1FLO | Genus

Total Genus 121

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	121
sequence length	422
structure length	405
Chain Sequence	PQFDILCKTPPKVLVRQFVERFERPSGEKIALCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYYSDITDIVSSLQLQFESKGNSHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRVNRTGNSSSNKQEYQLLKDNLVRSYNKALKKNAPYSIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNWSDKTTYTHQITAIPDHYFALVSRYYAYDPISKEMIALKDETNPIEEWQHIEQLKGSAEGSIRYPAWNGIISQEVLDYLSSYINRRI

Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

loadScript /static/js/j2s/core/package.js

loadScript /static/js/j2s/core/corejmol.z.js

loadScript /static/js/j2s/core/corescript.z.js

JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__0973638714596032__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__0973638714596032__)

vwrOptions:

{ "name":"jmolApplet0","applet":true,"documentBase":"https://genus.fuw.edu.pl/view/1FLO/A/","platform":"J.awtjs2d.Platform","fullName":"jmolApplet0__0973638714596032__","codePath":"https:/static/js/j2s/","display":"jmolApplet0_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"0973638714596032","bgcolor":"white" }

setting document base to "https://genus.fuw.edu.pl/view/1FLO/A/"

Jmol Version: 14.29.13 2018-04-17 17:17

java.vendor: Java2Script (HTML5)

java.version: 2018-01-28 23:38:52 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor white

backgroundColor = "white"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue AUDIOCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jmolApplet0__0973638714596032__ ready

script 1 started

platformSpeed = 8

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Ligase, lyase/dna
source organism	Saccharomyces cerevisiae
publication title	Crystal structure of a Flp recombinase-Holliday junction complex: assembly of an active oligomer by helix swapping. pubmed doi rcsb
molecule keywords	SYMMETRIZED FRT DNA SITES
total genus	121
structure length	405
sequence length	422
chains with identical sequence	B, C, D
ec nomenclature
pdb deposition date	2000-08-14

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF03930	Flp_N	Recombinase Flp protein N-terminus
A	PF05202	Flp_C	Recombinase Flp protein

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.443.10	Mainly Alpha	Orthogonal Bundle	hpI Integrase; Chain A	Intergrase catalytic core	1floA02
3.30.300.80	Alpha Beta	2-Layer Sandwich	GMP Synthetase; Chain A, domain 3	FLP Recombinase, lambda integrase-like, N-terminal domain (domain 1)	1floA01

1AE9A 1Q3VA 1P4EC 2HOFA 1M6XC 2CRXA 3C28A 1KBUA 1CRXA 1F44A 3UXUA 1P7DA 1OUQA 1P4EA 3VCFA 1DRGA 1Q3UA 1M6XA 5DORA 1PVQA 1PVRA 2HOIA 2A3VA 1XNSA 1PVPA 4CRXA 5C6KA 1AIHA 5DCFA 4DKSA 1XO0A 3C29A 1A0PA 3NKHA 1MA7A 1NZBA 1FLOA 4A8EA 3CRXA 3MGVA 1Z19A 1Z1BA 5CRXA
chains in the Genus database with same CATH superfamily

