2HL9 | Genus

Total Genus 71

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	71
sequence length	220
structure length	217
Chain Sequence	SLVPELNEKDDDQVQKALASRENTQLMNRIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKSTPNTVAFNSFFYTNLSERGYQGVRRWMKRKKTQIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPNAMSFAILTDLQKYVMEESKHTIGEDFDLIHLDCPQQPNGYDGIYVCMNTLYGSADAPLDFDYKDAIRMRRFIAHLILTDALK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Hydrolase
source organism	Saccharomyces cerevisiae
publication title	Molecular basis of the redox regulation of SUMO proteases: a protective mechanism of intermolecular disulfide linkage against irreversible sulfhydryl oxidation pubmed doi rcsb
molecule keywords	Ubiquitin-like-specific protease 1
total genus	71
structure length	217
sequence length	220
ec nomenclature	ec 3.4.22.68: Ulp1 peptidase.
pdb deposition date	2006-07-06

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF02902	Peptidase_C48	Ulp1 protease family, C-terminal catalytic domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.418.20	Mainly Alpha	Orthogonal Bundle	Actin-binding Protein, T-fimbrin; domain 1	Actin-binding Protein, T-fimbrin; domain 1	2hl9A01
3.30.310.130	Alpha Beta	2-Layer Sandwich	TATA-Binding Protein	Ubiquitin-related	2hl9A02

2HL9A 1EUVA 3EAYA 2HL8A 2HKPA
chains in the Genus database with same CATH superfamily

1YTFA 2NWVA 1KO9A 2FKFA 4D7RA 1UEGA 1PCZA 2YH5A 1QNEA 1WYNA 2QLVA 1KY7A 1PXYA 1D3UA 3OH6A 2D0CA 1T6AA 2R5XA 1RM1A 1E42A 1H67A 1KFIA 2Z8UA 2WA6A 4MRQA 2OOXA 4HJHA 4EDMA 3IH7A 4LVPA 4EAKA 1P5SA 5JMVD 4Q58A 1UT4A 1P5GX 5BMPA 1EUVA 3OSEA 1BKRA 1TGHA 5A4BA 2DKCA 2YRNA 2D86A 3KTUA 2D0AA 1N39A 2JOIA 3EIKA 2R0OA 4EJZA 2QJZA 2QRDA 1J3MA 5AN4A 4EALA 1V5SA 3FERA 1QNAA 4TXIA 2NOFA 2NOHA 4Q11A 4DDPA 1N3AA 1WYQA 3OH9A 1WYRA 3KY9A 1AISA 3D7QA 4QG5A 2HZSA 3JARM 1V5KA 3N89A 1QN5A 1C4GA 2VZGB 2QREA 3I3WA 2YA3A 5EPCA 4EAGA 3I0WA 1EBMA 1UL7A 5A38A 3I6XA 1WYPA 1W80A 4BJUA 2IGPA 1B9KA 1YQMA 2V92A 2D85A 1QNCA 1KYFA 4Q59A 3HOCA 2NOIA 3JAKM 2VZCA 3VP7A 2WA5A 2WE6A 1VTLE 2QR1A 1KY6A 1UT7A 2E9KA 1PZDA 1SH5A 3CO1A 3KMUB 2NOBA 1JFIC 1MB8A 2JPIA 2NLVA 2D87A 1QAGA 4TXKA 3DPUA 2FUVA 1Q9UA 4WZSD 5BMNA 2MJ7A 2IV9A 1YQKA 1LWWA 2D89A 1MP9A 1CDWA 3PMGA 2DKAA 2FGTA 2EE7A 2MZ8A 5HSHA 1JDYA 1NGMA 3KRMA 4WXAA 3OGDA 2VZDA 1QN8A 1PA7A 2ZFDB 5KL0A 2HZMA 1RT8A 2NOEA 3CWTA 2PWWA 5A37A 5BVRA 1P2XA 1QN6A 3HORA 1R4XA 4DULA 2QRCA 4EAIA 3H1ZA 3T4NA 1C9BB 1QN3A 1KFQA 1M3HA 3I0XA 3CWAA 1YQRA 3C04A 4PY5A 4B7LA 1VTOA 3CWUA 3OCIA 2I5WA 1AA2A 1M5Q1 4D7QA 3CWSA 1SH6A 1MPGA 1M3QA 1DXXA 1PVSA 3RSMA 3CVSA 3F0ZA 1TBPA 2FKMX 1VOKA 3F7PA 1HU0A 2G30A 1K35A 1QTPA 4ROCB 2D88A 1QTSA 1YTBA 4EDLA 1NH2A 3PDKA 5FMUA 4IL8A 1WKUA 4EJYA 4I8OA 3TDHA 5IYCP 3OSTA 2EYIA 1NVPA 4ROEB 2JV9A 4TPSA 2L3GA 2O3OA 1TBAB 2H4LX 3D4VA 2V9JA 4C7PA 1WYLA 1LXTA 3HS9A 1PCJX 1PCMX 1K2YX 3REPB 2VJ0A 1DIZA 2R8UA 2IV8A 1LWVA 1WJOA 2WFNA 3NA5A 2DK9A 4Q57B 3ENCA 4B0AA 2V8QA 3ULXA 2JHJA 2K2RA 2K3SA 1QNBA 3HS8A 1YQLA 2QJXA 1WYMA 2EHBD 5IYDP 3RPJA 3JALM 2NOLA 1UJOA 1N3CA 3UW2A 1TJTA 1BHDA 2EYNA 2NOZA 3KMWB 2F7LA 2HL8A 2Y8QA 3VN5A 3OC3C 2XHIA 2WA7A 3BKQX 2Z0FA 4EAJA 1KYDA 4LVRA 1WQAA 4EDNA 3DPTA 2HL9A 3OSMA 1KYUA 2JHNA 1LWYA 4WX8A 5A36A 2OOYA 2WDTA 1QN4A 5FMTA 1VOLB 3OLPA 3EAYA 1VKAA 1WJWA 3HOPA 3F10A 1WYOA 1TUOA 1XSZA 1QN7A 5L0OA 2VE7C 3SNSA 1P5DX 3TE5A 1WIXA 1QN9A 1C47A 2HKPA 4CFFA 2H5AX 2VZIB 2D0BA 2Y8LA 2NVMA 2RR8A 3ASMA 2DKDA 4RODB 5F9CA 1AOAA 5JN5A 3CVTA 1VKLA 5IYBP 2LAEA 2VE7A 3ENOC 2EQOA 1FN7A 3CW7A 5J8EA
chains in the Genus database with same CATH topology

