The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
221
|
sequence length |
668
|
structure length |
656
|
Chain Sequence |
VHHVHPLPDSVPESEDLFAPPPRMQGKEGRPKPHIGPNYESYVKEWAKTVGPNSDEWWAAKARETLDWYDDFKTVRAGGFEHGDVQWFPEGTLNAAYNCLDRHYYKNPKKTAIIYEADEPSESREVSYEELMQETCRVANVLKSYGVKKGDAVSIYLPMTWQAAAAFLACARIGAIHSAVFAGFSAESLRDRVNDCECKVLITTDEGRRGGKTIATKQIVDAALQQCPLVENVLVLRRTGNKVPMTEGRDKWWDEECAKMPAYCPCERMASEDPLFILYTSGSTGKPKGVVHSTAGYLLGTALTLKYVFDAHPDDRFACMADIGWITGHSYIIYGPLANGITTAVFESTPVYPTPSRYWDFVDKWKATQLYTAPTAIRLLRRMGEDHVKNHDLSSLRVLGSVGEPINPEAWHWYNDFAGKNQCAIVDTYWMTETGSISIAPLPGAISTKPGSATFPFFGMDVDIIDPQTGQVLEGNDVEGVLVARRPWPSIARTVYRDHKRYLETYMKPYPGYFFFGDGAARDYDGYMWIKGRVDDVINVSGHRLSTAEVESALILHKGVAETAVVGCADDLTGQAVYAFVTMKPEFDLKATKEADLSKELAIQVRKVIGPFAAPKKIYLVSDLPKTRSGKIMRRVLRKIVAGEPQIVEEVKQKVT
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal structure of Acetyl-CoA Synthetase in complex with ATP and Acetyl-AMP from Cryptococcus neoformans H99
rcsb |
| molecule keywords |
Acetyl-coenzyme A synthetase
|
| molecule tags |
Ligase
|
| source organism |
Cryptococcus neoformans var. grubii serotype a (strain h99 / atcc 208821 / cbs 1
|
| total genus |
221
|
| structure length |
656
|
| sequence length |
668
|
| chains with identical sequence |
B, C
|
| ec nomenclature |
ec
6.2.1.1: Acetate--CoA ligase. |
| pdb deposition date | 2016-05-30 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00501 | AMP-binding | AMP-binding enzyme |
| A | PF13193 | AMP-binding_C | AMP-binding enzyme C-terminal domain |
| A | PF16177 | ACAS_N | Acetyl-coenzyme A synthetase N-terminus |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | GMP Synthetase; Chain A, domain 3 | GMP Synthetase; Chain A, domain 3 |