1MD9A 4RM3A 2UU9C 1RG9A 1V26A 2HHHC 4RM2A 1WH9A 4LFAC 3GR1A 1YJ7A 4DR1C 3SO4A 2QW0X 5ADZA 3IEUA 1A0PA 3NKHA 1PG3A 4PUGA 4E0YA 3CQ1A 4B3RC 5BSTA 4JI5C 1Q3VA 1P4EC 2HOFA 3H2TA 1M6XC 4FUQA 4JI7C 4L4QA 5AE2A 4IZ6A 4PUIA 4IR7A 2NCLA 1UWDA 2Z51A 1AMUA 4F43A 1XHJA 4KTVA 1HNZC 3A4IA 4LFBC 1PU1A 3VNRA 5K8FA 3O2EA 3R44A 5A19A 1PA4A 3RG2A 3GR0A 2Y27A 2P2JA 1IBKC 4B3SC 1MXCA 4X66C 4DR6C 3L95X 4DR5C 4X62C 1ULTA 4DR2C 2D1RA 3DLPX 2QL8A 1HNXC 2QVZX 4LF9C 4E0GA 5C6KA 5GTDA 1ZB8A 1USPB 2CXCA 3LNVA 4E10A 4RMNA 2VQFC 3UXUA 4BC9A 1Z1BA 4X64C 1O90A 3R9WA 2MCQA 4BSZA 1N32C 1MXAA 1V60A 3T1YC 1OUQA 1P4EA 3K6RA 1M6XA 4LF7C 2WD9A 2AYAA 2F4VC 1LQLA 4LF5C 3OTOC 4JI2C 4DUZC 4RLFA 1IBLC 5T8SA 2P20A 1NYEA 4BC7A 4LF6C 3LNOA 4RLQA 3ETCA 4YY3C 2D1SA 4GXQA 1FUGA 4U5YD 1ZB9A 4JYAC 2P2MA 1IBMC 4PZPA 3A26A 2D28C 4DCVA 4PHTA 4LFCC 2HOIA 2ZZNA 1PVPA 3PBKA 2E8CA 4LF4C 5BR8C 3ETOA 5LMNC 2YX1A 1RY2A 3A9UA 3I08A 4GS5A 5BUQA 2UXDC 2WP0C 4E0ZA 4NXMC 4I9GA 4JI3C 1O93A 3LUSA 2D7VA 4DG9A 5KYTA 4WV3A 4DG8A 4DV1C 5BSVA 5KEIA 5DORA 1PVQA 2JMPA 3CQ3A 4DR7C 2QVYX 1N2FA 1LCIA 3VNQA 5BUSA 2UXCC 1MDBA 1XMOC 2E8EA 2UUBC 3T79A 1AE9A 4DR3C 2V6EA 4DV3C 4E0PA 3NI2A 3AF6A 2CY1A 4R0MA 1KBUA 5A2QD 5IFIA 1DRGA 5IWAC 4LF8C 5FLXD 3J80D 4LE5A 2BH1X 4BCAA 1AIHA 3UOWA 5DCFA 1V25A 4NDNA 3TDEA 4NXNC 5BURA 1XRBA 5LMUC 1MDFA 2MMAB 3PESA 3PROC 4I9FA 4JI6C 3UX2A 3I07A 4AQYC 2ASBA 1P7DA 4JM1A 3CW9A 2KZ0A 1XMQC 2D1TA 5BSWA 2A3VA 4GKJC 4CRXA 5AE3A 4KTTA 4R1MA 1XO0A 3A25A 1HNWC 1XRAA 1ML8A 3UZ0A 5H9UA 1HH2P 3GKUA 3IMLA 5BSUA 3E7XA 2UUAC 2ZZMA 5A1IA 4GKKC 4DCTA 4B3MC 3AF5A 3N2QA 2P2QA 3T1HC 1N36C 3TQIA 1IB8A 3UEBA 2VQEC 4MH4A 3DAYA 2OPLA 2E8FA 4YHHC 2P02A 3B7WA 4MTNA 1Z19A 1PG4A 3G7SA 2PT7G 5KYVA 2YWCA 3NPDA 1TH5A 3NYQA 2KZFA 4G37A 3AY0A 4GXRA 1K0RA 1XS3A 3S82A 5E7QA 1MXBA 2JNVA 2YCBA 2DPLA 4DCSA 3LAXA 1VEHA 5BSMA 1I94C 4XX2A 3MGVA 2D1QA 5CZXA 4PUHA 3UX3A 4RVOA 3JAMD 5K85A 3KXWA 5LCIA 5A1GA 4JI4C 3C28A 4DV7C 4DV0C 1T5DX 3VCFA 2DYJA 2M5OA 3R9XA 2V7BA 2DHMA 1QWIA 4D4IA 3EQ6A 1FJGC 4D4GA 2E7GA 4JI0C 5CZVA 2D27A 4L7IA 4R1LA 4PROC 1N33C 4DV4C 4D56A 4DCUA 1O92A 