2VE7A 2IGPA 2HL9A 4LVRA 5FMUA 2EQOA 1EUVA 4LVPA 3EAYA 3VP7A 2VE7C 2WDTA 4DDPA 2HL8A 2HKPA 2WE6A 5FMTA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2HL9 A;  1EUV A;  3EAY A;  2HL8 A;  2HKP A; 
#chains in the Genus database with same CATH topology
 1YTF A;  2NWV A;  1KO9 A;  2FKF A;  4D7R A;  1UEG A;  1PCZ A;  2YH5 A;  1QNE A;  1WYN A;  2QLV A;  1KY7 A;  1PXY A;  1D3U A;  3OH6 A;  2D0C A;  1T6A A;  2R5X A;  1RM1 A;  1E42 A;  1H67 A;  1KFI A;  2Z8U A;  2WA6 A;  4MRQ A;  2OOX A;  4HJH A;  4EDM A;  3IH7 A;  4LVP A;  4EAK A;  1P5S A;  5JMV D;  4Q58 A;  1UT4 A;  1P5G X;  5BMP A;  1EUV A;  3OSE A;  1BKR A;  1TGH A;  5A4B A;  2DKC A;  2YRN A;  2D86 A;  3KTU A;  2D0A A;  1N39 A;  2JOI A;  3EIK A;  2R0O A;  4EJZ A;  2QJZ A;  2QRD A;  1J3M A;  5AN4 A;  4EAL A;  1V5S A;  3FER A;  1QNA A;  4TXI A;  2NOF A;  2NOH A;  4Q11 A;  4DDP A;  1N3A A;  1WYQ A;  3OH9 A;  1WYR A;  3KY9 A;  1AIS A;  3D7Q A;  4QG5 A;  2HZS A;  3JAR M;  1V5K A;  3N89 A;  1QN5 A;  1C4G A;  2VZG B;  2QRE A;  3I3W A;  2YA3 A;  5EPC A;  4EAG A;  3I0W A;  1EBM A;  1UL7 A;  5A38 A;  3I6X A;  1WYP A;  1W80 A;  4BJU A;  2IGP A;  1B9K A;  1YQM A;  2V92 A;  2D85 A;  1QNC A;  1KYF A;  4Q59 A;  3HOC A;  2NOI A;  3JAK M;  2VZC A;  3VP7 A;  2WA5 A;  2WE6 A;  1VTL E;  2QR1 A;  1KY6 A;  1UT7 A;  2E9K A;  1PZD A;  1SH5 A;  3CO1 A;  3KMU B;  2NOB A;  1JFI C;  1MB8 A;  2JPI A;  2NLV A;  2D87 A;  1QAG A;  4TXK A;  3DPU A;  2FUV A;  1Q9U A;  4WZS D;  5BMN A;  2MJ7 A;  2IV9 A;  1YQK A;  1LWW A;  2D89 A;  1MP9 A;  1CDW A;  3PMG A;  2DKA A;  2FGT A;  2EE7 A;  2MZ8 A;  5HSH A;  1JDY A;  1NGM A;  3KRM A;  4WXA A;  3OGD A;  2VZD A;  1QN8 A;  1PA7 A;  2ZFD B;  5KL0 A;  2HZM A;  1RT8 A;  2NOE A;  3CWT A;  2PWW A;  5A37 A;  5BVR A;  1P2X A;  1QN6 A;  3HOR A;  1R4X A;  4DUL A;  2QRC A;  4EAI A;  3H1Z A;  3T4N A;  1C9B B;  1QN3 A;  1KFQ A;  1M3H A;  3I0X A;  