#chains in the Genus database with same CATH superfamily 4RM3 A; 5K8F A; 2QVX X; 2D1S A; 1AMU A; 1PG4 A; 3EQ6 A; 2D1R A; 3B7W A; 3VNR A; 3FCE A; 5GTD A; 5BSR A; 2D1T A; 5E7Q A; 2QVY X; 3E7W A; 5JRH A; 3ETC A; 3LAX A; 3LNV A; 1RY2 A; 4R1L A; 3IPL A; 4RMN A; 5IFI A; 2QW0 X; 3E7X A; 5BSW A; 4PZP A; 3VNS A; 3KXW A; 3RG2 A; 4DG9 A; 3CW8 X; 4RM2 A; 2Y27 A; 4DG8 A; 5BUR A; 2V7B A; 4ISB A; 3NI2 A; 1BA3 A; 3DAY A; 5BUS A; 1T5D X; 4D57 A; 1MDB A; 5BUQ A; 5KYV A; 5KYT A; 1PG3 A; 2P20 A; 3DLP X; 3L8C A; 2D1Q A; 3LGX A; 4RVO A; 3NYQ A; 1ULT A; 2WD9 A; 4GXQ A; 4G36 A; 5BSM A; 3A9U A; 1YJ7 A; 1MDF A; 4D4G A; 2Y4O A; 4IR7 A; 2QVZ X; 4D56 A; 4U5Y D; 4FUQ A; 3GPC A; 4OYC A; 4G37 A; 5BSU A; 4RVN A; 2P2F A; 3PBK A; 2VSQ A; 2Y4N A; 4RLF A; 3C5E A; 4GXR A; 4D4I A; 3CW9 A; 5DV9 A; 4RLQ A; 3A9V A; 2P2Q A; 4IZ6 A; 2VZE A; 4R1M A; 5K85 A; 4FUT A; 4R0M A; 2P2B A; 5KEI A; 1LCI A; 3R44 A; 3G7S A; 2P2M A; 4ZJZ A; 2P2J A; 4GS5 A; 4WV3 A; 3NYR A; 3FCC A; 5BSV A; 4OXI A; 3VNQ A; 1T5H X; 3DHV A; 4EAT A; 5BST A; 1MD9 A; #chains in the Genus database with same CATH topology 2Z51 A; 2QL8 A; 1VLA A; 1NYE A; 3B7W A; 4JI8 C; 4LF6 C; 4DV2 C; 3J80 D; 3E7W A; 3I07 A; 4NOZ A; 2UXB C; 3ETC A; 1JOS A; 3TDE A; 1XMQ C; 4L4Q A; 4B3R C; 2YWB A; 4PRO C; 3VNS A; 3N2Q A; 4DG9 A; 4LF5 C; 2DPL A; 3NI2 A; 5LMN C; 4I9F A; 4ZLP A; 5KYV A; 2P20 A; 2F4V C; 3LGX A; 4RVO A; 3CQ2 A; 2DYJ A; 3UX2 A; 2HHH C; 1GPM A; 4BSZ A; 4X62 C; 3PES A; 4GXQ A; 3CQ1 A; 3NPD A; 4WS9 A; 3ETO A; 4JI2 C; 4XX2 A; 1NY8 A; 1YJ7 A; 3RV2 A; 2Y4O A; 5IWA C; 4JI0 C; 2XR1 A; 3CJE A; 4G37 A; 4DCS A; 1XRA A; 3H2T A; 5BSU A; 1IB8 A; 1WH9 A; 4PUH A; 4BC9 A; 3IEU A; 4JI6 C; 2VSQ A; 4RLF A; 4DR3 C; 2E8E A; 3CW9 A; 2VQE C; 4LF9 C; 3K6R A; 4RLQ A; 3A9V A; 3L95 X; 4R1M A; 2KDN A; 4FUT A; 4JI7 C; 1N32 C; 2OPL B; 5CZV A; 3R9X A; 3N54 B; 2BJO A; 3R44 A; 2P2J A; 3NYR A; 3FCC A; 5LMU C; 2PRO A; 1UKK A; 5BST A; 3TQI A; 4LF7 C; 5A1G A; 5A19 A; 2QVX X; 2E7G A; 5AE3 A; 4KTV A; 3EQ6 A; 3VNR A; 3R9W A; 2D1T A; 1RG9 A; 4L7I