1CRXA 3CQ2A 1F44A 5DV9A 2YWBA 2OBVA 1WF3A 3A9VA 1MKYA 2P2FA 4JI8C 1EGAA 4L2ZA 2CU6A 1XRCA 2EGTA 4ZJZA 2UXBC 3DHVA 2P2BA 1NZBA 2XR1A 4D57A 4G36A 4F41A 3SQIA 4HPVA 4OXIA 3LGXA 1O9TA 2KDNA 3TUFA 3EERA 4EATA 1XNQC 2PN2A 3E7WA 1GPMA 3CW8X 2OO4A 2BJOA 4FUTA 2ZM6C 2QVXX 2M5HA 4ISBA 1VLAA 4X65C 1MA7A 2UUCC 2ATWA 1T5HX 1J5EC 5T8TA 2MM9A 3RV2A 2E0GA 3IEVA 5IT9D 4B3TC 1HR0C 2Y4OA 3J81D 1USPA 4DUYC 4OX9C 4OYCA 3C29A 1FLOA 2OPLB 4E0JA 1XNRC 4JI1C 3FCCA 4KHPC 3CRXA 1N34C 1L2FA 4DV5C 3VNSA 4DR4C 4G1IA 1BA3A 1UKKA 1NY8A 4RVNA 4TPSB 2CRXA 2E5LC 5JRHA 2ONFA 1Q3UA 2PROA 1PVRA 2Y4NA 3CJEA 1XNSA 4NOZA 2VZEA 3FCEA 4DKSA 3NYRA 3C5EA 5CRXA 4K0BA 4ODJA 4WS9A 1JOSA 1QM4A 4JV5C 5BSRA 4ACOA 1KKGA 4K0KC 4DV2C 3IPLA 4BBYA 4ZLPA 4FTFA 3TR3A 3L8CA 1WCJA 3GPCA 5AE1A 4DV6C 3N54B 2VSQA 4A8EA 2HJGA 1P7LA 4DWPA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1AE9 A;  1Q3V A;  1P4E C;  2HOF A;  1M6X C;  2CRX A;  3C28 A;  1KBU A;  1CRX A;  1F44 A;  3UXU A;  1P7D A;  1OUQ A;  1P4E A;  3VCF A;  1DRG A;  1Q3U A;  1M6X A;  5DOR A;  1PVQ A;  1PVR A;  2HOI A;  2A3V A;  1XNS A;  1PVP A;  4CRX A;  5C6K A;  1AIH A;  5DCF A;  4DKS A;  1XO0 A;  3C29 A;  1A0P A;  3NKH A;  1MA7 A;  1NZB A;  1FLO A;  4A8E A;  3CRX A;  3MGV A;  1Z19 A;  1Z1B A;  5CRX A; 
#chains in the Genus database with same CATH topology
 1MD9 A;  4RM3 A;  2UU9 C;  1RG9 A;  1V26 A;  2HHH C;  4RM2 A;  1WH9 A;  4LFA C;  3GR1 A;  1YJ7 A;  4DR1 C;  3SO4 A;  2QW0 X;  5ADZ A;  3IEU A;  1A0P A;  3NKH A;  1PG3 A;  4PUG A;  4E0Y A;  3CQ1 A;  4B3R C;  5BST A;  4JI5 C;  1Q3V A;  1P4E C;  2HOF A;  3H2T A;  1M6X C;  4FUQ A;  4JI7 C;  4L4Q A;  5AE2 A;  4IZ6 A;  4PUI A;  4IR7 A;  2NCL A;  1UWD A;  2Z51 A;  1AMU A;  4F43 A;  1XHJ A;  4KTV A;  1HNZ C;  3A4I A;  4LFB C;  1PU1 A;  3VNR A;  5K8F A;  3O2E A;  3R44 A;  5A19 A;  1PA4 A;  3RG2 A;  3GR0 A;  2Y27 A;  2P2J A;  1IBK C;  4B3S C;  1MXC A;  4X66 C;  4DR6 C;  3L95 X;  4DR5 C;  4X62 C;  1ULT A;  4DR2 C;  2D1R A;  3DLP X;  2QL8 A;  1HNX C;  2QVZ X;  4LF9 C;  4E0G A;  5C6K A;  5GTD A;  1ZB8 A;  1USP B;  2CXC A;  3LNV A;  