2HKPA

Sumo protease ulp1 with the catalytic cysteine oxidized to a sulfenic acid
Total Genus 75

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
75
sequence length
221
structure length
218
Chain Sequence
GSLVPELNEKDDDQVQKALASRTQLMNRDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKSTPNTVAFNSFFYTNLSERGYQGVRRWMKRKKTQIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPNAMSFAILTDLQKYVMEESKHTIGEDFDLIHLDCPQQPNGYDGIYVCMNTLYGSADAPLDFDYKDAIRMRRFIAHLILTDALK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
source organism Saccharomyces cerevisiae
publication title Molecular basis of the redox regulation of SUMO proteases: a protective mechanism of intermolecular disulfide linkage against irreversible sulfhydryl oxidation
pubmed doi rcsb
molecule keywords Ubiquitin-like-specific protease 1
total genus 75
structure length 218
sequence length 221
ec nomenclature ec 3.4.22.68: Ulp1 peptidase.
pdb deposition date 2006-07-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02902 Peptidase_C48 Ulp1 protease family, C-terminal catalytic domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.418.20 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Actin-binding Protein, T-fimbrin; domain 1 2hkpA01
3.30.310.130 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Ubiquitin-related 2hkpA02
2HL9A 3EAYA 1EUVA 2HKPA 2HL8A
chains in the Genus database with same CATH superfamily
1PA7A 2HZSA 3DPUA 1T6AA 2LAEA 2QLVA 1AISA 1B9KA 1CDWA 1PVSA 2V8QA 2IV8A 1EBMA 4C7PA 1WYNA 1PXYA 1UJOA 2Y8QA 1LWWA 2EYNA 2QJZA 1KYUA 3ENCA 1SH5A 3UW2A 1LXTA 1N3CA 3BKQX 1D3UA 5JMVD 1YQKA 3OC3C 1JFIC 2NVMA 5J8EA 2FKMX 1TBPA 5L0OA 1C9BB 3CO1A 3PMGA 1NH2A 2R0OA 4EALA 1KY7A 2G30A 3IH7A 2Z8UA 2XHIA 4MRQA 1P5SA 1UL7A 2DKCA 1M5Q1 4EAGA 3CWAA 2NWVA 5BMPA 3CVSA 3CW7A 2EYIA 2D0AA 3F10A 2VZGB 2IGPA 1UT7A 3CWSA 2D87A 1HU0A 2VZIB 3VP7A 1C4GA 1DXXA 1KYFA 5IYCP 4IL8A 3JAKM 2PWWA 3CWTA 2EQOA 5A36A 1PCZA 4D7RA 1QN5A 2I5WA 4ROEB 5EPCA 1KO9A 2MZ8A 4B0AA 1FN7A 1QN7A 4HJHA 3VN5A 4TPSA 5A4BA 2D86A 2DKAA 4D7QA 1QN9A 4ROCB 2NOLA 3RPJA 4WZSD 2OOXA 3N89A 4DULA 2HL8A 4I8OA 3I6XA 3OGDA 1NGMA 3HOCA 1N3AA 1WYRA 1UT4A 1VOKA 3T4NA 1YQLA 1KFQA 1VKLA 3REPB 1QN3A 5KL0A 2D85A 2VZCA 2D89A 5A38A 2V9JA 2QRCA 4CFFA 1WYOA 2NOIA 4PY5A 1K2YX 1WJOA 4LVPA 3D7QA 1TGHA 2D88A 1WKUA 2YA3A 4TXIA 5IYBP 1SH6A 1QNBA 5FMTA 5A37A 1QN4A 1WYLA 2WA6A 2K2RA 2YRNA 3OSTA 1V5SA 1PCJX 1P2XA 2DKDA 3CWUA 1JDYA 2R5XA 1TJTA 2NOHA 4RODB 1NVPA 4EJYA 