A; 2E8F A; 4B3M C; 5JRH A; 1WCJ A; 3LAX A; 3LNV A; 4R1L A; 4RMN A; 5IFI A; 5H9U A; 4DR2 C; 2EGT A; 3E7X A; 4PZP A; 3KXW A; 3EER A; 3CW8 X; 1XRB A; 2PN2 A; 2WP0 C; 1FJG C; 2V7B A; 1TH5 A; 2AYA A; 1LQL A; 3DAY A; 4BC7 A; 1T5D X; 4D57 A; 1XNQ C; 4FTF A; 1V60 A; 4DR4 C; 4TPS B; 3LUS A; 3A26 A; 4GKJ C; 1M6X C; 2KZ0 A; 1PG3 A; 1O92 A; 1IBL C; 3T1Y C; 4JV5 C; 4NDN A; 1N2F A; 1XMO C; 3A9U A; 2UUA C; 1FLO A; 2QVZ X; 3UZ0 A; 2YWC A; 4G1I A; 1WF3 A; 3IML A; 2UXC C; 4RVN A; 3GR1 A; 4BCA A; 2P2F A; 1K0R A; 2D28 C; 4PUI A; 1VEH A; 4LE5 A; 2MCQ A; 2NCL A; 4I9G A; 1M6X A; 4DR7 C; 3C5E A; 1O90 A; 3I08 A; 2VQF C; 2ZZN A; 3JAM D; 2E8C A; 1V25 A; 2ZZM A; 2VZE A; 1IBM C; 2JNV A; 5K85 A; 4DV7 C; 5KEI A; 4B3S C; 3O2E A; 4ZJZ A; 4GS5 A; 4LF8 C; 4DCT A; 4OXI A; 3VNQ A; 3DHV A; 4DR1 C; 4MH4 A; 3S82 A; 5K8F A; 2D1S A; 4KHP C; 2KZF A; 5BSR A; 2UXD C; 1ZB9 A; 3SO4 A; 3TUF A; 5E7Q A; 2QVY X; 4JI5 C; 1RY2 A; 3IPL A; 1HNZ C; 3UOW A; 2E0G A; 3LNO A; 3RG2 A; 1MXC A; 5A1I A; 2Y27 A; 4DG8 A; 4ISB A; 2YX1 A; 5BUS A; 2UU9 C; 4JI3 C; 4X64 C; 2M5O A; 5ADZ A; 1I94 C; 3A25 A; 3DLP X; 2ZM6 C; 2D1Q A; 4AQY C; 3AF5 A; 4BBY A; 3NYQ A; 1ULT A; 2WD9 A; 5T8S A; 5BSM A; 2CXC A; 5BR8 C; 1HNX C; 1MDF A; 2M5H A; 2YCB A; 4D56 A; 4U5Y D; 4PHT A; 3AF6 A; 4OYC A; 5CZX A; 4B3T C; 1XS3 A; 2ONF A; 1FUG A; 4DUZ C; 3PBK A; 1P4E A; 2Y4N A; 4L2Z A; 4DUY C; 2D27 A; 4GXR A; 4D4I A; 2JMP A; 5DV9 A; 4X65 C; 3T1H C; 4IZ6 A; 1PU1 A; 5AE2 A; 1L2F A; 1N34 C; 4LFC C; 3TR3 A; 1ML8 A; 4R0M A; 1XHJ A; 1LCI A; 2P2M A; 4DV1 C; 4KTT A; 5IT9 D; 4JYA C; 1ZB8 A; 4K0B A; 4GKK C; 5FLX D; 4DV6 C; 4DV4 C; 4DCU A; 1HR0 C; 4JI1 C; 4K0K C; 2CU6 A; 4RM3 A; 4YY3 C; 1EGA A; 1AMU A; 2P02 A; 4ODJ A; 2OBV A; 1PG4 A; 1PA4 A; 2D1R A; 1USP B; 1IBK C; 5AE1 A; 3FCE A; 4X66 C; 5GTD A; 4LFB C; 4OX9 C; 5LCI A; 1XNR C; 2CY1 A; 2QW0 X; 2E5L C; 5BSW A; 2UUC C; 4DR6 C; 4RM2 A; 4NXN C; 1N36 C; 5BUR A; 