  1LCI A;  5GTD A;  4OX9 C;  4DV5 C;  1HR0 C;  4KTV A;  2QVZ X;  4R1L A;  3R44 A;  1PA4 A;  3RG2 A;  3VNR A;  4K0B A;  3LNV A;  2UUC C;  5JRH A;  4YY3 C;  2ZM6 C;  1FUG A;  5AE3 A;  2JNV A;  5E7Q A;  2ASB A;  3AF6 A;  2PN2 A;  1MXC A;  3LUS A;  2ZZM A;  3A4I A;  2E7G A;  4DR4 C;  4DV0 C;  2UUA C;  1WF3 A;  2CY1 A;  3EQ6 A;  3LAX A;  1USP B;  4D4I A;  1O93 A;  2Y27 A;  4GS5 A;  4X66 C;  4JI7 C;  5BSV A;  3IPL A;  1MDF A;  2BJO A;  5CZX A;  4JI1 C;  3A26 A;  2VQF C;  4LF4 C;  1K0R A;  4LE5 A;  1HNX C;  4B3M C;  3CW8 X;  1MD9 A;  4ISB A;  3A9U A;  4BBY A;  3J80 D;  1VLA A;  5IWA C;  3T1Y C;  4PUG A;  2EGT A;  4L2Z A;  3T1H C;  4JI2 C;  4DV4 C;  3VNQ A;  1MKY A;  3UEB A;  4FUQ A;  4DG9 A;  4D57 A;  4GXQ A;  1XNR C;  4PZP A; 
#chains in the Genus database with same CATH homology
 3CQ2 A;  1VEH A;  3UX3 A;  3CQ1 A;  2M5O A;  1XHJ A;  3LNO A;  1TH5 A;  2M5H A;  2JNV A;  2Z51 A;  1UWD A;  2CU6 A;  3CQ3 A;  3UX2 A;  1WCJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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