The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
71
|
sequence length |
220
|
structure length |
217
|
Chain Sequence |
SLVPELNEKDDDQVQKALASRENTQLMNRIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKSTPNTVAFNSFFYTNLSERGYQGVRRWMKRKKTQIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPNAMSFAILTDLQKYVMEESKHTIGEDFDLIHLDCPQQPNGYDGIYVCMNTLYGSADAPLDFDYKDAIRMRRFIAHLILTDALK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Hydrolase
|
| source organism |
Saccharomyces cerevisiae
|
| publication title |
Molecular basis of the redox regulation of SUMO proteases: a protective mechanism of intermolecular disulfide linkage against irreversible sulfhydryl oxidation
pubmed doi rcsb |
| molecule keywords |
Ubiquitin-like-specific protease 1
|
| total genus |
71
|
| structure length |
217
|
| sequence length |
220
|
| ec nomenclature |
ec
3.4.22.68: Ulp1 peptidase. |
| pdb deposition date | 2006-07-06 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF02902 | Peptidase_C48 | Ulp1 protease family, C-terminal catalytic domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Actin-binding Protein, T-fimbrin; domain 1 | Actin-binding Protein, T-fimbrin; domain 1 | ||
| Alpha Beta | 2-Layer Sandwich | TATA-Binding Protein | Ubiquitin-related |
#chains in the Genus database with same CATH superfamily 3EAY A; 2HL9 A; 1EUV A; 2HKP A; 2HL8 A; #chains in the Genus database with same CATH topology 5EPC A; 2D0B A; 2YRN A; 2VZG B; 3DPU A; 2MJ7 A; 1SH6 A; 2K3S A; 3OH9 A; 4BJU A; 2V9J A; 2QJX A; 2FKF A; 4EAK A; 2F7L A; 1CDW A; 1WJO A; 2O3O A; 1E42 A; 3ULX A; 1EUV A; 1WYM A; 1B9K A; 1K2Y X; 4IL8 A; 3PMG A; 3SNS A; 1WYO A; 2RR8 A; 1DIZ A; 1LWY A; 3KMU B; 2NWV A; 1TGH A; 4CFF A; 4EDL A; 4WX8 A; 3KRM A; 2K2R A; 1BHD A; 1PCJ X; 1QNC A; 1QN9 A; 1WKU A; 1PXY A; 3F7P A; 2NVM A; 1QN3 A; 5L0O A; 1WQA A; 4TXI A; 1VTL E; 1N3A A; 1UEG A; 1Q9U A; 4Q59 A; 2VE7 A; 1D3U A; 2EYN A; 3I6X A; 3BKQ X; 3D7Q A; 3OLP A; 1NH2 A; 2E9K A; 3OSE A; 5JN5 A; 2WFN A; 3REP B; 1V5S A; 1MP9 A; 2R0O A; 1BKR A; 3NA5 A; 2H4L X; 3CVS A; 1KFI A; 2D85 A; 2IV9 A; 1PA7 A; 1UJO A; 2JOI A; 2WA5 A; 3OCI A; 4C7P A; 1YQM A; 3VP7 A; 4Q11 A; 1PCM X; 1P5D X; 1QNE A; 2D88 A; 3H1Z A; 4EAG A; 4PY5 A; 3D4V A; 1RT8 A; 