1N33 C; 1O9T A; 1BA3 A; 2HJG A; 2PT7 G; 3GKU A; 1HH2 P; 4DV5 C; 2D7V A; 1MDB A; 1USP A; 3GR0 A; 5BUQ A; 1MXA A; 5KYT A; 4YHH C; 3L8C A; 3PRO C; 3UEB A; 2BH1 X; 1KKG A; 4DCV A; 4NXM C; 3IEV A; 1UWD A; 4G36 A; 4D4G A; 3AY0 A; 4IR7 A; 1O93 A; 4MTN A; 4FUQ A; 2UUB C; 4JI4 C; 3GPC A; 1QM4 A; 1P4E C; 2OO4 A; 4PUG A; 1QWI A; 2DHM A; 1XRC A; 4DR5 C; 4JM1 A; 5T8T A; 2P2Q A; 1V26 A; 2ASB A; 2ATW A; 3A4I A; 4HPV A; 3UX3 A; 1HNW C; 4DV0 C; 2P2B A; 1P7L A; 2MMA B; 1J5E C; 2OPL A; 5A2Q D; 3G7S A; 4LF4 C; 3OTO C; 3J81 D; 4LFA C; 4WV3 A; 1MKY A; 5BSV A; 4DV3 C; 2MM9 A; 1T5H X; 4EAT A; 3CQ3 A; 1MXB A; 1MD9 A; #chains in the Genus database with same CATH homology 2QL8 A; 1VLA A; 1NYE A; 3B7W A; 4JI8 C; 4LF6 C; 4DV2 C; 3J80 D; 3E7W A; 3I07 A; 4NOZ A; 2UXB C; 3ETC A; 1JOS A; 3TDE A; 1XMQ C; 4L4Q A; 4B3R C; 2YWB A; 4PRO C; 3VNS A; 3N2Q A; 4DG9 A; 4LF5 C; 2DPL A; 3NI2 A; 5LMN C; 4I9F A; 4ZLP A; 5KYV A; 2P20 A; 2F4V C; 3LGX A; 4RVO A; 2HHH C; 2DYJ A; 1GPM A; 4BSZ A; 4X62 C; 3PES A; 4GXQ A; 3NPD A; 4WS9 A; 3ETO A; 4JI2 C; 4XX2 A; 1YJ7 A; 3RV2 A; 2Y4O A; 5IWA C; 4JI0 C; 2XR1 A; 3CJE A; 4G37 A; 4DCS A; 1XRA A; 3H2T A; 5BSU A; 1WH9 A; 4BC9 A; 3IEU A; 4JI6 C; 2VSQ A; 4RLF A; 4DR3 C; 2E8E A; 3CW9 A; 2VQE C; 4LF9 C; 4RLQ A; 3A9V A; 3L95 X; 4R1M A; 4FUT A; 4JI7 C; 1N32 C; 2OPL B; 5CZV A; 3R9X A; 3N54 B; 2BJO A; 3R44 A; 2P2J A; 3NYR A; 3FCC A; 5LMU C; 2PRO A; 1UKK A; 5BST A; 3TQI A; 4LF7 C; 5A1G A; 5A19 A; 2QVX X; 2E7G A; 5AE3 A; 4KTV A; 3EQ6 A; 3VNR A; 3R9W A; 2D1T A; 1RG9 A; 4L7I A; 2E8F A; 4B3M C; 5JRH A; 3LAX A; 3LNV A; 4R1L A; 4RMN A; 5IFI A; 5H9U A; 4DR2 C; 2EGT A; 3E7X A; 4PZP A; 3KXW A; 3EER A; 3CW8 X; 1XRB A; 2PN2 A; 2WP0 C; 1FJG C; 2V7B A; 2AYA A; 1LQL A; 3DAY A; 4BC7 A; 1T5D X; 4D57 A; 1XNQ C; 4FTF A; 4DR4 C; 4TPS B; 3LUS A; 4GKJ C; 1PG3 A; 1O92 A; 1IBL C; 3T1Y C; 4JV5 C; 4NDN A; 1N2F A; 1XMO C; 3A9U A; 2UUA C; 