3CWA A;  1YQR A;  3C04 A;  4PY5 A;  4B7L A;  1VTO A;  3CWU A;  3OCI A;  2I5W A;  1AA2 A;  1M5Q 1;  4D7Q A;  3CWS A;  1SH6 A;  1MPG A;  1M3Q A;  1DXX A;  1PVS A;  3RSM A;  3CVS A;  3F0Z A;  1TBP A;  2FKM X;  1VOK A;  3F7P A;  1HU0 A;  2G30 A;  1K35 A;  1QTP A;  4ROC B;  2D88 A;  1QTS A;  1YTB A;  4EDL A;  1NH2 A;  3PDK A;  5FMU A;  4IL8 A;  1WKU A;  4EJY A;  4I8O A;  3TDH A;  5IYC P;  3OST A;  2EYI A;  1NVP A;  4ROE B;  2JV9 A;  4TPS A;  2L3G A;  2O3O A;  1TBA B;  2H4L X;  3D4V A;  2V9J A;  4C7P A;  1WYL A;  1LXT A;  3HS9 A;  1PCJ X;  1PCM X;  1K2Y X;  3REP B;  2VJ0 A;  1DIZ A;  2R8U A;  2IV8 A;  1LWV A;  1WJO A;  2WFN A;  3NA5 A;  2DK9 A;  4Q57 B;  3ENC A;  4B0A A;  2V8Q A;  3ULX A;  2JHJ A;  2K2R A;  2K3S A;  1QNB A;  3HS8 A;  1YQL A;  2QJX A;  1WYM A;  2EHB D;  5IYD P;  3RPJ A;  3JAL M;  2NOL A;  1UJO A;  1N3C A;  3UW2 A;  1TJT A;  1BHD A;  2EYN A;  2NOZ A;  3KMW B;  2F7L A;  2HL8 A;  2Y8Q A;  3VN5 A;  3OC3 C;  2XHI A;  2WA7 A;  3BKQ X;  2Z0F A;  4EAJ A;  1KYD A;  4LVR A;  1WQA A;  4EDN A;  3DPT A;  2HL9 A;  3OSM A;  1KYU A;  2JHN A;  1LWY A;  4WX8 A;  5A36 A;  2OOY A;  2WDT A;  1QN4 A;  5FMT A;  1VOL B;  3OLP A;  3EAY A;  1VKA A;  1WJW A;  3HOP A;  3F10 A;  1WYO A;  1TUO A;  1XSZ A;  1QN7 A;  5L0O A;  2VE7 C;  3SNS A;  1P5D X;  3TE5 A;  1WIX A;  1QN9 A;  1C47 A;  2HKP A;  4CFF A;  2H5A X;  2VZI B;  2D0B A;  2Y8L A;  2NVM A;  2RR8 A;  3ASM A;  2DKD A;  4ROD B;  5F9C A;  1AOA A;  5JN5 A;  3CVT A;  1VKL A;  5IYB P;  2LAE A;  2VE7 A;  3ENO C;  2EQO A;  1FN7 A;  3CW7 A;  5J8E A; 
#chains in the Genus database with same CATH homology
 2VE7 A;  2IGP A;  2HL9 A;  4LVR A;  5FMU A;  2EQO A;  1EUV A;  4LVP A;  3EAY A;  3VP7 A;  2VE7 C;  2WDT A;  4DDP A;  2HL8 A;  2HKP A;  2WE6 A;  5FMT A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2HL9A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations