The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
40
|
sequence length |
130
|
structure length |
130
|
Chain Sequence |
SNARIMEEKALEVYDLIRTIRDPEKPNTLEELEVVSESCVEVQEINEEEYLVIIRFTPTVPHCSLATLIGLCLRVKLQRCLPFKHKLEIYISEGTHSTEEDINKQINDKERVAAAMENPNLREIVEQCVL
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
The mammalian DUF59 protein Fam96a forms two distinct types of domain-swapped dimer
doi rcsb |
| molecule tags |
Immune system
|
| source organism |
Homo sapiens
|
| molecule keywords |
MIP18 family protein FAM96A
|
| total genus |
40
|
| structure length |
130
|
| sequence length |
130
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2011-12-03 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01883 | FeS_assembly_P | Iron-sulfur cluster assembly protein |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | GMP Synthetase; Chain A, domain 3 | Fe-S cluster assembly (FSCA) |
#chains in the Genus database with same CATH superfamily 2JNV A; 1TH5 A; 3LNO A; 3CQ2 A; 1WCJ A; 2M5H A; 1XHJ A; 3UX3 A; 2M5O A; 3UX2 A; 1VEH A; 3CQ1 A; 3CQ3 A; 1UWD A; 2CU6 A; 2Z51 A; #chains in the Genus database with same CATH topology 1XMQ C; 4JI6 C; 3NYR A; 3AF6 A; 4WV3 A; 4L2Z A; 1J5E C; 3R9W A; 4EAT A; 4B3S C; 4JI2 C; 5BUR A; 4JI3 C; 1YJ7 A; 3IEU A; 3GKU A; 2OO4 A; 2HJG A; 2BJO A; 3IML A; 1P4E C; 2VZE A; 4GXR A; 2MM9 A; 4GKK C; 5KEI A; 2CU6 A; 2Z51 A; 1HNX C; 1MXA A; 1HNZ C; 2QVZ X; 5BSR A; 1O93 A; 4I9G A; 3CW8 X; 4IZ6 A; 4WS9 A; 3DAY A; 4DV7 C; 3DHV A; 1T5D X; 2UUC C; 2D1R A; 2MMA B; 5IT9 D; 4DR4 C; 1N33 C; 4GXQ A; 5AE2 A; 5BSM A; 2E8E A; 4LF6 C; 4DCT A; 2UU9 C; 2D1Q A; 2E8C A; 4AQY C; 2OPL A; 4X65 C; 4G37 A; 2P02 A; 1FUG A; 4DR7 C; 4RMN A; 3A4I A; 3TDE A; 3GPC A; 4R1M A; 1XNQ C; 1MKY A; 2D7V A; 1L2F A; 4OX9 C; 1VEH A; 4PRO C; 1V60 A; 5CZX A; 4R1L A; 1V25 A; 2V7B A; 2KDN A; 1PG3 A; 2UXB C; 2D1T A; 4BBY A; 5JRH A; 1LQL A; 4B3M C; 3UX3 A; 2M5H A; 1KKG A; 2P2B A; 2VSQ A; 4DR2 C; 2P20 A; 1N34 C; 2Y4N A; 3J81 D; 4LF9 C; 4RLQ A; 2VQF C; 2BH1 X; 3GR1 A; 4L4Q A; 4RM3 A; 3LNO A; 4DG8 A; 2D28 C; 4D4G A; 1P7L A; 1USP B; 5GTD A; 5T8S A; 3UZ0 A; 3T1H C; 3VNQ A; 1IBL C; 3A25 A; 1O90 A; 4JM1 A; 1QM4 A; 1IB8 A; 2M5O A; 4RLF A; 4X66 C; 1JOS A; 2KZF A; 3TQI A; 4DV2 C; 4BCA A; 5KYV A; 2PN2 A; 1IBK C; 1HH2 P; 2DPL A; 4ODJ A; 4JI8 C; 3FCC A; 2UXC C; 3TUF A; 2ASB A; 4NXN C; 4D4I A; 3PES A; 3L95 X; 2WP0 C; 1MDB A; 4D56 A; 1ULT A; 5K8F