2QVZ X; 3UZ0 A; 2YWC A; 4G1I A; 1WF3 A; 3IML A; 2UXC C; 4RVN A; 3GR1 A; 4BCA A; 2P2F A; 1K0R A; 2D28 C; 4LE5 A; 4I9G A; 4DR7 C; 3C5E A; 1O90 A; 3I08 A; 2VQF C; 3JAM D; 2E8C A; 1V25 A; 2VZE A; 1IBM C; 5K85 A; 4DV7 C; 5KEI A; 4B3S C; 4ZJZ A; 4GS5 A; 4LF8 C; 4DCT A; 4OXI A; 3VNQ A; 3DHV A; 4DR1 C; 4MH4 A; 3S82 A; 5K8F A; 2D1S A; 4KHP C; 2KZF A; 5BSR A; 2UXD C; 1ZB9 A; 3SO4 A; 3TUF A; 5E7Q A; 2QVY X; 4JI5 C; 1RY2 A; 3IPL A; 1HNZ C; 3UOW A; 2E0G A; 3RG2 A; 1MXC A; 5A1I A; 2Y27 A; 4DG8 A; 4ISB A; 5BUS A; 2UU9 C; 4JI3 C; 4X64 C; 5ADZ A; 1I94 C; 3DLP X; 2ZM6 C; 2D1Q A; 4AQY C; 3AF5 A; 4BBY A; 3NYQ A; 1ULT A; 2WD9 A; 5T8S A; 5BSM A; 2CXC A; 5BR8 C; 1HNX C; 1MDF A; 2YCB A; 4D56 A; 4U5Y D; 4PHT A; 3AF6 A; 4OYC A; 5CZX A; 4B3T C; 2ONF A; 1FUG A; 4DUZ C; 3PBK A; 2Y4N A; 4L2Z A; 4DUY C; 2D27 A; 4GXR A; 4D4I A; 2JMP A; 5DV9 A; 4X65 C; 3T1H C; 4IZ6 A; 5AE2 A; 1L2F A; 1N34 C; 4LFC C; 1ML8 A; 4R0M A; 1LCI A; 2P2M A; 4DV1 C; 4KTT A; 5IT9 D; 4JYA C; 1ZB8 A; 4K0B A; 4GKK C; 4DV6 C; 5FLX D; 4DV4 C; 4DCU A; 1HR0 C; 4JI1 C; 4K0K C; 4RM3 A; 4YY3 C; 1EGA A; 1AMU A; 2P02 A; 4ODJ A; 2OBV A; 1PG4 A; 1PA4 A; 2D1R A; 1USP B; 1IBK C; 5AE1 A; 3FCE A; 4X66 C; 5GTD A; 4LFB C; 4OX9 C; 1XNR C; 2CY1 A; 2QW0 X; 2E5L C; 5BSW A; 2UUC C; 4DR6 C; 4RM2 A; 4NXN C; 1N36 C; 5BUR A; 1N33 C; 1O9T A; 1BA3 A; 2HJG A; 2PT7 G; 3GKU A; 1HH2 P; 4DV5 C; 2D7V A; 1MDB A; 1USP A; 3GR0 A; 5BUQ A; 1MXA A; 5KYT A; 4YHH C; 3L8C A; 3PRO C; 2BH1 X; 1KKG A; 4DCV A; 4NXM C; 3IEV A; 4G36 A; 4D4G A; 4IR7 A; 1O93 A; 4MTN A; 4FUQ A; 2UUB C; 4JI4 C; 3GPC A; 1QM4 A; 2OO4 A; 1QWI A; 1XRC A; 4DR5 C; 4JM1 A; 5T8T A; 2P2Q A; 1V26 A; 2ASB A; 2ATW A; 3A4I A; 4HPV A; 1HNW C; 4DV0 C; 2P2B A; 1P7L A; 1J5E C; 2OPL A; 5A2Q D; 3G7S A; 4LF4 C; 3OTO C; 3J81 D; 4LFA C; 4WV3 A; 1MKY A; 5BSV A; 4DV3 C; 1T5H X; 4EAT A; 1MXB A; 1MD9 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