2FUV A; 5FMT A; 4ROC B; 1DXX A; 1NVP A; 2FGT A; 4I8O A; 4EDN A; 1KYU A; 2YA3 A; 4LVR A; 2JHN A; 1P5S A; 2MZ8 A; 1YTF A; 4EAJ A; 1KY6 A; 1JFI C; 2QJZ A; 3OST A; 4HJH A; 3CW7 A; 2Y8L A; 3JAL M; 1YQK A; 2DKC A; 1YQR A; 2Z8U A; 1AOA A; 1T6A A; 1PCZ A; 1AIS A; 3OH6 A; 1QTS A; 2EHB D; 3CO1 A; 2WA7 A; 2D87 A; 2VZI B; 4Q57 B; 3CVT A; 1WYQ A; 1LXT A; 1WYR A; 2HZS A; 1EBM A; 2VZC A; 2NOI A; 4EJZ A; 4ROE B; 2HZM A; 1TJT A; 3VN5 A; 1WIX A; 1C47 A; 5FMU A; 1M3H A; 2DK9 A; 2NOZ A; 1QNB A; 1KYF A; 2YH5 A; 4DDP A; 1QN6 A; 3ENO C; 2D89 A; 1M3Q A; 3CWT A; 5AN4 A; 2WE6 A; 4EAL A; 3HOP A; 5HSH A; 2JHJ A; 4D7Q A; 4B0A A; 2DKA A; 5A38 A; 4QG5 A; 1WYP A; 3HS9 A; 5JMV D; 5BMN A; 1C4G A; 1VTO A; 4EAI A; 1LWV A; 3I3W A; 5F9C A; 2Y8Q A; 2VJ0 A; 3KMW B; 4D7R A; 2HKP A; 1LWW A; 3ASM A; 2G30 A; 2XHI A; 3DPT A; 1C9B B; 1VOK A; 1K35 A; 1PZD A; 2JV9 A; 5IYD P; 5IYB P; 4Q58 A; 1YTB A; 2NOF A; 4EDM A; 3T4N A; 2V92 A; 3EAY A; 1R4X A; 2HL9 A; 2WA6 A; 1VKL A; 2EYI A; 1QAG A; 1QN4 A; 1JDY A; 5A4B A; 1KYD A; 3CWA A; 1W80 A; 1FN7 A; 1WYL A; 2H5A X; 2D86 A; 3HOR A; 2EE7 A; 1M5Q 1; 1QTP A; 3EIK A; 4TPS A; 3KTU A; 3OC3 C; 3I0W A; 1UT7 A; 1VKA A; 3JAR M; 2QRE A; 5KL0 A; 2DKD A; 3I0X A; 2NOB A; 3RSM A; 2IGP A; 1QNA A; 3N89 A; 2I5W A; 2FKM X; 2VZD A; 2PWW A; 1P5G X; 3F10 A; 4MRQ A; 3OGD A; 2LAE A; 2Z0F A; 3CWU A; 2QR1 A; 1RM1 A; 3RPJ A; 2NOH A; 5IYC P; 2HL8 A; 3ENC A; 4TXK A; 1MB8 A; 2OOY A; 2QRD A; 1WJW A; 1SH5 A; 1N3C A; 3CWS A; 4LVP A; 1NGM A; 3HOC A; 2R5X A; 5J8E A; 2ZFD B; 1H67 A; 3HS8 A; 1KO9 A; 5BVR A; 2D0C A; 4DUL A; 2EQO A; 1AA2 A; 1HU0 A; 2NOL A; 5A36 A; 4EJY A; 3C04 A; 1N39 A; 3IH7 A; 2JPI A; 2OOX A; 1TBA B; 1QN7 A; 2V8Q A; 1PVS A; 4WXA A; 2D0A A; 1YQL A; 1XSZ A; 3KY9 A; 5A37 A; 3TDH A; 3JAK M; 1UL7 A; 1VOL B; 1WYN A; 2WDT A; 1MPG A; 2QLV A; 2R8U A; 1KFQ A; 1J3M A; 1QN5 A; 3TE5 A; 2NLV A; 2L3G A; 2NOE A; 1QN8 A; 2IV8 A; 2QRC A; 1V5K A; 3PDK A; 1KY7 A; 3UW2 A; 3F0Z A; 3FER A; 2VE7 C; 4ROD B; 3OSM A; 5BMP A; 4WZS D; 1UT4 A; 1P2X A; 1TUO A; 4B7L A; 1TBP A; #chains in the Genus database with same CATH homology 2IGP A; 2EQO A; 3EAY A; 4DDP A; 2WE6 A; 4LVR A; 3VP7 A; 4LVP A; 2HL9 A; 5FMT A; 1EUV A; 5FMU A; 2VE7 C; 2HKP A; 2WDT A; 2HL8 A; 2VE7 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