A; 1XRA A; 2QW0 X; 3IPL A; 1XHJ A; 2E8F A; 4DUY C; 1HR0 C; 3A26 A; 5LMN C; 2PRO A; 2ZZM A; 3EER A; 5E7Q A; 1HNW C; 4BSZ A; 2JNV A; 3PRO C; 2E7G A; 2KZ0 A; 2YX1 A; 3I07 A; 2VQE C; 4JI0 C; 3J80 D; 1N2F A; 4DCU A; 2ONF A; 3NYQ A; 5BUQ A; 2DYJ A; 5A2Q D; 4OYC A; 2UUB C; 3RV2 A; 4RVN A; 5A19 A; 2ZM6 C; 3VNS A; 1GPM A; 1WF3 A; 1N32 C; 3LGX A; 4NDN A; 3ETC A; 4DCV A; 2PT7 G; 1ML8 A; 1ZB9 A; 3RG2 A; 4K0B A; 4ZLP A; 4B3R C; 3LNV A; 5CZV A; 1M6X A; 4LF7 C; 5FLX D; 1BA3 A; 4KTT A; 1QWI A; 5IFI A; 4NXM C; 3UOW A; 3O2E A; 4DV0 C; 5IWA C; 1LCI A; 1FLO A; 5BSW A; 1XNR C; 2F4V C; 4RM2 A; 1XMO C; 1MXB A; 4OXI A; 5K85 A; 1AMU A; 3VNR A; 1M6X C; 2AYA A; 4I9F A; 4DG9 A; 1MD9 A; 1WCJ A; 3OTO C; 4DV5 C; 5BSU A; 5AE3 A; 5T8T A; 4JV5 C; 2CXC A; 5H9U A; 5DV9 A; 4DR6 C; 3N2Q A; 2QVY X; 4PUI A; 5ADZ A; 2YWC A; 5A1I A; 4JYA C; 4LF8 C; 4DR3 C; 3LUS A; 4BC7 A; 3H2T A; 1T5H X; 3NPD A; 2EGT A; 3L8C A; 5BST A; 3TR3 A; 4DV1 C; 1VLA A; 3ETO A; 4MH4 A; 4KHP C; 2MCQ A; 3UX2 A; 3SO4 A; 1RY2 A; 1UKK A; 1XS3 A; 2D1S A; 2E0G A; 3FCE A; 3K6R A; 3N54 B; 4LF4 C; 3A9V A; 5BSV A; 2P2J A; 1TH5 A; 4JI7 C; 2E5L C; 2OPL B; 4X64 C; 4LF5 C; 1O9T A; 3NI2 A; 2P2F A; 5LCI A; 4YY3 C; 2Y4O A; 4LFC C; 3E7X A; 1USP A; 3UEB A; 4HPV A; 4MTN A; 4GKJ C; 3I08 A; 4G1I A; 3T1Y C; 1O92 A; 1FJG C; 2P2Q A; 4JI4 C; 2OBV A; 3A9U A; 1EGA A; 3C5E A; 3R44 A; 4ZJZ A; 3E7W A; 3EQ6 A; 5BR8 C; 2ATW A; 1IBM C; 1WH9 A; 4DV4 C; 3S82 A; 2ZZN A; 1PA4 A; 4PUG A; 4GS5 A; 4G36 A; 3JAM D; 4DUZ C; 1UWD A; 4B3T C; 4JI1 C; 4LFA C; 2JMP A; 1NYE A; 3CQ3 A; 1NY8 A; 4KTV A; 4DV3 C; 3CJE A; 3DLP X; 3AF5 A; 4PUH A; 1PG4 A; 4DR1 C; 4DR5 C; 4K0K C; 2XR1 A; 4FTF A; 5KYT A; 3PBK A; 2P2M A; 4U5Y D; 4L7I A; 4DCS A; 2CY1 A; 4DV6 C; 4FUQ A; 2UXD C; 1K0R A; 2Y27 A; 4TPS B; 4X62 C; 4D57 A; 3CW9 A; 1V26 A; 4JI5 C; 3G7S A; 4LE5 A; 2WD9 A; 4FUT A; 3AY0 A; 1PU1 A; 4BC9 A; 5BUS A; 2QL8 A; 4PZP A; 2DHM A; 3CQ1 A; 1MXC A; 2D27 A; 1MDF A; 2YCB A; 3KXW A; 4PHT A; 1I94 C; 1XRB A; 5A1G A; 4ISB A; 4RVO A; 3CQ2 A; 2NCL A; 3GR0 A; 1N36 C; 4LFB C; 1RG9 A; 3LAX A; 3IEV A; 3R9X A; 5AE1 A; 3B7W A; 1P4E A; 2HHH C; 2QVX X; 4IR7 A; 2UUA C; 1ZB8 A; 4R0M A; 4YHH C; 4XX2 A; 5LMU C; 1XRC A; 2YWB A; 4NOZ A; #chains in the Genus database with same CATH homology 2JNV A; 1TH5 A; 3LNO A; 3CQ2 A; 1WCJ A; 2M5H A; 1XHJ A; 3UX3 A; 2M5O A; 3UX2 A; 1VEH A; 3CQ1 A; 3CQ3 A; 1UWD A; 2CU6 A; 2Z51 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