1WYQA 3RSMA 2VE7A 1M3QA 2QR1A 1N39A 1QTPA 1QNCA 1QNAA 3TE5A 1MPGA 1VTLE 1M3HA 1UEGA 1VKAA 1J3MA 2HKPA 4Q11A 3D4VA 1KFIA 2MJ7A 2O3OA 5F9CA 1TBAB 2FUVA 2JPIA 4EDNA 4EAJA 1VTOA 3SNSA 2NOBA 5BMNA 2IV9A 1MB8A 1Q9UA 5IYDP 3OH6A 3OSMA 2L3GA 5FMUA 2VZDA 3ASMA 1QTSA 2WDTA 3F7PA 3KTUA 1PZDA 2WA7A 1H67A 1QAGA 3HOPA 5AN4A 1BHDA 3ENOC 1WIXA 1YTFA 2WE6A 1V5KA 2HL9A 2F7LA 4WXAA 2FKFA 2D0CA 1WQAA 2H4LX 4TXKA 2DK9A 3NA5A 3F0ZA 2NOEA 3HORA 2WA5A 2NOZA 4EAKA 2R8UA 3I3WA 1QN8A 3TDHA 2QREA 2JHJA 1YQMA 1RT8A 2K3SA 2VE7C 3C04A 2JV9A 1LWVA 1YQRA 1WJWA 1XSZA 1W80A 1EUVA 1BKRA 2E9KA 4EDLA 2NOFA 1P5GX 2QRDA 2ZFDB 5HSHA 2Z0FA 2JOIA 2EE7A 3HS8A 4B7LA 4EDMA 4EJZA 4WX8A 3KY9A 4BJUA 1C47A 5BVRA 3OLPA 1P5DX 1VOLB 3CVTA 3OH9A 3ULXA 4Q57B 3FERA 1YTBA 2HZMA 1RM1A 1AA2A 3JALM 5JN5A 1E42A 1KY6A 1QN6A 2Y8LA 2NLVA 1WYMA 1PCMX 2RR8A 3EAYA 3HS9A 3OSEA 2V92A 1DIZA 2YH5A 3H1ZA 3I0XA 4EAIA 3OCIA 2EHBD 4LVRA 1AOAA 3I0WA 1MP9A 3KMUB 4DDPA 2D0BA 3DPTA 2WFNA 1QNEA 2H5AX 1KYDA 3EIKA 1R4XA 2FGTA 4Q59A 2JHNA 1K35A 4QG5A 1TUOA 3PDKA 3JARM 2QJXA 1LWYA 1WYPA 3KRMA 4Q58A 2VJ0A 2OOYA 3KMWB
chains in the Genus database with same CATH topology
4LVPA 2HL9A 2EQOA 3EAYA 4DDPA 2VE7C 4LVRA 5FMUA 1EUVA 2HKPA 2IGPA 3VP7A 2VE7A 5FMTA 2HL8A 2WDTA 2WE6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HL9 A;  3EAY A;  1EUV A;  2HKP A;  2HL8 A; 
#chains in the Genus database with same CATH topology
 1PA7 A;  2HZS A;  3DPU A;  1T6A A;  2LAE A;  2QLV A;  1AIS A;  1B9K A;  1CDW A;  1PVS A;  2V8Q A;  2IV8 A;  1EBM A;  4C7P A;  1WYN A;  1PXY A;  1UJO A;  2Y8Q A;  1LWW A;  2EYN A;  2QJZ A;  1KYU A;  3ENC A;  1SH5 A;  3UW2 A;  1LXT A;  1N3C A;  3BKQ X;  1D3U A;  5JMV D;  1YQK A;  3OC3 C;  1JFI C;  2NVM A;  5J8E A;  2FKM X;  1TBP A;  5L0O A;  1C9B B;  3CO1 A;  3PMG A;  1NH2 A;  2R0O A;  4EAL A;  1KY7 A;  2G30 A;  3IH7 A;  2Z8U A;  2XHI A;  4MRQ A;  1P5S A;  1UL7 A;  2DKC A;  1M5Q 1;  4EAG A;  3CWA A;  2NWV A;  5BMP A;  3CVS A;  3CW7 A;  2EYI A;  2D0A A;  3F10 A;  2VZG B;  2IGP A;  1UT7 A;  3CWS A;  2D87 A;  1HU0 A;  2VZI B;  3VP7 A;  1C4G A;  1DXX A;  1KYF A;  5IYC P;  4IL8 A;  3JAK M;  2PWW A;  3CWT A;  2EQO A;  5A36 A;  1PCZ A;  4D7R A;  1QN5 A;  2I5W A;  4ROE B;  5EPC A;  1KO9 A;  2MZ8 A;  4B0A A;  1FN7 A;  1QN7 A;  4HJH A;  3VN5 A;  4TPS A;  5A4B A;  2D86 A;  2DKA A;  4D7Q A;  1QN9 A;  4ROC B;  2NOL A;  3RPJ A;  4WZS D;  2OOX A;  3N89 A;  4DUL A;  2HL8 A;  4I8O A;  3I6X A;  3OGD A;  1NGM A;  3HOC A;  1N3A A;  1WYR A;  1UT4 A;  1VOK