4E10 A;  4RMN A;  2VQF C;  3UXU A;  4BC9 A;  1Z1B A;  4X64 C;  1O90 A;  3R9W A;  2MCQ A;  4BSZ A;  1N32 C;  1MXA A;  1V60 A;  3T1Y C;  1OUQ A;  1P4E A;  3K6R A;  1M6X A;  4LF7 C;  2WD9 A;  2AYA A;  2F4V C;  1LQL A;  4LF5 C;  3OTO C;  4JI2 C;  4DUZ C;  4RLF A;  1IBL C;  5T8S A;  2P20 A;  1NYE A;  4BC7 A;  4LF6 C;  3LNO A;  4RLQ A;  3ETC A;  4YY3 C;  2D1S A;  4GXQ A;  1FUG A;  4U5Y D;  1ZB9 A;  4JYA C;  2P2M A;  1IBM C;  4PZP A;  3A26 A;  2D28 C;  4DCV A;  4PHT A;  4LFC C;  2HOI A;  2ZZN A;  1PVP A;  3PBK A;  2E8C A;  4LF4 C;  5BR8 C;  3ETO A;  5LMN C;  2YX1 A;  1RY2 A;  3A9U A;  3I08 A;  4GS5 A;  5BUQ A;  2UXD C;  2WP0 C;  4E0Z A;  4NXM C;  4I9G A;  4JI3 C;  1O93 A;  3LUS A;  2D7V A;  4DG9 A;  5KYT A;  4WV3 A;  4DG8 A;  4DV1 C;  5BSV A;  5KEI A;  5DOR A;  1PVQ A;  2JMP A;  3CQ3 A;  4DR7 C;  2QVY X;  1N2F A;  1LCI A;  3VNQ A;  5BUS A;  2UXC C;  1MDB A;  1XMO C;  2E8E A;  2UUB C;  3T79 A;  1AE9 A;  4DR3 C;  2V6E A;  4DV3 C;  4E0P A;  3NI2 A;  3AF6 A;  2CY1 A;  4R0M A;  1KBU A;  5A2Q D;  5IFI A;  1DRG A;  5IWA C;  4LF8 C;  5FLX D;  3J80 D;  4LE5 A;  2BH1 X;  4BCA A;  1AIH A;  3UOW A;  5DCF A;  1V25 A;  4NDN A;  3TDE A;  4NXN C;  5BUR A;  1XRB A;  5LMU C;  1MDF A;  2MMA B;  3PES A;  3PRO C;  4I9F A;  4JI6 C;  3UX2 A;  3I07 A;  4AQY C;  2ASB A;  1P7D A;  4JM1 A;  3CW9 A;  2KZ0 A;  1XMQ C;  2D1T A;  5BSW A;  2A3V A;  4GKJ C;  4CRX A;  5AE3 A;  4KTT A;  4R1M A;  1XO0 A;  3A25 A;  1HNW C;  1XRA A;  1ML8 A;  3UZ0 A;  5H9U A;  1HH2 P;  3GKU A;  3IML A;  5BSU A;  3E7X A;  2UUA C;  2ZZM A;  5A1I A;  4GKK C;  4DCT A;  4B3M C;  3AF5 A;  3N2Q A;  2P2Q A;  3T1H C;  1N36 C;  3TQI A;  1IB8 A;  3UEB A;  2VQE C;  4MH4 A;  3DAY A;  2OPL A;  2E8F A;  4YHH C;  2P02 A;  3B7W A;  4MTN A;  1Z19 A;  1PG4 A;  3G7S A;  2PT7 G;  5KYV A;  2YWC A;  3NPD A;  1TH5 A;  3NYQ A;  2KZF A;  4G37 A;  3AY0 A;  4GXR A;  1K0R A;  1XS3 A;  3S82 A;  5E7Q A;  1MXB A;  2JNV A;  2YCB A;  2DPL A;  4DCS A;  3LAX A;  1VEH A;  5BSM A;  1I94 C;  4XX2 A;  3MGV A;  2D1Q A;  5CZX A;  4PUH A;  3UX3 A;  4RVO A;  3JAM D;  5K85 A;  3KXW