A;  3T4N A;  1YQL A;  1KFQ A;  1VKL A;  3REP B;  1QN3 A;  5KL0 A;  2D85 A;  2VZC A;  2D89 A;  5A38 A;  2V9J A;  2QRC A;  4CFF A;  1WYO A;  2NOI A;  4PY5 A;  1K2Y X;  1WJO A;  4LVP A;  3D7Q A;  1TGH A;  2D88 A;  1WKU A;  2YA3 A;  4TXI A;  5IYB P;  1SH6 A;  1QNB A;  5FMT A;  5A37 A;  1QN4 A;  1WYL A;  2WA6 A;  2K2R A;  2YRN A;  3OST A;  1V5S A;  1PCJ X;  1P2X A;  2DKD A;  3CWU A;  1JDY A;  2R5X A;  1TJT A;  2NOH A;  4ROD B;  1NVP A;  4EJY A;  1WYQ A;  3RSM A;  2VE7 A;  1M3Q A;  2QR1 A;  1N39 A;  1QTP A;  1QNC A;  1QNA A;  3TE5 A;  1MPG A;  1VTL E;  1M3H A;  1UEG A;  1VKA A;  1J3M A;  2HKP A;  4Q11 A;  3D4V A;  1KFI A;  2MJ7 A;  2O3O A;  5F9C A;  1TBA B;  2FUV A;  2JPI A;  4EDN A;  4EAJ A;  1VTO A;  3SNS A;  2NOB A;  5BMN A;  2IV9 A;  1MB8 A;  1Q9U A;  5IYD P;  3OH6 A;  3OSM A;  2L3G A;  5FMU A;  2VZD A;  3ASM A;  1QTS A;  2WDT A;  3F7P A;  3KTU A;  1PZD A;  2WA7 A;  1H67 A;  1QAG A;  3HOP A;  5AN4 A;  1BHD A;  3ENO C;  1WIX A;  1YTF A;  2WE6 A;  1V5K A;  2HL9 A;  2F7L A;  4WXA A;  2FKF A;  2D0C A;  1WQA A;  2H4L X;  4TXK A;  2DK9 A;  3NA5 A;  3F0Z A;  2NOE A;  3HOR A;  2WA5 A;  2NOZ A;  4EAK A;  2R8U A;  3I3W A;  1QN8 A;  3TDH A;  2QRE A;  2JHJ A;  1YQM A;  1RT8 A;  2K3S A;  2VE7 C;  3C04 A;  2JV9 A;  1LWV A;  1YQR A;  1WJW A;  1XSZ A;  1W80 A;  1EUV A;  1BKR A;  2E9K A;  4EDL A;  2NOF A;  1P5G X;  2QRD A;  2ZFD B;  5HSH A;  2Z0F A;  2JOI A;  2EE7 A;  3HS8 A;  4B7L A;  4EDM A;  4EJZ A;  4WX8 A;  3KY9 A;  4BJU A;  1C47 A;  5BVR A;  3OLP A;  1P5D X;  1VOL B;  3CVT A;  3OH9 A;  3ULX A;  4Q57 B;  3FER A;  1YTB A;  2HZM A;  1RM1 A;  1AA2 A;  3JAL M;  5JN5 A;  1E42 A;  1KY6 A;  1QN6 A;  2Y8L A;  2NLV A;  1WYM A;  1PCM X;  2RR8 A;  3EAY A;  3HS9 A;  3OSE A;  2V92 A;  1DIZ A;  2YH5 A;  3H1Z A;  3I0X A;  4EAI A;  3OCI A;  2EHB D;  4LVR A;  1AOA A;  3I0W A;  1MP9 A;  3KMU B;  4DDP A;  2D0B A;  3DPT A;  2WFN A;  1QNE A;  2H5A X;  1KYD A;  3EIK A;  1R4X A;  2FGT A;  4Q59 A;  2JHN A;  1K35 A;  4QG5 A;  1TUO A;  3PDK A;  3JAR M;  2QJX A;  1LWY A;  1WYP A;  3KRM A;  4Q58 A;  2VJ0 A;  2OOY A;  3KMW B; 
#chains in the Genus database with same CATH homology
 4LVP A;  2HL9 A;  2EQO A;  3EAY A;  4DDP A;  2VE7 C;  4LVR A;  5FMU A;  1EUV A;  2HKP A;  2IGP A;  3VP7 A;  2VE7 A;  5FMT A;  2HL8 A;  2WDT A;  2WE6 A; 
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similar chains in the pdb database (?% sequence similarity)

 
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