A;  5LCI A;  5A1G A;  4JI4 C;  3C28 A;  4DV7 C;  4DV0 C;  1T5D X;  3VCF A;  2DYJ A;  2M5O A;  3R9X A;  2V7B A;  2DHM A;  1QWI A;  4D4I A;  3EQ6 A;  1FJG C;  4D4G A;  2E7G A;  4JI0 C;  5CZV A;  2D27 A;  4L7I A;  4R1L A;  4PRO C;  1N33 C;  4DV4 C;  4D56 A;  4DCU A;  1O92 A;  1CRX A;  3CQ2 A;  1F44 A;  5DV9 A;  2YWB A;  2OBV A;  1WF3 A;  3A9V A;  1MKY A;  2P2F A;  4JI8 C;  1EGA A;  4L2Z A;  2CU6 A;  1XRC A;  2EGT A;  4ZJZ A;  2UXB C;  3DHV A;  2P2B A;  1NZB A;  2XR1 A;  4D57 A;  4G36 A;  4F41 A;  3SQI A;  4HPV A;  4OXI A;  3LGX A;  1O9T A;  2KDN A;  3TUF A;  3EER A;  4EAT A;  1XNQ C;  2PN2 A;  3E7W A;  1GPM A;  3CW8 X;  2OO4 A;  2BJO A;  4FUT A;  2ZM6 C;  2QVX X;  2M5H A;  4ISB A;  1VLA A;  4X65 C;  1MA7 A;  2UUC C;  2ATW A;  1T5H X;  1J5E C;  5T8T A;  2MM9 A;  3RV2 A;  2E0G A;  3IEV A;  5IT9 D;  4B3T C;  1HR0 C;  2Y4O A;  3J81 D;  1USP A;  4DUY C;  4OX9 C;  4OYC A;  3C29 A;  1FLO A;  2OPL B;  4E0J A;  1XNR C;  4JI1 C;  3FCC A;  4KHP C;  3CRX A;  1N34 C;  1L2F A;  4DV5 C;  3VNS A;  4DR4 C;  4G1I A;  1BA3 A;  1UKK A;  1NY8 A;  4RVN A;  4TPS B;  2CRX A;  2E5L C;  5JRH A;  2ONF A;  1Q3U A;  2PRO A;  1PVR A;  2Y4N A;  3CJE A;  1XNS A;  4NOZ A;  2VZE A;  3FCE A;  4DKS A;  3NYR A;  3C5E A;  5CRX A;  4K0B A;  4ODJ A;  4WS9 A;  1JOS A;  1QM4 A;  4JV5 C;  5BSR A;  4ACO A;  1KKG A;  4K0K C;  4DV2 C;  3IPL A;  4BBY A;  4ZLP A;  4FTF A;  3TR3 A;  3L8C A;  1WCJ A;  3GPC A;  5AE1 A;  4DV6 C;  3N54 B;  2VSQ A;  4A8E A;  2HJG A;  1P7L A;  4DWP A; 
#chains in the Genus database with same CATH homology
 1AE9 A;  1Q3V A;  1P4E C;  2HOF A;  1M6X C;  2CRX A;  3C28 A;  1KBU A;  1CRX A;  1F44 A;  3UXU A;  1P7D A;  1OUQ A;  1P4E A;  3VCF A;  1DRG A;  1Q3U A;  1M6X A;  5DOR A;  1PVQ A;  1PVR A;  2HOI A;  2A3V A;  1XNS A;  1PVP A;  4CRX A;  5C6K A;  1AIH A;  5DCF A;  4DKS A;  1XO0 A;  3C29 A;  1A0P A;  3NKH A;  1MA7 A;  1NZB A;  1FLO A;  4A8E A;  3CRX A;  3MGV A;  1Z19 A;  1Z1B A;  5CRX A;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

1FLOA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations